data_1JOH # _model_server_result.job_id w4kLcuASHI2YdmKJoKpDdA _model_server_result.datetime_utc '2024-12-26 19:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1joh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":21}' # _entry.id 1JOH # _exptl.entry_id 1JOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 32.042 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHANOL _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.9 _cell.angle_beta 96.64 _cell.angle_gamma 123.85 _cell.entry_id 1JOH _cell.length_a 26.53 _cell.length_b 28.82 _cell.length_c 9.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M 1 1 B,N,O,P,Q,R,S,T,U,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N PHE 2 A PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C PHE 2 A PHE 1 1_555 A N AIB 3 A AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C AIB 3 A AIB 2 1_555 A N AIB 4 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C AIB 4 A AIB 3 1_555 A N AIB 5 A AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale5 A C AIB 5 A AIB 4 1_555 A N DIV 6 A DIV 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 A C DIV 6 A DIV 5 1_555 A N GLY 7 A GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C LEU 8 A LEU 7 1_555 A N AIB 9 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C AIB 9 A AIB 8 1_555 A N AIB 10 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C AIB 10 A AIB 9 1_555 A N HYP 11 A HYP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C HYP 11 A HYP 10 1_555 A N GLN 12 A GLN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale11 A C GLN 12 A GLN 11 1_555 A N DIV 13 A DIV 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 A C DIV 13 A DIV 12 1_555 A N HYP 14 A HYP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale13 A C HYP 14 A HYP 13 1_555 A N AIB 15 A AIB 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale14 A C AIB 15 A AIB 14 1_555 A N PRO 16 A PRO 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale15 A C PRO 16 A PRO 15 1_555 A N PHL 17 A PHL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale16 L O MOH . A MOH 27 1_555 O C MOH . B MOH 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale17 B C ACE 1 B ACE 0 1_555 B N PHE 2 B PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C PHE 2 B PHE 1 1_555 B N AIB 3 B AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale19 B C AIB 3 B AIB 2 1_555 B N AIB 4 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C AIB 4 B AIB 3 1_555 B N AIB 5 B AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale21 B C AIB 5 B AIB 4 1_555 B N DIV 6 B DIV 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 B C DIV 6 B DIV 5 1_555 B N GLY 7 B GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale23 B C LEU 8 B LEU 7 1_555 B N AIB 9 B AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale24 B C AIB 9 B AIB 8 1_555 B N AIB 10 B AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale25 B C AIB 10 B AIB 9 1_555 B N HYP 11 B HYP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale26 B C HYP 11 B HYP 10 1_555 B N GLN 12 B GLN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale27 B C GLN 12 B GLN 11 1_555 B N DIV 13 B DIV 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale28 B C DIV 13 B DIV 12 1_555 B N HYP 14 B HYP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale29 B C HYP 14 B HYP 13 1_555 B N AIB 15 B AIB 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale30 B C AIB 15 B AIB 14 1_555 B N PRO 16 B PRO 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale31 B C PRO 16 B PRO 15 1_555 B N PHL 17 B PHL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C H4 O' _chem_comp.formula_weight 32.042 _chem_comp.id MOH _chem_comp.mon_nstd_flag . _chem_comp.name METHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O MOH sing 107 n n C H1 MOH sing 108 n n C H2 MOH sing 109 n n C H3 MOH sing 110 n n O HO MOH sing 111 n n # _atom_sites.entry_id 1JOH _atom_sites.fract_transf_matrix[1][1] 0.037693 _atom_sites.fract_transf_matrix[1][2] 0.025281 _atom_sites.fract_transf_matrix[1][3] 0.005782 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.04178 _atom_sites.fract_transf_matrix[2][3] 0.002293 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.111288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MOH A 1 18 18 MOH MOH . D 2 MOH A 1 19 19 MOH MOH . E 2 MOH A 1 20 20 MOH MOH . F 2 MOH A 1 21 21 MOH MOH . G 2 MOH A 1 22 22 MOH MOH . H 2 MOH A 1 23 23 MOH MOH . I 2 MOH A 1 24 24 MOH MOH . J 2 MOH A 1 25 25 MOH MOH . K 2 MOH A 1 26 26 MOH MOH . L 2 MOH A 1 27 27 MOH MOH . M 2 MOH A 1 28 28 MOH MOH . N 2 MOH B 1 18 18 MOH MOH . O 2 MOH B 1 19 19 MOH MOH . P 2 MOH B 1 20 20 MOH MOH . Q 2 MOH B 1 21 21 MOH MOH . R 2 MOH B 1 22 22 MOH MOH . S 2 MOH B 1 23 23 MOH MOH . T 2 MOH B 1 24 24 MOH MOH . U 2 MOH B 1 25 25 MOH MOH . V 2 MOH B 1 26 26 MOH MOH . W 2 MOH B 1 27 27 MOH MOH . X 2 MOH B 1 28 28 MOH MOH . Y 2 MOH B 1 29 29 MOH MOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MOH . . . F 2 -7.258 10.203 12.697 1 15.38 ? C MOH 21 A 1 HETATM 2 O O MOH . . . F 2 -7.658 11.552 12.569 1 23.12 ? O MOH 21 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #