data_1JPJ # _model_server_result.job_id IAEJBWbcayCb8h1iwDKNsw _model_server_result.datetime_utc '2024-12-26 23:13:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":967}' # _entry.id 1JPJ # _exptl.entry_id 1JPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JPJ _cell.length_a 52.69 _cell.length_b 60.41 _cell.length_c 86.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 116 n n PG O2G GNP sing 117 n n PG O3G GNP sing 118 n n PG N3B GNP sing 119 n n O2G HOG2 GNP sing 120 n n O3G HOG3 GNP sing 121 n n N3B PB GNP sing 122 n n N3B HNB3 GNP sing 123 n n PB O1B GNP doub 124 n n PB O2B GNP sing 125 n n PB O3A GNP sing 126 n n O2B HOB2 GNP sing 127 n n O3A PA GNP sing 128 n n PA O1A GNP doub 129 n n PA O2A GNP sing 130 n n PA O5' GNP sing 131 n n O2A HOA2 GNP sing 132 n n O5' C5' GNP sing 133 n n C5' C4' GNP sing 134 n n C5' "H5'2" GNP sing 135 n n C5' "H5'1" GNP sing 136 n n C4' O4' GNP sing 137 n n C4' C3' GNP sing 138 n n C4' H4' GNP sing 139 n n O4' C1' GNP sing 140 n n C3' O3' GNP sing 141 n n C3' C2' GNP sing 142 n n C3' H3' GNP sing 143 n n O3' HO3' GNP sing 144 n n C2' O2' GNP sing 145 n n C2' C1' GNP sing 146 n n C2' H2' GNP sing 147 n n O2' HO2' GNP sing 148 n n C1' N9 GNP sing 149 n n C1' H1' GNP sing 150 n n N9 C8 GNP sing 151 n y N9 C4 GNP sing 152 n y C8 N7 GNP doub 153 n y C8 H8 GNP sing 154 n n N7 C5 GNP sing 155 n y C5 C6 GNP sing 156 n y C5 C4 GNP doub 157 n y C6 O6 GNP doub 158 n n C6 N1 GNP sing 159 n y N1 C2 GNP sing 160 n y N1 HN1 GNP sing 161 n n C2 N2 GNP sing 162 n n C2 N3 GNP doub 163 n y N2 HN21 GNP sing 164 n n N2 HN22 GNP sing 165 n n N3 C4 GNP sing 166 n y # _atom_sites.entry_id 1JPJ _atom_sites.fract_transf_matrix[1][1] 0.018979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 967 967 GNP GNP . C 3 HOH A 1 1000 1000 HOH HOH . C 3 HOH A 2 1001 1001 HOH HOH . C 3 HOH A 3 1002 1002 HOH HOH . C 3 HOH A 4 1003 1003 HOH HOH . C 3 HOH A 5 1004 1004 HOH HOH . C 3 HOH A 6 1005 1005 HOH HOH . C 3 HOH A 7 1006 1006 HOH HOH . C 3 HOH A 8 1007 1007 HOH HOH . C 3 HOH A 9 1008 1008 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1016 1016 HOH HOH . C 3 HOH A 16 1017 1017 HOH HOH . C 3 HOH A 17 1018 1018 HOH HOH . C 3 HOH A 18 1019 1019 HOH HOH . C 3 HOH A 19 1020 1020 HOH HOH . C 3 HOH A 20 1021 1021 HOH HOH . C 3 HOH A 21 1022 1022 HOH HOH . C 3 HOH A 22 1023 1023 HOH HOH . C 3 HOH A 23 1024 1024 HOH HOH . C 3 HOH A 24 1025 1025 HOH HOH . C 3 HOH A 25 1026 1026 HOH HOH . C 3 HOH A 26 1028 1028 HOH HOH . C 3 HOH A 27 1029 1029 HOH HOH . C 3 HOH A 28 1031 1031 HOH HOH . C 3 HOH A 29 1032 1032 HOH HOH . C 3 HOH A 30 1033 1033 HOH HOH . C 3 HOH A 31 1035 1035 HOH HOH . C 3 HOH A 32 1037 1037 HOH HOH . C 3 HOH A 33 1039 1039 HOH HOH . C 3 HOH A 34 1040 1040 HOH HOH . C 3 HOH A 35 1041 1041 HOH HOH . C 3 HOH A 36 1042 1042 HOH HOH . C 3 HOH A 37 1043 1043 HOH HOH . C 3 HOH A 38 1044 1044 HOH HOH . C 3 HOH A 39 1045 1045 HOH HOH . C 3 HOH A 40 1046 1046 HOH HOH . C 3 HOH A 41 1047 1047 HOH HOH . C 3 HOH A 42 1048 1048 HOH HOH . C 3 HOH A 43 1049 1049 HOH HOH . C 3 HOH A 44 1050 1050 HOH HOH . C 3 HOH A 45 1051 1051 HOH HOH . C 3 HOH A 46 1052 1052 HOH HOH . C 3 HOH A 47 1053 1053 HOH HOH . C 3 HOH A 48 1054 1054 HOH HOH . C 3 HOH A 49 1055 1055 HOH HOH . C 3 HOH A 50 1056 1056 HOH HOH . C 3 HOH A 51 1058 1058 HOH HOH . C 3 HOH A 52 1059 1059 HOH HOH . C 3 HOH A 53 1061 1061 HOH HOH . C 3 HOH A 54 1063 1063 HOH HOH . C 3 HOH A 55 1064 1064 HOH HOH . C 3 HOH A 56 1065 1065 HOH HOH . C 3 HOH A 57 1069 1069 HOH HOH . C 3 HOH A 58 1070 1070 HOH HOH . C 3 HOH A 59 1071 1071 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 48.803 12.424 29.999 1 29.71 ? PG GNP 967 A 1 HETATM 2 O O1G GNP . . . B 2 48.079 12.394 28.681 1 26.24 ? O1G GNP 967 A 1 HETATM 3 O O2G GNP . . . B 2 47.845 12.662 31.131 1 10.64 ? O2G GNP 967 A 1 HETATM 4 O O3G GNP . . . B 2 49.858 13.492 29.983 1 35.87 ? O3G GNP 967 A 1 HETATM 5 N N3B GNP . . . B 2 49.591 10.918 30.258 1 28.46 ? N3B GNP 967 A 1 HETATM 6 P PB GNP . . . B 2 49.154 9.418 29.536 1 14.38 ? PB GNP 967 A 1 HETATM 7 O O1B GNP . . . B 2 49.259 8.351 30.581 1 18.99 ? O1B GNP 967 A 1 HETATM 8 O O2B GNP . . . B 2 47.869 9.557 28.785 1 13.01 ? O2B GNP 967 A 1 HETATM 9 O O3A GNP . . . B 2 50.358 9.243 28.487 1 17.81 ? O3A GNP 967 A 1 HETATM 10 P PA GNP . . . B 2 51.062 10.327 27.529 1 23.67 ? PA GNP 967 A 1 HETATM 11 O O1A GNP . . . B 2 50.045 11.356 27.141 1 18.69 ? O1A GNP 967 A 1 HETATM 12 O O2A GNP . . . B 2 52.346 10.774 28.163 1 14.71 ? O2A GNP 967 A 1 HETATM 13 O O5' GNP . . . B 2 51.413 9.447 26.228 1 25.29 ? O5' GNP 967 A 1 HETATM 14 C C5' GNP . . . B 2 50.482 8.453 25.709 1 19.99 ? C5' GNP 967 A 1 HETATM 15 C C4' GNP . . . B 2 51.247 7.425 24.847 1 20.43 ? C4' GNP 967 A 1 HETATM 16 O O4' GNP . . . B 2 51.788 8.072 23.675 1 27.05 ? O4' GNP 967 A 1 HETATM 17 C C3' GNP . . . B 2 52.428 6.702 25.56 1 19.72 ? C3' GNP 967 A 1 HETATM 18 O O3' GNP . . . B 2 52.367 5.283 25.281 1 23.78 ? O3' GNP 967 A 1 HETATM 19 C C2' GNP . . . B 2 53.655 7.396 24.953 1 20.16 ? C2' GNP 967 A 1 HETATM 20 O O2' GNP . . . B 2 54.765 6.504 24.819 1 15.07 ? O2' GNP 967 A 1 HETATM 21 C C1' GNP . . . B 2 53.173 7.751 23.536 1 21.86 ? C1' GNP 967 A 1 HETATM 22 N N9 GNP . . . B 2 53.877 8.928 22.953 1 21.07 ? N9 GNP 967 A 1 HETATM 23 C C8 GNP . . . B 2 54.137 10.179 23.519 1 24.54 ? C8 GNP 967 A 1 HETATM 24 N N7 GNP . . . B 2 54.774 11.009 22.755 1 11.58 ? N7 GNP 967 A 1 HETATM 25 C C5 GNP . . . B 2 54.973 10.28 21.558 1 17.35 ? C5 GNP 967 A 1 HETATM 26 C C6 GNP . . . B 2 55.626 10.645 20.297 1 10.83 ? C6 GNP 967 A 1 HETATM 27 O O6 GNP . . . B 2 56.168 11.71 19.985 1 13.5 ? O6 GNP 967 A 1 HETATM 28 N N1 GNP . . . B 2 55.599 9.601 19.354 1 11.58 ? N1 GNP 967 A 1 HETATM 29 C C2 GNP . . . B 2 55.023 8.34 19.551 1 8.37 ? C2 GNP 967 A 1 HETATM 30 N N2 GNP . . . B 2 55.083 7.453 18.539 1 3.65 ? N2 GNP 967 A 1 HETATM 31 N N3 GNP . . . B 2 54.417 7.997 20.717 1 12.67 ? N3 GNP 967 A 1 HETATM 32 C C4 GNP . . . B 2 54.422 8.998 21.677 1 17.79 ? C4 GNP 967 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 676 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #