data_1JNI # _model_server_result.job_id Mw4D2Ltvu6jSXLy8DqXHCw _model_server_result.datetime_utc '2025-03-04 08:12:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":126}' # _entry.id 1JNI # _exptl.entry_id 1JNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JNI _cell.length_a 78.752 _cell.length_b 78.752 _cell.length_c 29.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JNI _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 57 A CYS 58 1_555 C CAB HEC . A HEC 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? covale ? covale2 A SG CYS 60 A CYS 61 1_555 C CAC HEC . A HEC 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale3 A SG CYS 97 A CYS 98 1_555 B CAB HEC . A HEC 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? covale ? covale4 A SG CYS 100 A CYS 101 1_555 B CAC HEC . A HEC 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc1 A NE2 HIS 43 A HIS 44 1_555 C FE HEC . A HEC 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A NE2 HIS 61 A HIS 62 1_555 C FE HEC . A HEC 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A NE2 HIS 78 A HIS 79 1_555 B FE HEC . A HEC 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 A NE2 HIS 101 A HIS 102 1_555 B FE HEC . A HEC 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1JNI _atom_sites.fract_transf_matrix[1][1] 0.012698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.034427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 125 110 HEC HEM . C 2 HEC A 1 126 111 HEC HEM . D 3 HOH A 1 127 1 HOH HOH . D 3 HOH A 2 128 2 HOH HOH . D 3 HOH A 3 129 3 HOH HOH . D 3 HOH A 4 130 4 HOH HOH . D 3 HOH A 5 131 5 HOH HOH . D 3 HOH A 6 132 6 HOH HOH . D 3 HOH A 7 133 7 HOH HOH . D 3 HOH A 8 134 8 HOH HOH . D 3 HOH A 9 135 9 HOH HOH . D 3 HOH A 10 136 10 HOH HOH . D 3 HOH A 11 137 11 HOH HOH . D 3 HOH A 12 138 12 HOH HOH . D 3 HOH A 13 139 13 HOH HOH . D 3 HOH A 14 140 14 HOH HOH . D 3 HOH A 15 141 15 HOH HOH . D 3 HOH A 16 142 16 HOH HOH . D 3 HOH A 17 143 17 HOH HOH . D 3 HOH A 18 144 18 HOH HOH . D 3 HOH A 19 145 19 HOH HOH . D 3 HOH A 20 146 20 HOH HOH . D 3 HOH A 21 147 21 HOH HOH . D 3 HOH A 22 148 22 HOH HOH . D 3 HOH A 23 149 23 HOH HOH . D 3 HOH A 24 150 24 HOH HOH . D 3 HOH A 25 151 25 HOH HOH . D 3 HOH A 26 152 26 HOH HOH . D 3 HOH A 27 153 27 HOH HOH . D 3 HOH A 28 154 28 HOH HOH . D 3 HOH A 29 155 29 HOH HOH . D 3 HOH A 30 156 30 HOH HOH . D 3 HOH A 31 157 31 HOH HOH . D 3 HOH A 32 158 32 HOH HOH . D 3 HOH A 33 159 33 HOH HOH . D 3 HOH A 34 160 34 HOH HOH . D 3 HOH A 35 161 35 HOH HOH . D 3 HOH A 36 162 36 HOH HOH . D 3 HOH A 37 163 37 HOH HOH . D 3 HOH A 38 164 38 HOH HOH . D 3 HOH A 39 165 39 HOH HOH . D 3 HOH A 40 166 40 HOH HOH . D 3 HOH A 41 167 41 HOH HOH . D 3 HOH A 42 168 42 HOH HOH . D 3 HOH A 43 169 43 HOH HOH . D 3 HOH A 44 170 44 HOH HOH . D 3 HOH A 45 171 45 HOH HOH . D 3 HOH A 46 172 46 HOH HOH . D 3 HOH A 47 173 47 HOH HOH . D 3 HOH A 48 174 48 HOH HOH . D 3 HOH A 49 175 49 HOH HOH . D 3 HOH A 50 176 50 HOH HOH . D 3 HOH A 51 177 51 HOH HOH . D 3 HOH A 52 178 52 HOH HOH . D 3 HOH A 53 179 53 HOH HOH . D 3 HOH A 54 180 54 HOH HOH . D 3 HOH A 55 181 55 HOH HOH . D 3 HOH A 56 182 56 HOH HOH . D 3 HOH A 57 183 57 HOH HOH . D 3 HOH A 58 184 58 HOH HOH . D 3 HOH A 59 185 59 HOH HOH . D 3 HOH A 60 186 60 HOH HOH . D 3 HOH A 61 187 61 HOH HOH . D 3 HOH A 62 188 62 HOH HOH . D 3 HOH A 63 189 63 HOH HOH . D 3 HOH A 64 190 64 HOH HOH . D 3 HOH A 65 191 65 HOH HOH . D 3 HOH A 66 192 66 HOH HOH . D 3 HOH A 67 193 67 HOH HOH . D 3 HOH A 68 194 68 HOH HOH . D 3 HOH A 69 195 69 HOH HOH . D 3 HOH A 70 196 70 HOH HOH . D 3 HOH A 71 197 71 HOH HOH . D 3 HOH A 72 198 72 HOH HOH . D 3 HOH A 73 199 73 HOH HOH . D 3 HOH A 74 200 74 HOH HOH . D 3 HOH A 75 201 75 HOH HOH . D 3 HOH A 76 202 76 HOH HOH . D 3 HOH A 77 203 77 HOH HOH . D 3 HOH A 78 204 78 HOH HOH . D 3 HOH A 79 205 79 HOH HOH . D 3 HOH A 80 206 80 HOH HOH . D 3 HOH A 81 207 81 HOH HOH . D 3 HOH A 82 208 82 HOH HOH . D 3 HOH A 83 209 83 HOH HOH . D 3 HOH A 84 210 84 HOH HOH . D 3 HOH A 85 211 85 HOH HOH . D 3 HOH A 86 212 87 HOH HOH . D 3 HOH A 87 213 88 HOH HOH . D 3 HOH A 88 214 89 HOH HOH . D 3 HOH A 89 215 90 HOH HOH . D 3 HOH A 90 216 91 HOH HOH . D 3 HOH A 91 217 92 HOH HOH . D 3 HOH A 92 218 93 HOH HOH . D 3 HOH A 93 219 94 HOH HOH . D 3 HOH A 94 220 95 HOH HOH . D 3 HOH A 95 221 96 HOH HOH . D 3 HOH A 96 222 97 HOH HOH . D 3 HOH A 97 223 98 HOH HOH . D 3 HOH A 98 224 99 HOH HOH . D 3 HOH A 99 225 100 HOH HOH . D 3 HOH A 100 226 101 HOH HOH . D 3 HOH A 101 227 102 HOH HOH . D 3 HOH A 102 228 103 HOH HOH . D 3 HOH A 103 229 104 HOH HOH . D 3 HOH A 104 230 105 HOH HOH . D 3 HOH A 105 231 106 HOH HOH . D 3 HOH A 106 232 107 HOH HOH . D 3 HOH A 107 233 108 HOH HOH . D 3 HOH A 108 234 109 HOH HOH . D 3 HOH A 109 235 110 HOH HOH . D 3 HOH A 110 236 111 HOH HOH . D 3 HOH A 111 237 112 HOH HOH . D 3 HOH A 112 238 113 HOH HOH . D 3 HOH A 113 239 114 HOH HOH . D 3 HOH A 114 240 115 HOH HOH . D 3 HOH A 115 241 116 HOH HOH . D 3 HOH A 116 242 117 HOH HOH . D 3 HOH A 117 243 118 HOH HOH . D 3 HOH A 118 244 119 HOH HOH . D 3 HOH A 119 245 120 HOH HOH . D 3 HOH A 120 246 121 HOH HOH . D 3 HOH A 121 247 122 HOH HOH . D 3 HOH A 122 248 123 HOH HOH . D 3 HOH A 123 249 124 HOH HOH . D 3 HOH A 124 250 125 HOH HOH . D 3 HOH A 125 251 126 HOH HOH . D 3 HOH A 126 252 127 HOH HOH . D 3 HOH A 127 253 128 HOH HOH . D 3 HOH A 128 254 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 16.645 31.93 7.144 1 14.7 ? FE HEC 126 A 1 HETATM 2 C CHA HEC . . . C 2 14.535 34.511 6.222 1 15.73 ? CHA HEC 126 A 1 HETATM 3 C CHB HEC . . . C 2 15.154 29.888 4.867 1 13.96 ? CHB HEC 126 A 1 HETATM 4 C CHC HEC . . . C 2 18.896 29.463 7.863 1 15.05 ? CHC HEC 126 A 1 HETATM 5 C CHD HEC . . . C 2 17.805 33.793 9.752 1 16.28 ? CHD HEC 126 A 1 HETATM 6 N NA HEC . . . C 2 15.155 32.155 5.81 1 14.77 ? NA HEC 126 A 1 HETATM 7 C C1A HEC . . . C 2 14.41 33.282 5.571 1 14.28 ? C1A HEC 126 A 1 HETATM 8 C C2A HEC . . . C 2 13.356 32.995 4.601 1 14.38 ? C2A HEC 126 A 1 HETATM 9 C C3A HEC . . . C 2 13.475 31.696 4.247 1 14.76 ? C3A HEC 126 A 1 HETATM 10 C C4A HEC . . . C 2 14.607 31.168 4.977 1 13.97 ? C4A HEC 126 A 1 HETATM 11 C CMA HEC . . . C 2 12.565 30.828 3.369 1 15.39 ? CMA HEC 126 A 1 HETATM 12 C CAA HEC . . . C 2 12.269 34.013 4.185 1 15.66 ? CAA HEC 126 A 1 HETATM 13 C CBA HEC . . . C 2 10.98 33.865 5.058 1 21.12 ? CBA HEC 126 A 1 HETATM 14 C CGA HEC . . . C 2 10.026 34.985 4.718 1 28.49 ? CGA HEC 126 A 1 HETATM 15 O O1A HEC . . . C 2 9.19 34.798 3.851 1 45.36 ? O1A HEC 126 A 1 HETATM 16 O O2A HEC . . . C 2 10.061 36.089 5.337 1 40.49 ? O2A HEC 126 A 1 HETATM 17 N NB HEC . . . C 2 16.986 30.081 6.445 1 13.95 ? NB HEC 126 A 1 HETATM 18 C C1B HEC . . . C 2 16.282 29.362 5.491 1 13.47 ? C1B HEC 126 A 1 HETATM 19 C C2B HEC . . . C 2 16.919 28.084 5.211 1 14.11 ? C2B HEC 126 A 1 HETATM 20 C C3B HEC . . . C 2 17.994 27.99 6.013 1 15.77 ? C3B HEC 126 A 1 HETATM 21 C C4B HEC . . . C 2 18.012 29.206 6.82 1 14.54 ? C4B HEC 126 A 1 HETATM 22 C CMB HEC . . . C 2 16.28 27.068 4.24 1 16.55 ? CMB HEC 126 A 1 HETATM 23 C CAB HEC . . . C 2 18.995 26.943 6.05 1 16.12 ? CAB HEC 126 A 1 HETATM 24 C CBB HEC . . . C 2 19.632 26.534 4.749 1 18.56 ? CBB HEC 126 A 1 HETATM 25 N NC HEC . . . C 2 18.006 31.652 8.542 1 13.87 ? NC HEC 126 A 1 HETATM 26 C C1C HEC . . . C 2 18.829 30.554 8.723 1 14.1 ? C1C HEC 126 A 1 HETATM 27 C C2C HEC . . . C 2 19.682 30.719 9.886 1 14.44 ? C2C HEC 126 A 1 HETATM 28 C C3C HEC . . . C 2 19.39 31.929 10.449 1 14.98 ? C3C HEC 126 A 1 HETATM 29 C C4C HEC . . . C 2 18.351 32.515 9.581 1 15.48 ? C4C HEC 126 A 1 HETATM 30 C CMC HEC . . . C 2 20.595 29.618 10.428 1 17.03 ? CMC HEC 126 A 1 HETATM 31 C CAC HEC . . . C 2 19.833 32.412 11.703 1 16.3 ? CAC HEC 126 A 1 HETATM 32 C CBC HEC . . . C 2 21.311 32.639 11.847 1 17.74 ? CBC HEC 126 A 1 HETATM 33 N ND HEC . . . C 2 16.3 33.782 7.795 1 16.34 ? ND HEC 126 A 1 HETATM 34 C C1D HEC . . . C 2 16.856 34.383 8.913 1 13.47 ? C1D HEC 126 A 1 HETATM 35 C C2D HEC . . . C 2 16.357 35.75 9.084 1 14.74 ? C2D HEC 126 A 1 HETATM 36 C C3D HEC . . . C 2 15.477 35.945 8.069 1 14.88 ? C3D HEC 126 A 1 HETATM 37 C C4D HEC . . . C 2 15.433 34.716 7.278 1 16.02 ? C4D HEC 126 A 1 HETATM 38 C CMD HEC . . . C 2 16.805 36.738 10.201 1 16.78 ? CMD HEC 126 A 1 HETATM 39 C CAD HEC . . . C 2 14.791 37.268 7.697 1 20.21 ? CAD HEC 126 A 1 HETATM 40 C CBD HEC . . . C 2 13.528 37.404 8.564 1 22.61 ? CBD HEC 126 A 1 HETATM 41 C CGD HEC . . . C 2 12.466 36.587 7.827 1 31.55 ? CGD HEC 126 A 1 HETATM 42 O O1D HEC . . . C 2 11.887 37.089 6.8 1 32.96 ? O1D HEC 126 A 1 HETATM 43 O O2D HEC . . . C 2 12.314 35.473 8.366 1 27.52 ? O2D HEC 126 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 488 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #