data_1JP8
#
_model_server_result.job_id            rE4A86qUgaU8MYFF3_OaMw 
_model_server_result.datetime_utc      '2024-12-23 14:52:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":200}' 
#
_entry.id    1JP8 
#
_exptl.entry_id    1JP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.69 
_cell.angle_gamma         90 
_cell.entry_id            1JP8 
_cell.length_a            64.09 
_cell.length_b            30.8 
_cell.length_c            34.57 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 E FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc2 E FE HEM . A HEM 200 1_555 F O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1JP8 
_atom_sites.fract_transf_matrix[1][1]    0.015603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004383 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 201 SO4 SO4 . 
C 2 SO4 A 1 202 202 SO4 SO4 . 
D 2 SO4 A 1 203 203 SO4 SO4 . 
E 3 HEM A 1 200 200 HEM HEM . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 317 HOH HOH . 
F 4 HOH A 18 318 318 HOH HOH . 
F 4 HOH A 19 319 319 HOH HOH . 
F 4 HOH A 20 320 320 HOH HOH . 
F 4 HOH A 21 321 321 HOH HOH . 
F 4 HOH A 22 322 322 HOH HOH . 
F 4 HOH A 23 323 323 HOH HOH . 
F 4 HOH A 24 324 324 HOH HOH . 
F 4 HOH A 25 325 325 HOH HOH . 
F 4 HOH A 26 326 326 HOH HOH . 
F 4 HOH A 27 327 327 HOH HOH . 
F 4 HOH A 28 328 328 HOH HOH . 
F 4 HOH A 29 329 329 HOH HOH . 
F 4 HOH A 30 330 330 HOH HOH . 
F 4 HOH A 31 331 331 HOH HOH . 
F 4 HOH A 32 332 332 HOH HOH . 
F 4 HOH A 33 333 333 HOH HOH . 
F 4 HOH A 34 334 334 HOH HOH . 
F 4 HOH A 35 335 335 HOH HOH . 
F 4 HOH A 36 336 336 HOH HOH . 
F 4 HOH A 37 337 337 HOH HOH . 
F 4 HOH A 38 338 338 HOH HOH . 
F 4 HOH A 39 339 339 HOH HOH . 
F 4 HOH A 40 340 340 HOH HOH . 
F 4 HOH A 41 341 341 HOH HOH . 
F 4 HOH A 42 342 342 HOH HOH . 
F 4 HOH A 43 343 343 HOH HOH . 
F 4 HOH A 44 344 344 HOH HOH . 
F 4 HOH A 45 345 345 HOH HOH . 
F 4 HOH A 46 346 346 HOH HOH . 
F 4 HOH A 47 347 347 HOH HOH . 
F 4 HOH A 48 348 348 HOH HOH . 
F 4 HOH A 49 349 349 HOH HOH . 
F 4 HOH A 50 350 350 HOH HOH . 
F 4 HOH A 51 351 351 HOH HOH . 
F 4 HOH A 52 352 352 HOH HOH . 
F 4 HOH A 53 353 353 HOH HOH . 
F 4 HOH A 54 354 354 HOH HOH . 
F 4 HOH A 55 355 355 HOH HOH . 
F 4 HOH A 56 356 356 HOH HOH . 
F 4 HOH A 57 357 357 HOH HOH . 
F 4 HOH A 58 358 358 HOH HOH . 
F 4 HOH A 59 359 359 HOH HOH . 
F 4 HOH A 60 360 360 HOH HOH . 
F 4 HOH A 61 361 361 HOH HOH . 
F 4 HOH A 62 362 362 HOH HOH . 
F 4 HOH A 63 363 363 HOH HOH . 
F 4 HOH A 64 364 364 HOH HOH . 
F 4 HOH A 65 365 365 HOH HOH . 
F 4 HOH A 66 366 366 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . E 3 15.984 31.134 5.08 1 9.76 ? CHA HEM 200 A 1 
HETATM 2 C CHB HEM . . . E 3 13.872 28.021 8.101 1 6.78 ? CHB HEM 200 A 1 
HETATM 3 C CHC HEM . . . E 3 13.472 24.815 4.526 1 7.84 ? CHC HEM 200 A 1 
HETATM 4 C CHD HEM . . . E 3 15.582 27.923 1.536 1 10.17 ? CHD HEM 200 A 1 
HETATM 5 C C1A HEM . . . E 3 15.429 30.564 6.225 1 9.94 ? C1A HEM 200 A 1 
HETATM 6 C C2A HEM . . . E 3 15.358 31.21 7.544 1 10.47 ? C2A HEM 200 A 1 
HETATM 7 C C3A HEM . . . E 3 14.755 30.303 8.37 1 8.39 ? C3A HEM 200 A 1 
HETATM 8 C C4A HEM . . . E 3 14.468 29.145 7.601 1 8.3 ? C4A HEM 200 A 1 
HETATM 9 C CMA HEM . . . E 3 14.439 30.464 9.838 1 8.16 ? CMA HEM 200 A 1 
HETATM 10 C CAA HEM . . . E 3 15.855 32.578 7.858 1 11.23 ? CAA HEM 200 A 1 
HETATM 11 C CBA HEM . . . E 3 14.687 33.606 8.041 1 13.83 ? CBA HEM 200 A 1 
HETATM 12 C CGA HEM . . . E 3 13.671 33.469 6.939 1 17.1 ? CGA HEM 200 A 1 
HETATM 13 O O1A HEM . . . E 3 13.892 33.923 5.806 1 18.21 ? O1A HEM 200 A 1 
HETATM 14 O O2A HEM . . . E 3 12.582 32.858 7.214 1 19.05 ? O2A HEM 200 A 1 
HETATM 15 C C1B HEM . . . E 3 13.581 26.874 7.382 1 7.01 ? C1B HEM 200 A 1 
HETATM 16 C C2B HEM . . . E 3 12.947 25.663 7.939 1 7.65 ? C2B HEM 200 A 1 
HETATM 17 C C3B HEM . . . E 3 12.837 24.781 6.945 1 5.86 ? C3B HEM 200 A 1 
HETATM 18 C C4B HEM . . . E 3 13.394 25.424 5.777 1 6.86 ? C4B HEM 200 A 1 
HETATM 19 C CMB HEM . . . E 3 12.535 25.533 9.382 1 7.93 ? CMB HEM 200 A 1 
HETATM 20 C CAB HEM . . . E 3 12.264 23.383 6.972 1 3.46 ? CAB HEM 200 A 1 
HETATM 21 C CBB HEM . . . E 3 12.637 22.456 7.846 1 2.23 ? CBB HEM 200 A 1 
HETATM 22 C C1C HEM . . . E 3 14.007 25.362 3.376 1 7.69 ? C1C HEM 200 A 1 
HETATM 23 C C2C HEM . . . E 3 14.095 24.699 2.114 1 9.78 ? C2C HEM 200 A 1 
HETATM 24 C C3C HEM . . . E 3 14.702 25.585 1.283 1 11.05 ? C3C HEM 200 A 1 
HETATM 25 C C4C HEM . . . E 3 14.964 26.782 2.035 1 9.08 ? C4C HEM 200 A 1 
HETATM 26 C CMC HEM . . . E 3 13.605 23.301 1.864 1 8.49 ? CMC HEM 200 A 1 
HETATM 27 C CAC HEM . . . E 3 15.098 25.494 -0.155 1 11.59 ? CAC HEM 200 A 1 
HETATM 28 C CBC HEM . . . E 3 14.934 24.478 -0.955 1 15.78 ? CBC HEM 200 A 1 
HETATM 29 C C1D HEM . . . E 3 15.886 29.089 2.209 1 11.4 ? C1D HEM 200 A 1 
HETATM 30 C C2D HEM . . . E 3 16.538 30.218 1.65 1 12.35 ? C2D HEM 200 A 1 
HETATM 31 C C3D HEM . . . E 3 16.663 31.129 2.665 1 11.29 ? C3D HEM 200 A 1 
HETATM 32 C C4D HEM . . . E 3 16.066 30.545 3.837 1 10.76 ? C4D HEM 200 A 1 
HETATM 33 C CMD HEM . . . E 3 17.007 30.353 0.226 1 10.12 ? CMD HEM 200 A 1 
HETATM 34 C CAD HEM . . . E 3 17.325 32.465 2.551 1 14.26 ? CAD HEM 200 A 1 
HETATM 35 C CBD HEM . . . E 3 18.835 32.198 2.876 1 18.48 ? CBD HEM 200 A 1 
HETATM 36 C CGD HEM . . . E 3 19.738 33.386 2.829 1 22 ? CGD HEM 200 A 1 
HETATM 37 O O1D HEM . . . E 3 20.167 33.85 1.758 1 25.47 ? O1D HEM 200 A 1 
HETATM 38 O O2D HEM . . . E 3 20.074 33.896 3.934 1 24.77 ? O2D HEM 200 A 1 
HETATM 39 N NA HEM . . . E 3 14.873 29.3 6.278 1 9.07 ? NA HEM 200 A 1 
HETATM 40 N NB HEM . . . E 3 13.842 26.678 6.028 1 8.15 ? NB HEM 200 A 1 
HETATM 41 N NC HEM . . . E 3 14.546 26.635 3.301 1 10.16 ? NC HEM 200 A 1 
HETATM 42 N ND HEM . . . E 3 15.603 29.286 3.52 1 9.86 ? ND HEM 200 A 1 
HETATM 43 FE FE HEM . . . E 3 14.696 27.986 4.775 1 11.49 ? FE HEM 200 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#