data_1JRI
#
_model_server_result.job_id            toBZGBvPddteOoifFEXw3w 
_model_server_result.datetime_utc      '2024-11-22 20:43:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jri 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":107}' 
#
_entry.id    1JRI 
#
_exptl.entry_id    1JRI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JRI 
_cell.length_a            40.371 
_cell.length_b            114.698 
_cell.length_c            238.6 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JRI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA heptameric 7 author_and_software_defined_assembly 1 
PISA heptameric 7 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,O,P,Q,R,S,T,U,EA,FA,GA,HA,IA,JA,KA 1 1 
H,I,J,K,L,M,N,V,W,X,Y,Z,AA,BA,CA,DA,LA,MA,NA,OA,PA,QA,RA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     1JRI 
_atom_sites.fract_transf_matrix[1][1]    0.02477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004191 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 2 CL B 1 202 2 CL CL . 
P 3 EDO C 1 101 1 EDO EDO . 
Q 3 EDO D 1 107 7 EDO EDO . 
R 3 EDO E 1 103 3 EDO EDO . 
S 3 EDO F 1 109 9 EDO EDO . 
T 2 CL G 1 203 3 CL CL . 
U 3 EDO G 1 104 4 EDO EDO . 
V 3 EDO H 1 111 11 EDO EDO . 
W 3 EDO H 1 112 12 EDO EDO . 
X 3 EDO I 1 113 13 EDO EDO . 
Y 2 CL L 1 201 1 CL CL . 
Z 3 EDO L 1 102 2 EDO EDO . 
AA 3 EDO M 1 108 8 EDO EDO . 
BA 3 EDO N 1 105 5 EDO EDO . 
CA 3 EDO N 1 106 6 EDO EDO . 
DA 3 EDO N 1 110 10 EDO EDO . 
EA 4 HOH A 1 86 67 HOH WAT . 
EA 4 HOH A 2 87 76 HOH WAT . 
EA 4 HOH A 3 88 86 HOH WAT . 
FA 4 HOH B 1 203 5 HOH WAT . 
FA 4 HOH B 2 204 36 HOH WAT . 
FA 4 HOH B 3 205 48 HOH WAT . 
FA 4 HOH B 4 206 49 HOH WAT . 
FA 4 HOH B 5 207 59 HOH WAT . 
FA 4 HOH B 6 208 74 HOH WAT . 
GA 4 HOH C 1 102 12 HOH WAT . 
GA 4 HOH C 2 103 19 HOH WAT . 
GA 4 HOH C 3 104 30 HOH WAT . 
GA 4 HOH C 4 105 39 HOH WAT . 
GA 4 HOH C 5 106 41 HOH WAT . 
GA 4 HOH C 6 107 55 HOH WAT . 
GA 4 HOH C 7 108 73 HOH WAT . 
GA 4 HOH C 8 109 75 HOH WAT . 
GA 4 HOH C 9 110 85 HOH WAT . 
HA 4 HOH D 1 108 11 HOH WAT . 
HA 4 HOH D 2 109 27 HOH WAT . 
HA 4 HOH D 3 110 37 HOH WAT . 
HA 4 HOH D 4 111 40 HOH WAT . 
HA 4 HOH D 5 112 70 HOH WAT . 
HA 4 HOH D 6 113 71 HOH WAT . 
IA 4 HOH E 1 104 7 HOH WAT . 
IA 4 HOH E 2 105 8 HOH WAT . 
IA 4 HOH E 3 106 14 HOH WAT . 
IA 4 HOH E 4 107 15 HOH WAT . 
IA 4 HOH E 5 108 51 HOH WAT . 
IA 4 HOH E 6 109 52 HOH WAT . 
IA 4 HOH E 7 110 69 HOH WAT . 
IA 4 HOH E 8 111 82 HOH WAT . 
IA 4 HOH E 9 112 84 HOH WAT . 
JA 4 HOH F 1 110 3 HOH WAT . 
JA 4 HOH F 2 111 22 HOH WAT . 
JA 4 HOH F 3 112 31 HOH WAT . 
JA 4 HOH F 4 113 34 HOH WAT . 
JA 4 HOH F 5 114 62 HOH WAT . 
JA 4 HOH F 6 115 65 HOH WAT . 
JA 4 HOH F 7 116 77 HOH WAT . 
KA 4 HOH G 1 204 16 HOH WAT . 
KA 4 HOH G 2 205 43 HOH WAT . 
KA 4 HOH G 3 206 56 HOH WAT . 
KA 4 HOH G 4 207 66 HOH WAT . 
LA 4 HOH H 1 113 25 HOH WAT . 
LA 4 HOH H 2 114 35 HOH WAT . 
LA 4 HOH H 3 115 60 HOH WAT . 
MA 4 HOH I 1 114 47 HOH WAT . 
MA 4 HOH I 2 115 57 HOH WAT . 
MA 4 HOH I 3 116 83 HOH WAT . 
NA 4 HOH J 1 86 20 HOH WAT . 
NA 4 HOH J 2 87 32 HOH WAT . 
OA 4 HOH K 1 86 4 HOH WAT . 
OA 4 HOH K 2 87 10 HOH WAT . 
PA 4 HOH L 1 202 18 HOH WAT . 
PA 4 HOH L 2 203 21 HOH WAT . 
PA 4 HOH L 3 204 23 HOH WAT . 
PA 4 HOH L 4 205 24 HOH WAT . 
PA 4 HOH L 5 206 28 HOH WAT . 
PA 4 HOH L 6 207 38 HOH WAT . 
PA 4 HOH L 7 208 42 HOH WAT . 
PA 4 HOH L 8 209 46 HOH WAT . 
PA 4 HOH L 9 210 53 HOH WAT . 
PA 4 HOH L 10 211 63 HOH WAT . 
PA 4 HOH L 11 212 68 HOH WAT . 
PA 4 HOH L 12 213 78 HOH WAT . 
PA 4 HOH L 13 214 81 HOH WAT . 
QA 4 HOH M 1 109 2 HOH WAT . 
QA 4 HOH M 2 110 6 HOH WAT . 
QA 4 HOH M 3 111 9 HOH WAT . 
QA 4 HOH M 4 112 13 HOH WAT . 
QA 4 HOH M 5 113 33 HOH WAT . 
QA 4 HOH M 6 114 45 HOH WAT . 
QA 4 HOH M 7 115 54 HOH WAT . 
QA 4 HOH M 8 116 61 HOH WAT . 
QA 4 HOH M 9 117 64 HOH WAT . 
QA 4 HOH M 10 118 79 HOH WAT . 
RA 4 HOH N 1 111 1 HOH WAT . 
RA 4 HOH N 2 112 17 HOH WAT . 
RA 4 HOH N 3 113 26 HOH WAT . 
RA 4 HOH N 4 114 29 HOH WAT . 
RA 4 HOH N 5 115 44 HOH WAT . 
RA 4 HOH N 6 116 50 HOH WAT . 
RA 4 HOH N 7 117 58 HOH WAT . 
RA 4 HOH N 8 118 72 HOH WAT . 
RA 4 HOH N 9 119 80 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Q 3 56.087 23.606 91.526 1 77.04 ? C1 EDO 107 D 1 
HETATM 2 O O1 EDO . . . Q 3 56.027 24.796 90.907 1 72.54 ? O1 EDO 107 D 1 
HETATM 3 C C2 EDO . . . Q 3 55.294 23.635 92.839 1 71.93 ? C2 EDO 107 D 1 
HETATM 4 O O2 EDO . . . Q 3 53.855 23.207 92.478 1 74.71 ? O2 EDO 107 D 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#