data_1JN2 # _model_server_result.job_id uflTNzm9qQrTenyuK83piw _model_server_result.datetime_utc '2024-10-13 02:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":238}' # _entry.id 1JN2 # _exptl.entry_id 1JN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JN2 _cell.length_a 106 _cell.length_b 117.3 _cell.length_c 126 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 P GLU 8 1_555 C MN MN . P MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OD1 ASP 10 P ASP 10 1_555 B CA CA . P CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 A OD2 ASP 10 P ASP 10 1_555 B CA CA . P CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A OD2 ASP 10 P ASP 10 1_555 C MN MN . P MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A O TYR 12 P TYR 12 1_555 B CA CA . P CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 A OD1 ASN 14 P ASN 14 1_555 B CA CA . P CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc7 A OD2 ASP 19 P ASP 19 1_555 B CA CA . P CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc8 A OD1 ASP 19 P ASP 19 1_555 C MN MN . P MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JN2 _atom_sites.fract_transf_matrix[1][1] 0.009434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA P 1 238 238 CA CA . C 3 MN P 1 239 239 MN MN . D 4 SFP P 1 1001 1 SFP SFP . E 5 HOH P 1 1002 1 HOH TIP . E 5 HOH P 2 1003 2 HOH TIP . E 5 HOH P 3 1004 3 HOH TIP . E 5 HOH P 4 1005 4 HOH TIP . E 5 HOH P 5 1006 5 HOH TIP . E 5 HOH P 6 1007 6 HOH TIP . E 5 HOH P 7 1008 7 HOH TIP . E 5 HOH P 8 1009 8 HOH TIP . E 5 HOH P 9 1010 9 HOH TIP . E 5 HOH P 10 1011 10 HOH TIP . E 5 HOH P 11 1012 11 HOH TIP . E 5 HOH P 12 1013 12 HOH TIP . E 5 HOH P 13 1014 13 HOH TIP . E 5 HOH P 14 1015 14 HOH TIP . E 5 HOH P 15 1016 15 HOH TIP . E 5 HOH P 16 1017 16 HOH TIP . E 5 HOH P 17 1018 17 HOH TIP . E 5 HOH P 18 1019 18 HOH TIP . E 5 HOH P 19 1020 19 HOH TIP . E 5 HOH P 20 1021 20 HOH TIP . E 5 HOH P 21 1022 21 HOH TIP . E 5 HOH P 22 1023 22 HOH TIP . E 5 HOH P 23 1024 23 HOH TIP . E 5 HOH P 24 1025 24 HOH TIP . E 5 HOH P 25 1026 25 HOH TIP . E 5 HOH P 26 1027 26 HOH TIP . E 5 HOH P 27 1028 27 HOH TIP . E 5 HOH P 28 1029 28 HOH TIP . E 5 HOH P 29 1030 29 HOH TIP . E 5 HOH P 30 1031 30 HOH TIP . E 5 HOH P 31 1032 31 HOH TIP . E 5 HOH P 32 1033 32 HOH TIP . E 5 HOH P 33 1034 33 HOH TIP . E 5 HOH P 34 1035 34 HOH TIP . E 5 HOH P 35 1036 35 HOH TIP . E 5 HOH P 36 1037 36 HOH TIP . E 5 HOH P 37 1038 37 HOH TIP . E 5 HOH P 38 1039 38 HOH TIP . E 5 HOH P 39 1040 39 HOH TIP . E 5 HOH P 40 1041 40 HOH TIP . E 5 HOH P 41 1042 41 HOH TIP . E 5 HOH P 42 1043 42 HOH TIP . E 5 HOH P 43 1044 43 HOH TIP . E 5 HOH P 44 1045 44 HOH TIP . E 5 HOH P 45 1046 45 HOH TIP . E 5 HOH P 46 1047 46 HOH TIP . E 5 HOH P 47 1048 47 HOH TIP . E 5 HOH P 48 1049 48 HOH TIP . E 5 HOH P 49 1050 49 HOH TIP . E 5 HOH P 50 1051 50 HOH TIP . E 5 HOH P 51 1052 51 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.2 _atom_site.Cartn_y 18.523 _atom_site.Cartn_z 24.766 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 238 _atom_site.auth_asym_id P _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #