data_1JQD # _model_server_result.job_id 0x-JL73jFpx6Y-_dKTRp1w _model_server_result.datetime_utc '2024-11-04 23:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1JQD # _exptl.entry_id 1JQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 111.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JQD _cell.length_a 131.75 _cell.length_b 131.75 _cell.length_c 64.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C5 H9 N3' _chem_comp.formula_weight 111.145 _chem_comp.id HSM _chem_comp.mon_nstd_flag . _chem_comp.name HISTAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSM sing 152 n n N H1 HSM sing 153 n n N H2 HSM sing 154 n n CA CB HSM sing 155 n n CA HA1 HSM sing 156 n n CA HA2 HSM sing 157 n n CB CG HSM sing 158 n n CB HB1 HSM sing 159 n n CB HB2 HSM sing 160 n n CG ND1 HSM sing 161 n y CG CD2 HSM doub 162 n y ND1 CE1 HSM doub 163 n y CD2 NE2 HSM sing 164 n y CD2 HD2 HSM sing 165 n n CE1 NE2 HSM sing 166 n y CE1 HE1 HSM sing 167 n n NE2 HE2 HSM sing 168 n n # _atom_sites.entry_id 1JQD _atom_sites.fract_transf_matrix[1][1] 0.00759 _atom_sites.fract_transf_matrix[1][2] 0.004382 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 400 400 SAH SAH . D 3 HSM A 1 600 600 HSM HSM . E 2 SAH B 1 401 401 SAH SAH . F 3 HSM B 1 601 601 HSM HSM . G 4 HOH A 1 601 32 HOH HOH . G 4 HOH A 2 602 88 HOH HOH . G 4 HOH A 3 603 103 HOH HOH . G 4 HOH A 4 604 122 HOH HOH . G 4 HOH A 5 605 123 HOH HOH . G 4 HOH A 6 606 124 HOH HOH . G 4 HOH A 7 607 125 HOH HOH . G 4 HOH A 8 608 126 HOH HOH . G 4 HOH A 9 609 127 HOH HOH . G 4 HOH A 10 610 129 HOH HOH . G 4 HOH A 11 611 130 HOH HOH . G 4 HOH A 12 612 131 HOH HOH . G 4 HOH A 13 613 132 HOH HOH . G 4 HOH A 14 614 133 HOH HOH . G 4 HOH A 15 615 134 HOH HOH . G 4 HOH A 16 616 135 HOH HOH . G 4 HOH A 17 617 136 HOH HOH . G 4 HOH A 18 618 137 HOH HOH . G 4 HOH A 19 619 138 HOH HOH . G 4 HOH A 20 620 139 HOH HOH . G 4 HOH A 21 621 140 HOH HOH . G 4 HOH A 22 622 141 HOH HOH . G 4 HOH A 23 623 142 HOH HOH . G 4 HOH A 24 624 143 HOH HOH . G 4 HOH A 25 625 144 HOH HOH . G 4 HOH A 26 626 145 HOH HOH . G 4 HOH A 27 627 146 HOH HOH . G 4 HOH A 28 628 147 HOH HOH . G 4 HOH A 29 629 148 HOH HOH . G 4 HOH A 30 630 149 HOH HOH . G 4 HOH A 31 631 150 HOH HOH . G 4 HOH A 32 632 151 HOH HOH . G 4 HOH A 33 633 152 HOH HOH . G 4 HOH A 34 634 153 HOH HOH . G 4 HOH A 35 635 154 HOH HOH . G 4 HOH A 36 636 155 HOH HOH . G 4 HOH A 37 637 156 HOH HOH . G 4 HOH A 38 638 157 HOH HOH . G 4 HOH A 39 639 158 HOH HOH . G 4 HOH A 40 640 159 HOH HOH . G 4 HOH A 41 641 160 HOH HOH . G 4 HOH A 42 642 161 HOH HOH . G 4 HOH A 43 643 162 HOH HOH . G 4 HOH A 44 644 163 HOH HOH . G 4 HOH A 45 645 164 HOH HOH . G 4 HOH A 46 646 165 HOH HOH . G 4 HOH A 47 647 166 HOH HOH . G 4 HOH A 48 648 167 HOH HOH . G 4 HOH A 49 649 168 HOH HOH . G 4 HOH A 50 650 169 HOH HOH . G 4 HOH A 51 651 170 HOH HOH . G 4 HOH A 52 652 171 HOH HOH . G 4 HOH A 53 653 172 HOH HOH . G 4 HOH A 54 654 173 HOH HOH . G 4 HOH A 55 655 174 HOH HOH . G 4 HOH A 56 656 175 HOH HOH . G 4 HOH A 57 657 176 HOH HOH . G 4 HOH A 58 658 178 HOH HOH . G 4 HOH A 59 659 179 HOH HOH . G 4 HOH A 60 660 180 HOH HOH . G 4 HOH A 61 661 181 HOH HOH . G 4 HOH A 62 662 182 HOH HOH . G 4 HOH A 63 663 183 HOH HOH . G 4 HOH A 64 664 184 HOH HOH . G 4 HOH A 65 665 185 HOH HOH . G 4 HOH A 66 666 186 HOH HOH . G 4 HOH A 67 667 187 HOH HOH . G 4 HOH A 68 668 188 HOH HOH . G 4 HOH A 69 669 189 HOH HOH . G 4 HOH A 70 670 190 HOH HOH . G 4 HOH A 71 671 191 HOH HOH . G 4 HOH A 72 672 192 HOH HOH . G 4 HOH A 73 673 193 HOH HOH . G 4 HOH A 74 674 194 HOH HOH . G 4 HOH A 75 675 195 HOH HOH . G 4 HOH A 76 676 196 HOH HOH . G 4 HOH A 77 677 197 HOH HOH . G 4 HOH A 78 678 198 HOH HOH . G 4 HOH A 79 679 199 HOH HOH . G 4 HOH A 80 680 200 HOH HOH . G 4 HOH A 81 681 201 HOH HOH . G 4 HOH A 82 682 202 HOH HOH . G 4 HOH A 83 683 203 HOH HOH . G 4 HOH A 84 684 204 HOH HOH . G 4 HOH A 85 685 205 HOH HOH . G 4 HOH A 86 686 206 HOH HOH . G 4 HOH A 87 687 207 HOH HOH . G 4 HOH A 88 688 208 HOH HOH . G 4 HOH A 89 689 209 HOH HOH . G 4 HOH A 90 690 210 HOH HOH . G 4 HOH A 91 691 211 HOH HOH . G 4 HOH A 92 692 212 HOH HOH . G 4 HOH A 93 693 213 HOH HOH . G 4 HOH A 94 694 214 HOH HOH . G 4 HOH A 95 695 215 HOH HOH . G 4 HOH A 96 696 216 HOH HOH . G 4 HOH A 97 697 217 HOH HOH . G 4 HOH A 98 698 218 HOH HOH . G 4 HOH A 99 699 219 HOH HOH . G 4 HOH A 100 700 220 HOH HOH . G 4 HOH A 101 701 221 HOH HOH . G 4 HOH A 102 702 222 HOH HOH . G 4 HOH A 103 703 223 HOH HOH . G 4 HOH A 104 704 224 HOH HOH . G 4 HOH A 105 705 225 HOH HOH . G 4 HOH A 106 706 226 HOH HOH . G 4 HOH A 107 707 227 HOH HOH . G 4 HOH A 108 708 228 HOH HOH . G 4 HOH A 109 709 229 HOH HOH . G 4 HOH A 110 710 230 HOH HOH . G 4 HOH A 111 711 231 HOH HOH . G 4 HOH A 112 712 232 HOH HOH . G 4 HOH A 113 713 233 HOH HOH . G 4 HOH A 114 714 234 HOH HOH . G 4 HOH A 115 715 235 HOH HOH . G 4 HOH A 116 716 236 HOH HOH . G 4 HOH A 117 717 237 HOH HOH . G 4 HOH A 118 718 238 HOH HOH . G 4 HOH A 119 719 239 HOH HOH . G 4 HOH A 120 720 240 HOH HOH . G 4 HOH A 121 721 241 HOH HOH . G 4 HOH A 122 722 242 HOH HOH . G 4 HOH A 123 723 243 HOH HOH . G 4 HOH A 124 724 244 HOH HOH . G 4 HOH A 125 725 245 HOH HOH . G 4 HOH A 126 726 246 HOH HOH . G 4 HOH A 127 727 247 HOH HOH . G 4 HOH A 128 728 248 HOH HOH . G 4 HOH A 129 729 249 HOH HOH . G 4 HOH A 130 730 250 HOH HOH . G 4 HOH A 131 731 251 HOH HOH . G 4 HOH A 132 732 252 HOH HOH . G 4 HOH A 133 733 253 HOH HOH . G 4 HOH A 134 734 254 HOH HOH . G 4 HOH A 135 735 255 HOH HOH . G 4 HOH A 136 736 256 HOH HOH . G 4 HOH A 137 737 257 HOH HOH . G 4 HOH A 138 738 258 HOH HOH . G 4 HOH A 139 739 259 HOH HOH . G 4 HOH A 140 740 260 HOH HOH . G 4 HOH A 141 741 261 HOH HOH . G 4 HOH A 142 742 262 HOH HOH . G 4 HOH A 143 743 263 HOH HOH . G 4 HOH A 144 744 264 HOH HOH . G 4 HOH A 145 745 265 HOH HOH . G 4 HOH A 146 746 266 HOH HOH . G 4 HOH A 147 747 267 HOH HOH . G 4 HOH A 148 748 268 HOH HOH . G 4 HOH A 149 749 269 HOH HOH . G 4 HOH A 150 750 270 HOH HOH . G 4 HOH A 151 751 271 HOH HOH . G 4 HOH A 152 752 272 HOH HOH . G 4 HOH A 153 753 273 HOH HOH . G 4 HOH A 154 754 274 HOH HOH . G 4 HOH A 155 755 275 HOH HOH . G 4 HOH A 156 756 276 HOH HOH . G 4 HOH A 157 757 277 HOH HOH . G 4 HOH A 158 758 278 HOH HOH . G 4 HOH A 159 759 279 HOH HOH . G 4 HOH A 160 760 280 HOH HOH . G 4 HOH A 161 761 281 HOH HOH . G 4 HOH A 162 762 282 HOH HOH . G 4 HOH A 163 763 283 HOH HOH . G 4 HOH A 164 764 284 HOH HOH . G 4 HOH A 165 765 285 HOH HOH . G 4 HOH A 166 766 286 HOH HOH . G 4 HOH A 167 767 287 HOH HOH . G 4 HOH A 168 768 289 HOH HOH . G 4 HOH A 169 769 290 HOH HOH . G 4 HOH A 170 770 291 HOH HOH . G 4 HOH A 171 771 292 HOH HOH . G 4 HOH A 172 772 293 HOH HOH . G 4 HOH A 173 773 298 HOH HOH . G 4 HOH A 174 774 299 HOH HOH . G 4 HOH A 175 775 300 HOH HOH . G 4 HOH A 176 776 301 HOH HOH . G 4 HOH A 177 777 302 HOH HOH . G 4 HOH A 178 778 303 HOH HOH . G 4 HOH A 179 779 304 HOH HOH . H 4 HOH B 1 602 1 HOH HOH . H 4 HOH B 2 603 2 HOH HOH . H 4 HOH B 3 604 3 HOH HOH . H 4 HOH B 4 605 4 HOH HOH . H 4 HOH B 5 606 5 HOH HOH . H 4 HOH B 6 607 6 HOH HOH . H 4 HOH B 7 608 7 HOH HOH . H 4 HOH B 8 609 8 HOH HOH . H 4 HOH B 9 610 9 HOH HOH . H 4 HOH B 10 611 10 HOH HOH . H 4 HOH B 11 612 11 HOH HOH . H 4 HOH B 12 613 12 HOH HOH . H 4 HOH B 13 614 13 HOH HOH . H 4 HOH B 14 615 14 HOH HOH . H 4 HOH B 15 616 15 HOH HOH . H 4 HOH B 16 617 16 HOH HOH . H 4 HOH B 17 618 17 HOH HOH . H 4 HOH B 18 619 18 HOH HOH . H 4 HOH B 19 620 19 HOH HOH . H 4 HOH B 20 621 20 HOH HOH . H 4 HOH B 21 622 21 HOH HOH . H 4 HOH B 22 623 22 HOH HOH . H 4 HOH B 23 624 23 HOH HOH . H 4 HOH B 24 625 24 HOH HOH . H 4 HOH B 25 626 25 HOH HOH . H 4 HOH B 26 627 26 HOH HOH . H 4 HOH B 27 628 27 HOH HOH . H 4 HOH B 28 629 28 HOH HOH . H 4 HOH B 29 630 29 HOH HOH . H 4 HOH B 30 631 30 HOH HOH . H 4 HOH B 31 632 31 HOH HOH . H 4 HOH B 32 633 33 HOH HOH . H 4 HOH B 33 634 34 HOH HOH . H 4 HOH B 34 635 35 HOH HOH . H 4 HOH B 35 636 36 HOH HOH . H 4 HOH B 36 637 37 HOH HOH . H 4 HOH B 37 638 38 HOH HOH . H 4 HOH B 38 639 39 HOH HOH . H 4 HOH B 39 640 40 HOH HOH . H 4 HOH B 40 641 41 HOH HOH . H 4 HOH B 41 642 42 HOH HOH . H 4 HOH B 42 643 43 HOH HOH . H 4 HOH B 43 644 44 HOH HOH . H 4 HOH B 44 645 45 HOH HOH . H 4 HOH B 45 646 46 HOH HOH . H 4 HOH B 46 647 47 HOH HOH . H 4 HOH B 47 648 48 HOH HOH . H 4 HOH B 48 649 49 HOH HOH . H 4 HOH B 49 650 50 HOH HOH . H 4 HOH B 50 651 51 HOH HOH . H 4 HOH B 51 652 52 HOH HOH . H 4 HOH B 52 653 53 HOH HOH . H 4 HOH B 53 654 54 HOH HOH . H 4 HOH B 54 655 55 HOH HOH . H 4 HOH B 55 656 56 HOH HOH . H 4 HOH B 56 657 57 HOH HOH . H 4 HOH B 57 658 58 HOH HOH . H 4 HOH B 58 659 59 HOH HOH . H 4 HOH B 59 660 60 HOH HOH . H 4 HOH B 60 661 61 HOH HOH . H 4 HOH B 61 662 62 HOH HOH . H 4 HOH B 62 663 63 HOH HOH . H 4 HOH B 63 664 64 HOH HOH . H 4 HOH B 64 665 65 HOH HOH . H 4 HOH B 65 666 66 HOH HOH . H 4 HOH B 66 667 67 HOH HOH . H 4 HOH B 67 668 68 HOH HOH . H 4 HOH B 68 669 69 HOH HOH . H 4 HOH B 69 670 70 HOH HOH . H 4 HOH B 70 671 71 HOH HOH . H 4 HOH B 71 672 72 HOH HOH . H 4 HOH B 72 673 73 HOH HOH . H 4 HOH B 73 674 74 HOH HOH . H 4 HOH B 74 675 75 HOH HOH . H 4 HOH B 75 676 76 HOH HOH . H 4 HOH B 76 677 77 HOH HOH . H 4 HOH B 77 678 78 HOH HOH . H 4 HOH B 78 679 79 HOH HOH . H 4 HOH B 79 680 80 HOH HOH . H 4 HOH B 80 681 81 HOH HOH . H 4 HOH B 81 682 82 HOH HOH . H 4 HOH B 82 683 83 HOH HOH . H 4 HOH B 83 684 84 HOH HOH . H 4 HOH B 84 685 85 HOH HOH . H 4 HOH B 85 686 86 HOH HOH . H 4 HOH B 86 687 87 HOH HOH . H 4 HOH B 87 688 89 HOH HOH . H 4 HOH B 88 689 90 HOH HOH . H 4 HOH B 89 690 91 HOH HOH . H 4 HOH B 90 691 92 HOH HOH . H 4 HOH B 91 692 93 HOH HOH . H 4 HOH B 92 693 94 HOH HOH . H 4 HOH B 93 694 95 HOH HOH . H 4 HOH B 94 695 96 HOH HOH . H 4 HOH B 95 696 97 HOH HOH . H 4 HOH B 96 697 98 HOH HOH . H 4 HOH B 97 698 99 HOH HOH . H 4 HOH B 98 699 100 HOH HOH . H 4 HOH B 99 700 101 HOH HOH . H 4 HOH B 100 701 102 HOH HOH . H 4 HOH B 101 702 104 HOH HOH . H 4 HOH B 102 703 105 HOH HOH . H 4 HOH B 103 704 106 HOH HOH . H 4 HOH B 104 705 107 HOH HOH . H 4 HOH B 105 706 108 HOH HOH . H 4 HOH B 106 707 109 HOH HOH . H 4 HOH B 107 708 110 HOH HOH . H 4 HOH B 108 709 111 HOH HOH . H 4 HOH B 109 710 112 HOH HOH . H 4 HOH B 110 711 113 HOH HOH . H 4 HOH B 111 712 114 HOH HOH . H 4 HOH B 112 713 115 HOH HOH . H 4 HOH B 113 714 116 HOH HOH . H 4 HOH B 114 715 117 HOH HOH . H 4 HOH B 115 716 118 HOH HOH . H 4 HOH B 116 717 119 HOH HOH . H 4 HOH B 117 718 120 HOH HOH . H 4 HOH B 118 719 121 HOH HOH . H 4 HOH B 119 720 128 HOH HOH . H 4 HOH B 120 721 288 HOH HOH . H 4 HOH B 121 722 294 HOH HOH . H 4 HOH B 122 723 295 HOH HOH . H 4 HOH B 123 724 296 HOH HOH . H 4 HOH B 124 725 297 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSM . . . D 3 44.436 -31.907 -7.592 1 50.66 ? N HSM 600 A 1 HETATM 2 C CA HSM . . . D 3 43.502 -32.066 -6.497 1 52.52 ? CA HSM 600 A 1 HETATM 3 C CB HSM . . . D 3 44.12 -32.674 -5.254 1 56.1 ? CB HSM 600 A 1 HETATM 4 C CG HSM . . . D 3 43.128 -33.473 -4.496 1 58.68 ? CG HSM 600 A 1 HETATM 5 N ND1 HSM . . . D 3 42.744 -34.723 -4.919 1 58.87 ? ND1 HSM 600 A 1 HETATM 6 C CD2 HSM . . . D 3 42.445 -33.215 -3.353 1 60.78 ? CD2 HSM 600 A 1 HETATM 7 C CE1 HSM . . . D 3 41.862 -35.203 -4.053 1 60.8 ? CE1 HSM 600 A 1 HETATM 8 N NE2 HSM . . . D 3 41.667 -34.306 -3.095 1 58.84 ? NE2 HSM 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #