data_1JPA # _model_server_result.job_id smc-6zXJi6w2qkhb7C-q7A _model_server_result.datetime_utc '2024-10-10 15:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1JPA # _exptl.entry_id 1JPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 112.95 _cell.angle_beta 103.17 _cell.angle_gamma 91.58 _cell.entry_id 1JPA _cell.length_a 47.052 _cell.length_b 57.616 _cell.length_c 67.742 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1JPA _atom_sites.fract_transf_matrix[1][1] 0.021253 _atom_sites.fract_transf_matrix[1][2] 0.000586 _atom_sites.fract_transf_matrix[1][3] 0.005706 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017363 _atom_sites.fract_transf_matrix[2][3] 0.007738 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 400 400 ANP ANP . D 2 ANP B 1 401 401 ANP ANP . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 2 2 HOH HOH . E 3 HOH A 3 3 3 HOH HOH . E 3 HOH A 4 4 4 HOH HOH . E 3 HOH A 5 5 5 HOH HOH . E 3 HOH A 6 6 6 HOH HOH . E 3 HOH A 7 7 7 HOH HOH . E 3 HOH A 8 8 8 HOH HOH . E 3 HOH A 9 9 9 HOH HOH . E 3 HOH A 10 10 10 HOH HOH . E 3 HOH A 11 11 11 HOH HOH . E 3 HOH A 12 12 12 HOH HOH . E 3 HOH A 13 13 13 HOH HOH . E 3 HOH A 14 14 14 HOH HOH . E 3 HOH A 15 15 15 HOH HOH . E 3 HOH A 16 16 16 HOH HOH . E 3 HOH A 17 17 17 HOH HOH . E 3 HOH A 18 18 18 HOH HOH . E 3 HOH A 19 19 19 HOH HOH . E 3 HOH A 20 20 20 HOH HOH . E 3 HOH A 21 21 21 HOH HOH . E 3 HOH A 22 22 22 HOH HOH . E 3 HOH A 23 23 23 HOH HOH . E 3 HOH A 24 24 24 HOH HOH . E 3 HOH A 25 25 25 HOH HOH . E 3 HOH A 26 26 26 HOH HOH . E 3 HOH A 27 27 27 HOH HOH . E 3 HOH A 28 28 28 HOH HOH . E 3 HOH A 29 29 29 HOH HOH . E 3 HOH A 30 30 30 HOH HOH . E 3 HOH A 31 31 31 HOH HOH . E 3 HOH A 32 32 32 HOH HOH . E 3 HOH A 33 33 33 HOH HOH . E 3 HOH A 34 34 34 HOH HOH . E 3 HOH A 35 35 35 HOH HOH . E 3 HOH A 36 36 36 HOH HOH . E 3 HOH A 37 37 37 HOH HOH . E 3 HOH A 38 38 38 HOH HOH . E 3 HOH A 39 39 39 HOH HOH . E 3 HOH A 40 40 40 HOH HOH . E 3 HOH A 41 41 41 HOH HOH . E 3 HOH A 42 42 42 HOH HOH . E 3 HOH A 43 43 43 HOH HOH . E 3 HOH A 44 44 44 HOH HOH . E 3 HOH A 45 45 45 HOH HOH . E 3 HOH A 46 46 46 HOH HOH . E 3 HOH A 47 48 48 HOH HOH . E 3 HOH A 48 49 49 HOH HOH . E 3 HOH A 49 50 50 HOH HOH . E 3 HOH A 50 51 51 HOH HOH . E 3 HOH A 51 52 52 HOH HOH . E 3 HOH A 52 53 53 HOH HOH . E 3 HOH A 53 54 54 HOH HOH . E 3 HOH A 54 55 55 HOH HOH . E 3 HOH A 55 56 56 HOH HOH . E 3 HOH A 56 57 57 HOH HOH . E 3 HOH A 57 58 58 HOH HOH . E 3 HOH A 58 59 59 HOH HOH . E 3 HOH A 59 60 60 HOH HOH . E 3 HOH A 60 61 61 HOH HOH . E 3 HOH A 61 62 62 HOH HOH . E 3 HOH A 62 63 63 HOH HOH . E 3 HOH A 63 64 64 HOH HOH . E 3 HOH A 64 65 65 HOH HOH . E 3 HOH A 65 66 66 HOH HOH . E 3 HOH A 66 67 67 HOH HOH . E 3 HOH A 67 68 68 HOH HOH . E 3 HOH A 68 69 69 HOH HOH . E 3 HOH A 69 70 70 HOH HOH . E 3 HOH A 70 71 71 HOH HOH . E 3 HOH A 71 72 72 HOH HOH . E 3 HOH A 72 73 73 HOH HOH . E 3 HOH A 73 74 74 HOH HOH . E 3 HOH A 74 75 75 HOH HOH . E 3 HOH A 75 76 76 HOH HOH . E 3 HOH A 76 78 78 HOH HOH . E 3 HOH A 77 79 79 HOH HOH . E 3 HOH A 78 81 81 HOH HOH . E 3 HOH A 79 82 82 HOH HOH . E 3 HOH A 80 83 83 HOH HOH . E 3 HOH A 81 84 84 HOH HOH . E 3 HOH A 82 85 85 HOH HOH . E 3 HOH A 83 86 86 HOH HOH . E 3 HOH A 84 87 87 HOH HOH . E 3 HOH A 85 88 88 HOH HOH . E 3 HOH A 86 89 89 HOH HOH . E 3 HOH A 87 90 90 HOH HOH . E 3 HOH A 88 91 91 HOH HOH . E 3 HOH A 89 92 92 HOH HOH . E 3 HOH A 90 93 93 HOH HOH . E 3 HOH A 91 94 94 HOH HOH . E 3 HOH A 92 95 95 HOH HOH . E 3 HOH A 93 97 97 HOH HOH . E 3 HOH A 94 98 98 HOH HOH . E 3 HOH A 95 99 99 HOH HOH . E 3 HOH A 96 100 100 HOH HOH . E 3 HOH A 97 101 101 HOH HOH . E 3 HOH A 98 102 102 HOH HOH . E 3 HOH A 99 103 103 HOH HOH . E 3 HOH A 100 104 104 HOH HOH . E 3 HOH A 101 105 105 HOH HOH . E 3 HOH A 102 106 106 HOH HOH . E 3 HOH A 103 107 107 HOH HOH . E 3 HOH A 104 108 108 HOH HOH . E 3 HOH A 105 109 109 HOH HOH . E 3 HOH A 106 110 110 HOH HOH . E 3 HOH A 107 111 111 HOH HOH . E 3 HOH A 108 112 112 HOH HOH . E 3 HOH A 109 113 113 HOH HOH . E 3 HOH A 110 114 114 HOH HOH . E 3 HOH A 111 115 115 HOH HOH . E 3 HOH A 112 116 116 HOH HOH . E 3 HOH A 113 117 117 HOH HOH . E 3 HOH A 114 118 118 HOH HOH . E 3 HOH A 115 119 119 HOH HOH . E 3 HOH A 116 120 120 HOH HOH . E 3 HOH A 117 121 121 HOH HOH . E 3 HOH A 118 122 122 HOH HOH . E 3 HOH A 119 123 123 HOH HOH . E 3 HOH A 120 124 124 HOH HOH . E 3 HOH A 121 125 125 HOH HOH . E 3 HOH A 122 126 126 HOH HOH . E 3 HOH A 123 127 127 HOH HOH . E 3 HOH A 124 128 128 HOH HOH . E 3 HOH A 125 129 129 HOH HOH . E 3 HOH A 126 130 130 HOH HOH . E 3 HOH A 127 131 131 HOH HOH . E 3 HOH A 128 132 132 HOH HOH . E 3 HOH A 129 133 133 HOH HOH . E 3 HOH A 130 134 134 HOH HOH . E 3 HOH A 131 135 135 HOH HOH . E 3 HOH A 132 136 136 HOH HOH . E 3 HOH A 133 137 137 HOH HOH . E 3 HOH A 134 138 138 HOH HOH . E 3 HOH A 135 139 139 HOH HOH . E 3 HOH A 136 140 140 HOH HOH . E 3 HOH A 137 141 141 HOH HOH . E 3 HOH A 138 142 142 HOH HOH . E 3 HOH A 139 166 166 HOH HOH . E 3 HOH A 140 226 226 HOH HOH . E 3 HOH A 141 255 255 HOH HOH . F 3 HOH B 1 47 47 HOH HOH . F 3 HOH B 2 77 77 HOH HOH . F 3 HOH B 3 80 80 HOH HOH . F 3 HOH B 4 96 96 HOH HOH . F 3 HOH B 5 143 143 HOH HOH . F 3 HOH B 6 144 144 HOH HOH . F 3 HOH B 7 145 145 HOH HOH . F 3 HOH B 8 146 146 HOH HOH . F 3 HOH B 9 147 147 HOH HOH . F 3 HOH B 10 148 148 HOH HOH . F 3 HOH B 11 149 149 HOH HOH . F 3 HOH B 12 150 150 HOH HOH . F 3 HOH B 13 151 151 HOH HOH . F 3 HOH B 14 152 152 HOH HOH . F 3 HOH B 15 153 153 HOH HOH . F 3 HOH B 16 154 154 HOH HOH . F 3 HOH B 17 155 155 HOH HOH . F 3 HOH B 18 156 156 HOH HOH . F 3 HOH B 19 157 157 HOH HOH . F 3 HOH B 20 158 158 HOH HOH . F 3 HOH B 21 159 159 HOH HOH . F 3 HOH B 22 160 160 HOH HOH . F 3 HOH B 23 161 161 HOH HOH . F 3 HOH B 24 162 162 HOH HOH . F 3 HOH B 25 163 163 HOH HOH . F 3 HOH B 26 164 164 HOH HOH . F 3 HOH B 27 165 165 HOH HOH . F 3 HOH B 28 167 167 HOH HOH . F 3 HOH B 29 168 168 HOH HOH . F 3 HOH B 30 169 169 HOH HOH . F 3 HOH B 31 170 170 HOH HOH . F 3 HOH B 32 171 171 HOH HOH . F 3 HOH B 33 172 172 HOH HOH . F 3 HOH B 34 173 173 HOH HOH . F 3 HOH B 35 174 174 HOH HOH . F 3 HOH B 36 175 175 HOH HOH . F 3 HOH B 37 176 176 HOH HOH . F 3 HOH B 38 177 177 HOH HOH . F 3 HOH B 39 178 178 HOH HOH . F 3 HOH B 40 179 179 HOH HOH . F 3 HOH B 41 180 180 HOH HOH . F 3 HOH B 42 181 181 HOH HOH . F 3 HOH B 43 182 182 HOH HOH . F 3 HOH B 44 183 183 HOH HOH . F 3 HOH B 45 184 184 HOH HOH . F 3 HOH B 46 185 185 HOH HOH . F 3 HOH B 47 186 186 HOH HOH . F 3 HOH B 48 187 187 HOH HOH . F 3 HOH B 49 188 188 HOH HOH . F 3 HOH B 50 189 189 HOH HOH . F 3 HOH B 51 190 190 HOH HOH . F 3 HOH B 52 191 191 HOH HOH . F 3 HOH B 53 192 192 HOH HOH . F 3 HOH B 54 193 193 HOH HOH . F 3 HOH B 55 194 194 HOH HOH . F 3 HOH B 56 195 195 HOH HOH . F 3 HOH B 57 196 196 HOH HOH . F 3 HOH B 58 197 197 HOH HOH . F 3 HOH B 59 198 198 HOH HOH . F 3 HOH B 60 199 199 HOH HOH . F 3 HOH B 61 200 200 HOH HOH . F 3 HOH B 62 201 201 HOH HOH . F 3 HOH B 63 202 202 HOH HOH . F 3 HOH B 64 203 203 HOH HOH . F 3 HOH B 65 204 204 HOH HOH . F 3 HOH B 66 205 205 HOH HOH . F 3 HOH B 67 206 206 HOH HOH . F 3 HOH B 68 207 207 HOH HOH . F 3 HOH B 69 208 208 HOH HOH . F 3 HOH B 70 209 209 HOH HOH . F 3 HOH B 71 210 210 HOH HOH . F 3 HOH B 72 211 211 HOH HOH . F 3 HOH B 73 212 212 HOH HOH . F 3 HOH B 74 213 213 HOH HOH . F 3 HOH B 75 214 214 HOH HOH . F 3 HOH B 76 215 215 HOH HOH . F 3 HOH B 77 216 216 HOH HOH . F 3 HOH B 78 217 217 HOH HOH . F 3 HOH B 79 218 218 HOH HOH . F 3 HOH B 80 219 219 HOH HOH . F 3 HOH B 81 220 220 HOH HOH . F 3 HOH B 82 221 221 HOH HOH . F 3 HOH B 83 222 222 HOH HOH . F 3 HOH B 84 223 223 HOH HOH . F 3 HOH B 85 224 224 HOH HOH . F 3 HOH B 86 225 225 HOH HOH . F 3 HOH B 87 227 227 HOH HOH . F 3 HOH B 88 228 228 HOH HOH . F 3 HOH B 89 229 229 HOH HOH . F 3 HOH B 90 230 230 HOH HOH . F 3 HOH B 91 231 231 HOH HOH . F 3 HOH B 92 232 232 HOH HOH . F 3 HOH B 93 233 233 HOH HOH . F 3 HOH B 94 234 234 HOH HOH . F 3 HOH B 95 235 235 HOH HOH . F 3 HOH B 96 236 236 HOH HOH . F 3 HOH B 97 237 237 HOH HOH . F 3 HOH B 98 238 238 HOH HOH . F 3 HOH B 99 239 239 HOH HOH . F 3 HOH B 100 240 240 HOH HOH . F 3 HOH B 101 241 241 HOH HOH . F 3 HOH B 102 242 242 HOH HOH . F 3 HOH B 103 243 243 HOH HOH . F 3 HOH B 104 244 244 HOH HOH . F 3 HOH B 105 245 245 HOH HOH . F 3 HOH B 106 246 246 HOH HOH . F 3 HOH B 107 247 247 HOH HOH . F 3 HOH B 108 248 248 HOH HOH . F 3 HOH B 109 249 249 HOH HOH . F 3 HOH B 110 250 250 HOH HOH . F 3 HOH B 111 251 251 HOH HOH . F 3 HOH B 112 252 252 HOH HOH . F 3 HOH B 113 253 253 HOH HOH . F 3 HOH B 114 254 254 HOH HOH . F 3 HOH B 115 256 256 HOH HOH . F 3 HOH B 116 257 257 HOH HOH . F 3 HOH B 117 258 258 HOH HOH . F 3 HOH B 118 259 259 HOH HOH . F 3 HOH B 119 260 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ANP . . . C 2 -0.851 -10.798 5.259 1 39.77 ? N9 ANP 400 A 1 HETATM 2 C C8 ANP . . . C 2 -1.796 -10.256 4.422 1 40.29 ? C8 ANP 400 A 1 HETATM 3 N N7 ANP . . . C 2 -1.579 -10.472 3.161 1 40.07 ? N7 ANP 400 A 1 HETATM 4 C C5 ANP . . . C 2 -0.435 -11.194 3.14 1 40.38 ? C5 ANP 400 A 1 HETATM 5 C C6 ANP . . . C 2 0.315 -11.732 2.094 1 41.06 ? C6 ANP 400 A 1 HETATM 6 N N6 ANP . . . C 2 -0.064 -11.571 0.82 1 41.76 ? N6 ANP 400 A 1 HETATM 7 N N1 ANP . . . C 2 1.443 -12.423 2.453 1 39.83 ? N1 ANP 400 A 1 HETATM 8 C C2 ANP . . . C 2 1.765 -12.544 3.743 1 41.03 ? C2 ANP 400 A 1 HETATM 9 N N3 ANP . . . C 2 1.149 -12.087 4.816 1 41.62 ? N3 ANP 400 A 1 HETATM 10 C C4 ANP . . . C 2 0.037 -11.411 4.423 1 40.49 ? C4 ANP 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #