data_1JR4 # _model_server_result.job_id -xNUzJkSVFYO6mSaWMrlnw _model_server_result.datetime_utc '2025-03-01 04:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1JR4 # _exptl.entry_id 1JR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.396 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[5-(6-AMINO-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YL]-ALLYL}-2,3-DIHYDROXY-5-NITRO-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JR4 _cell.length_a 50.6 _cell.length_b 50.6 _cell.length_c 167.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc2 A OD2 ASP 141 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc3 A OD2 ASP 169 A ASP 169 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc4 A OD1 ASN 170 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 B MG MG . A MG 300 1_555 C O28 CL4 . A CL4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 B MG MG . A MG 300 1_555 C O29 CL4 . A CL4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 B MG MG . A MG 300 1_555 D O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C19 H19 N7 O8' _chem_comp.formula_weight 473.396 _chem_comp.id CL4 _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[5-(6-AMINO-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YL]-ALLYL}-2,3-DIHYDROXY-5-NITRO-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CL4 sing 70 n n C1 C4 CL4 doub 71 e n C1 HC1 CL4 sing 72 n n C2 N3 CL4 sing 73 n n C2 HC21 CL4 sing 74 n n C2 HC22 CL4 sing 75 n n N3 C30 CL4 sing 76 n n N3 HN3 CL4 sing 77 n n C4 C5 CL4 sing 78 n n C4 HC4 CL4 sing 79 n n C5 O6 CL4 sing 80 n n C5 C7 CL4 sing 81 n n C5 HC5 CL4 sing 82 n n O6 C11 CL4 sing 83 n n C7 O8 CL4 sing 84 n n C7 C9 CL4 sing 85 n n C7 HC7 CL4 sing 86 n n O8 HO8 CL4 sing 87 n n C9 O10 CL4 sing 88 n n C9 C11 CL4 sing 89 n n C9 HC9 CL4 sing 90 n n O10 H10 CL4 sing 91 n n C11 N12 CL4 sing 92 n n C11 H11 CL4 sing 93 n n N12 C13 CL4 sing 94 n y N12 C21 CL4 sing 95 n y C13 N14 CL4 doub 96 n y C13 H13 CL4 sing 97 n n N14 C15 CL4 sing 98 n y C15 C16 CL4 doub 99 n y C15 C21 CL4 sing 100 n y C16 N17 CL4 sing 101 n n C16 N18 CL4 sing 102 n y N17 H171 CL4 sing 103 n n N17 H172 CL4 sing 104 n n N18 C19 CL4 doub 105 n y C19 N20 CL4 sing 106 n y C19 H19 CL4 sing 107 n n N20 C21 CL4 doub 108 n y C22 C23 CL4 doub 109 n y C22 C27 CL4 sing 110 n y C22 O29 CL4 sing 111 n n C23 C24 CL4 sing 112 n y C23 O28 CL4 sing 113 n n C24 C25 CL4 doub 114 n y C24 H24 CL4 sing 115 n n C25 C26 CL4 sing 116 n y C25 N32 CL4 sing 117 n n C26 C27 CL4 doub 118 n y C26 H26 CL4 sing 119 n n C27 C30 CL4 sing 120 n n O28 H28 CL4 sing 121 n n O29 H29 CL4 sing 122 n n C30 O31 CL4 doub 123 n n N32 O33 CL4 doub 124 n n N32 O34 CL4 sing 125 n n # _atom_sites.entry_id 1JR4 _atom_sites.fract_transf_matrix[1][1] 0.019776 _atom_sites.fract_transf_matrix[1][2] 0.011418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 300 1 MG MG . C 3 CL4 A 1 301 1 CL4 CL4 . D 4 HOH A 1 302 2 HOH HOH . D 4 HOH A 2 303 3 HOH HOH . D 4 HOH A 3 304 4 HOH HOH . D 4 HOH A 4 305 5 HOH HOH . D 4 HOH A 5 306 6 HOH HOH . D 4 HOH A 6 307 7 HOH HOH . D 4 HOH A 7 308 8 HOH HOH . D 4 HOH A 8 309 9 HOH HOH . D 4 HOH A 9 310 10 HOH HOH . D 4 HOH A 10 311 11 HOH HOH . D 4 HOH A 11 312 12 HOH HOH . D 4 HOH A 12 313 13 HOH HOH . D 4 HOH A 13 314 14 HOH HOH . D 4 HOH A 14 315 15 HOH HOH . D 4 HOH A 15 316 16 HOH HOH . D 4 HOH A 16 317 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CL4 . . . C 3 40.457 11.103 17.94 1 36.32 ? C1 CL4 301 A 1 HETATM 2 C C2 CL4 . . . C 3 40.813 10.926 19.377 1 32.18 ? C2 CL4 301 A 1 HETATM 3 N N3 CL4 . . . C 3 39.632 10.573 20.128 1 33.9 ? N3 CL4 301 A 1 HETATM 4 C C4 CL4 . . . C 3 41.307 11.699 17.115 1 34.19 ? C4 CL4 301 A 1 HETATM 5 C C5 CL4 . . . C 3 40.962 11.903 15.708 1 33.72 ? C5 CL4 301 A 1 HETATM 6 O O6 CL4 . . . C 3 41.379 13.252 15.357 1 36.42 ? O6 CL4 301 A 1 HETATM 7 C C7 CL4 . . . C 3 41.776 10.964 14.847 1 33.51 ? C7 CL4 301 A 1 HETATM 8 O O8 CL4 . . . C 3 41.101 10.737 13.605 1 35.07 ? O8 CL4 301 A 1 HETATM 9 C C9 CL4 . . . C 3 43.059 11.753 14.621 1 34.11 ? C9 CL4 301 A 1 HETATM 10 O O10 CL4 . . . C 3 43.601 11.371 13.366 1 34.3 ? O10 CL4 301 A 1 HETATM 11 C C11 CL4 . . . C 3 42.583 13.232 14.561 1 30.54 ? C11 CL4 301 A 1 HETATM 12 N N12 CL4 . . . C 3 43.593 14.149 15.151 1 27.7 ? N12 CL4 301 A 1 HETATM 13 C C13 CL4 . . . C 3 44.29 13.868 16.336 1 28.39 ? C13 CL4 301 A 1 HETATM 14 N N14 CL4 . . . C 3 45.105 14.848 16.696 1 25.08 ? N14 CL4 301 A 1 HETATM 15 C C15 CL4 . . . C 3 44.95 15.806 15.745 1 25.35 ? C15 CL4 301 A 1 HETATM 16 C C16 CL4 . . . C 3 45.551 17.095 15.578 1 27.55 ? C16 CL4 301 A 1 HETATM 17 N N17 CL4 . . . C 3 46.507 17.557 16.437 1 24.91 ? N17 CL4 301 A 1 HETATM 18 N N18 CL4 . . . C 3 45.172 17.862 14.527 1 30.31 ? N18 CL4 301 A 1 HETATM 19 C C19 CL4 . . . C 3 44.251 17.381 13.645 1 26.09 ? C19 CL4 301 A 1 HETATM 20 N N20 CL4 . . . C 3 43.679 16.178 13.715 1 27.12 ? N20 CL4 301 A 1 HETATM 21 C C21 CL4 . . . C 3 44.023 15.416 14.776 1 26.17 ? C21 CL4 301 A 1 HETATM 22 C C22 CL4 . . . C 3 37.145 9.913 21.322 1 36.68 ? C22 CL4 301 A 1 HETATM 23 C C23 CL4 . . . C 3 35.913 9.5 21.864 1 34.86 ? C23 CL4 301 A 1 HETATM 24 C C24 CL4 . . . C 3 35.839 8.352 22.651 1 34.14 ? C24 CL4 301 A 1 HETATM 25 C C25 CL4 . . . C 3 37.023 7.631 22.89 1 39.55 ? C25 CL4 301 A 1 HETATM 26 C C26 CL4 . . . C 3 38.263 8.029 22.389 1 36.41 ? C26 CL4 301 A 1 HETATM 27 C C27 CL4 . . . C 3 38.333 9.182 21.593 1 36.75 ? C27 CL4 301 A 1 HETATM 28 O O28 CL4 . . . C 3 34.825 10.265 21.598 1 34.81 ? O28 CL4 301 A 1 HETATM 29 O O29 CL4 . . . C 3 37.139 11.033 20.548 1 38.43 ? O29 CL4 301 A 1 HETATM 30 C C30 CL4 . . . C 3 39.622 9.587 21.046 1 32.63 ? C30 CL4 301 A 1 HETATM 31 O O31 CL4 . . . C 3 40.682 9.102 21.415 1 33.93 ? O31 CL4 301 A 1 HETATM 32 N N32 CL4 . . . C 3 36.941 6.408 23.689 1 42.67 ? N32 CL4 301 A 1 HETATM 33 O O33 CL4 . . . C 3 35.818 5.94 23.923 1 43.52 ? O33 CL4 301 A 1 HETATM 34 O O34 CL4 . . . C 3 37.966 5.892 24.17 1 41.8 ? O34 CL4 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 34 #