data_1JQW # _model_server_result.job_id oVru9VaSB32O0VSf0dRAZw _model_server_result.datetime_utc '2024-10-14 06:19:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 1JQW # _exptl.entry_id 1JQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.185 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JQW _cell.length_a 61.202 _cell.length_b 61.202 _cell.length_c 150.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -30.601 53.002487 -25.005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 22 A CYS 22 1_555 D SD HCS . A HCS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale2 A SG CYS 41 A CYS 41 1_555 E SD HCS . A HCS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale3 A C GLY 83 A GLY 83 1_555 A N OCS 84 A OCS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C OCS 84 A OCS 84 1_555 A N GLN 85 A GLN 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A NE2 HIS 54 A HIS 54 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A NE2 HIS 58 A HIS 58 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A SG CYS 126 A CYS 126 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C4 H9 N O2 S' _chem_comp.formula_weight 135.185 _chem_comp.id HCS _chem_comp.mon_nstd_flag . _chem_comp.name '2-AMINO-4-MERCAPTO-BUTYRIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-Homocysteine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HCS sing 129 n n N H HCS sing 130 n n N H2 HCS sing 131 n n CA CB HCS sing 132 n n CA C HCS sing 133 n n CA HA HCS sing 134 n n CB CG HCS sing 135 n n CB HB2 HCS sing 136 n n CB HB3 HCS sing 137 n n CG SD HCS sing 138 n n CG HG2 HCS sing 139 n n CG HG3 HCS sing 140 n n SD HD HCS sing 141 n n C OXT HCS sing 142 n n C O HCS doub 143 n n OXT HXT HCS sing 144 n n # _atom_sites.entry_id 1JQW _atom_sites.fract_transf_matrix[1][1] 0.016339 _atom_sites.fract_transf_matrix[1][2] 0.009434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 300 300 ZN ZN . C 3 HCS A 1 401 401 HCS HCS . D 3 HCS A 1 402 22 HCS CHM . E 3 HCS A 1 403 41 HCS CHM . F 4 HOH A 1 404 1 HOH WAT . F 4 HOH A 2 405 2 HOH WAT . F 4 HOH A 3 406 3 HOH WAT . F 4 HOH A 4 407 4 HOH WAT . F 4 HOH A 5 408 5 HOH WAT . F 4 HOH A 6 409 6 HOH WAT . F 4 HOH A 7 410 7 HOH WAT . F 4 HOH A 8 411 8 HOH WAT . F 4 HOH A 9 412 9 HOH WAT . F 4 HOH A 10 413 10 HOH WAT . F 4 HOH A 11 414 11 HOH WAT . F 4 HOH A 12 415 15 HOH WAT . F 4 HOH A 13 416 16 HOH WAT . F 4 HOH A 14 417 20 HOH WAT . F 4 HOH A 15 418 21 HOH WAT . F 4 HOH A 16 419 22 HOH WAT . F 4 HOH A 17 420 23 HOH WAT . F 4 HOH A 18 421 24 HOH WAT . F 4 HOH A 19 422 25 HOH WAT . F 4 HOH A 20 423 26 HOH WAT . F 4 HOH A 21 424 27 HOH WAT . F 4 HOH A 22 425 28 HOH WAT . F 4 HOH A 23 426 30 HOH WAT . F 4 HOH A 24 427 31 HOH WAT . F 4 HOH A 25 428 32 HOH WAT . F 4 HOH A 26 429 33 HOH WAT . F 4 HOH A 27 430 34 HOH WAT . F 4 HOH A 28 431 35 HOH WAT . F 4 HOH A 29 432 37 HOH WAT . F 4 HOH A 30 433 38 HOH WAT . F 4 HOH A 31 434 39 HOH WAT . F 4 HOH A 32 435 40 HOH WAT . F 4 HOH A 33 436 41 HOH WAT . F 4 HOH A 34 437 42 HOH WAT . F 4 HOH A 35 438 43 HOH WAT . F 4 HOH A 36 439 44 HOH WAT . F 4 HOH A 37 440 45 HOH WAT . F 4 HOH A 38 441 46 HOH WAT . F 4 HOH A 39 442 47 HOH WAT . F 4 HOH A 40 443 48 HOH WAT . F 4 HOH A 41 444 49 HOH WAT . F 4 HOH A 42 445 50 HOH WAT . F 4 HOH A 43 446 52 HOH WAT . F 4 HOH A 44 447 53 HOH WAT . F 4 HOH A 45 448 54 HOH WAT . F 4 HOH A 46 449 60 HOH WAT . F 4 HOH A 47 450 56 HOH WAT . F 4 HOH A 48 451 57 HOH WAT . F 4 HOH A 49 452 58 HOH WAT . F 4 HOH A 50 453 59 HOH WAT . F 4 HOH A 51 454 61 HOH WAT . F 4 HOH A 52 455 62 HOH WAT . F 4 HOH A 53 456 63 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HCS . . . D 3 -8.072 20.442 -6.212 1 91.56 ? N HCS 402 A 1 HETATM 2 C CA HCS . . . D 3 -8.89 19.716 -5.24 1 91.5 ? CA HCS 402 A 1 HETATM 3 C CB HCS . . . D 3 -9.505 20.699 -4.257 1 76.25 ? CB HCS 402 A 1 HETATM 4 C CG HCS . . . D 3 -10.289 21.788 -4.941 1 64.05 ? CG HCS 402 A 1 HETATM 5 S SD HCS . . . D 3 -9.667 23.442 -4.507 1 53.58 ? SD HCS 402 A 1 HETATM 6 C C HCS . . . D 3 -10.004 18.898 -5.897 1 98.66 ? C HCS 402 A 1 HETATM 7 O OXT HCS . . . D 3 -11.045 19.495 -6.26 1 88.23 ? OXT HCS 402 A 1 HETATM 8 O O HCS . . . D 3 -9.821 17.666 -6.033 1 100.48 ? O HCS 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #