data_1JRK
#
_model_server_result.job_id            hi8V0Au_teRSPA-a7Gcu7Q 
_model_server_result.datetime_utc      '2025-03-05 20:13:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jrk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":206}' 
#
_entry.id    1JRK 
#
_exptl.entry_id    1JRK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.96 
_cell.angle_gamma         90 
_cell.entry_id            1JRK 
_cell.length_a            52.469 
_cell.length_b            81.464 
_cell.length_c            73.888 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JRK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 205 n n 
C1 H11 MPD sing 206 n n 
C1 H12 MPD sing 207 n n 
C1 H13 MPD sing 208 n n 
C2 O2 MPD sing 209 n n 
C2 CM MPD sing 210 n n 
C2 C3 MPD sing 211 n n 
O2 HO2 MPD sing 212 n n 
CM HM1 MPD sing 213 n n 
CM HM2 MPD sing 214 n n 
CM HM3 MPD sing 215 n n 
C3 C4 MPD sing 216 n n 
C3 H31 MPD sing 217 n n 
C3 H32 MPD sing 218 n n 
C4 O4 MPD sing 219 n n 
C4 C5 MPD sing 220 n n 
C4 H4 MPD sing 221 n n 
O4 HO4 MPD sing 222 n n 
C5 H51 MPD sing 223 n n 
C5 H52 MPD sing 224 n n 
C5 H53 MPD sing 225 n n 
#
_atom_sites.entry_id                     1JRK 
_atom_sites.fract_transf_matrix[1][1]    0.019059 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003347 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MPD A 1 203 3 MPD MPD . 
F 2 MPD B 1 202 2 MPD MPD . 
G 2 MPD B 1 204 4 MPD MPD . 
H 2 MPD C 1 201 1 MPD MPD . 
I 2 MPD C 1 205 5 MPD MPD . 
J 2 MPD C 1 206 6 MPD MPD . 
K 3 HOH A 1 204 6 HOH HOH . 
K 3 HOH A 2 205 17 HOH HOH . 
K 3 HOH A 3 206 18 HOH HOH . 
K 3 HOH A 4 207 23 HOH HOH . 
K 3 HOH A 5 208 24 HOH HOH . 
K 3 HOH A 6 209 32 HOH HOH . 
K 3 HOH A 7 210 33 HOH HOH . 
K 3 HOH A 8 211 34 HOH HOH . 
K 3 HOH A 9 212 39 HOH HOH . 
K 3 HOH A 10 213 40 HOH HOH . 
K 3 HOH A 11 214 43 HOH HOH . 
K 3 HOH A 12 215 52 HOH HOH . 
K 3 HOH A 13 216 55 HOH HOH . 
K 3 HOH A 14 217 60 HOH HOH . 
K 3 HOH A 15 218 63 HOH HOH . 
K 3 HOH A 16 219 67 HOH HOH . 
K 3 HOH A 17 220 69 HOH HOH . 
K 3 HOH A 18 221 71 HOH HOH . 
K 3 HOH A 19 222 79 HOH HOH . 
K 3 HOH A 20 223 80 HOH HOH . 
K 3 HOH A 21 224 82 HOH HOH . 
K 3 HOH A 22 225 88 HOH HOH . 
K 3 HOH A 23 226 97 HOH HOH . 
K 3 HOH A 24 227 104 HOH HOH . 
K 3 HOH A 25 228 111 HOH HOH . 
K 3 HOH A 26 229 114 HOH HOH . 
K 3 HOH A 27 230 115 HOH HOH . 
K 3 HOH A 28 231 117 HOH HOH . 
K 3 HOH A 29 232 120 HOH HOH . 
K 3 HOH A 30 233 123 HOH HOH . 
K 3 HOH A 31 234 136 HOH HOH . 
K 3 HOH A 32 235 137 HOH HOH . 
K 3 HOH A 33 236 141 HOH HOH . 
K 3 HOH A 34 237 147 HOH HOH . 
K 3 HOH A 35 238 150 HOH HOH . 
K 3 HOH A 36 239 151 HOH HOH . 
K 3 HOH A 37 240 153 HOH HOH . 
K 3 HOH A 38 241 156 HOH HOH . 
K 3 HOH A 39 242 160 HOH HOH . 
K 3 HOH A 40 243 167 HOH HOH . 
K 3 HOH A 41 244 172 HOH HOH . 
K 3 HOH A 42 245 173 HOH HOH . 
L 3 HOH B 1 205 4 HOH HOH . 
L 3 HOH B 2 206 7 HOH HOH . 
L 3 HOH B 3 207 9 HOH HOH . 
L 3 HOH B 4 208 13 HOH HOH . 
L 3 HOH B 5 209 15 HOH HOH . 
L 3 HOH B 6 210 21 HOH HOH . 
L 3 HOH B 7 211 29 HOH HOH . 
L 3 HOH B 8 212 30 HOH HOH . 
L 3 HOH B 9 213 35 HOH HOH . 
L 3 HOH B 10 214 36 HOH HOH . 
L 3 HOH B 11 215 53 HOH HOH . 
L 3 HOH B 12 216 54 HOH HOH . 
L 3 HOH B 13 217 58 HOH HOH . 
L 3 HOH B 14 218 70 HOH HOH . 
L 3 HOH B 15 219 72 HOH HOH . 
L 3 HOH B 16 220 75 HOH HOH . 
L 3 HOH B 17 221 81 HOH HOH . 
L 3 HOH B 18 222 83 HOH HOH . 
L 3 HOH B 19 223 94 HOH HOH . 
L 3 HOH B 20 224 95 HOH HOH . 
L 3 HOH B 21 225 98 HOH HOH . 
L 3 HOH B 22 226 100 HOH HOH . 
L 3 HOH B 23 227 103 HOH HOH . 
L 3 HOH B 24 228 113 HOH HOH . 
L 3 HOH B 25 229 116 HOH HOH . 
L 3 HOH B 26 230 119 HOH HOH . 
L 3 HOH B 27 231 121 HOH HOH . 
L 3 HOH B 28 232 122 HOH HOH . 
L 3 HOH B 29 233 124 HOH HOH . 
L 3 HOH B 30 234 125 HOH HOH . 
L 3 HOH B 31 235 126 HOH HOH . 
L 3 HOH B 32 236 133 HOH HOH . 
L 3 HOH B 33 237 135 HOH HOH . 
L 3 HOH B 34 238 142 HOH HOH . 
L 3 HOH B 35 239 144 HOH HOH . 
L 3 HOH B 36 240 149 HOH HOH . 
L 3 HOH B 37 241 154 HOH HOH . 
L 3 HOH B 38 242 169 HOH HOH . 
L 3 HOH B 39 243 170 HOH HOH . 
M 3 HOH C 1 207 3 HOH HOH . 
M 3 HOH C 2 208 10 HOH HOH . 
M 3 HOH C 3 209 12 HOH HOH . 
M 3 HOH C 4 210 16 HOH HOH . 
M 3 HOH C 5 211 20 HOH HOH . 
M 3 HOH C 6 212 22 HOH HOH . 
M 3 HOH C 7 213 26 HOH HOH . 
M 3 HOH C 8 214 28 HOH HOH . 
M 3 HOH C 9 215 31 HOH HOH . 
M 3 HOH C 10 216 37 HOH HOH . 
M 3 HOH C 11 217 41 HOH HOH . 
M 3 HOH C 12 218 42 HOH HOH . 
M 3 HOH C 13 219 44 HOH HOH . 
M 3 HOH C 14 220 45 HOH HOH . 
M 3 HOH C 15 221 47 HOH HOH . 
M 3 HOH C 16 222 48 HOH HOH . 
M 3 HOH C 17 223 51 HOH HOH . 
M 3 HOH C 18 224 59 HOH HOH . 
M 3 HOH C 19 225 61 HOH HOH . 
M 3 HOH C 20 226 65 HOH HOH . 
M 3 HOH C 21 227 66 HOH HOH . 
M 3 HOH C 22 228 68 HOH HOH . 
M 3 HOH C 23 229 73 HOH HOH . 
M 3 HOH C 24 230 74 HOH HOH . 
M 3 HOH C 25 231 76 HOH HOH . 
M 3 HOH C 26 232 77 HOH HOH . 
M 3 HOH C 27 233 84 HOH HOH . 
M 3 HOH C 28 234 85 HOH HOH . 
M 3 HOH C 29 235 86 HOH HOH . 
M 3 HOH C 30 236 87 HOH HOH . 
M 3 HOH C 31 237 90 HOH HOH . 
M 3 HOH C 32 238 93 HOH HOH . 
M 3 HOH C 33 239 101 HOH HOH . 
M 3 HOH C 34 240 102 HOH HOH . 
M 3 HOH C 35 241 105 HOH HOH . 
M 3 HOH C 36 242 106 HOH HOH . 
M 3 HOH C 37 243 108 HOH HOH . 
M 3 HOH C 38 244 109 HOH HOH . 
M 3 HOH C 39 245 110 HOH HOH . 
M 3 HOH C 40 246 112 HOH HOH . 
M 3 HOH C 41 247 118 HOH HOH . 
M 3 HOH C 42 248 127 HOH HOH . 
M 3 HOH C 43 249 138 HOH HOH . 
M 3 HOH C 44 250 139 HOH HOH . 
M 3 HOH C 45 251 140 HOH HOH . 
M 3 HOH C 46 252 145 HOH HOH . 
M 3 HOH C 47 253 146 HOH HOH . 
M 3 HOH C 48 254 152 HOH HOH . 
M 3 HOH C 49 255 158 HOH HOH . 
M 3 HOH C 50 256 159 HOH HOH . 
M 3 HOH C 51 257 162 HOH HOH . 
M 3 HOH C 52 258 164 HOH HOH . 
M 3 HOH C 53 259 165 HOH HOH . 
M 3 HOH C 54 260 168 HOH HOH . 
N 3 HOH D 1 157 1 HOH HOH . 
N 3 HOH D 2 158 2 HOH HOH . 
N 3 HOH D 3 159 5 HOH HOH . 
N 3 HOH D 4 160 8 HOH HOH . 
N 3 HOH D 5 161 11 HOH HOH . 
N 3 HOH D 6 162 14 HOH HOH . 
N 3 HOH D 7 163 19 HOH HOH . 
N 3 HOH D 8 164 25 HOH HOH . 
N 3 HOH D 9 165 27 HOH HOH . 
N 3 HOH D 10 166 38 HOH HOH . 
N 3 HOH D 11 167 46 HOH HOH . 
N 3 HOH D 12 168 49 HOH HOH . 
N 3 HOH D 13 169 50 HOH HOH . 
N 3 HOH D 14 170 56 HOH HOH . 
N 3 HOH D 15 171 57 HOH HOH . 
N 3 HOH D 16 172 62 HOH HOH . 
N 3 HOH D 17 173 64 HOH HOH . 
N 3 HOH D 18 174 78 HOH HOH . 
N 3 HOH D 19 175 89 HOH HOH . 
N 3 HOH D 20 176 91 HOH HOH . 
N 3 HOH D 21 177 92 HOH HOH . 
N 3 HOH D 22 178 96 HOH HOH . 
N 3 HOH D 23 179 99 HOH HOH . 
N 3 HOH D 24 180 107 HOH HOH . 
N 3 HOH D 25 181 128 HOH HOH . 
N 3 HOH D 26 182 129 HOH HOH . 
N 3 HOH D 27 183 130 HOH HOH . 
N 3 HOH D 28 184 131 HOH HOH . 
N 3 HOH D 29 185 132 HOH HOH . 
N 3 HOH D 30 186 134 HOH HOH . 
N 3 HOH D 31 187 143 HOH HOH . 
N 3 HOH D 32 188 148 HOH HOH . 
N 3 HOH D 33 189 155 HOH HOH . 
N 3 HOH D 34 190 157 HOH HOH . 
N 3 HOH D 35 191 161 HOH HOH . 
N 3 HOH D 36 192 163 HOH HOH . 
N 3 HOH D 37 193 166 HOH HOH . 
N 3 HOH D 38 194 171 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . J 2 19.265 40.82 35.421 1 70.88 ? C1 MPD 206 C 1 
HETATM 2 C C2 MPD . . . J 2 18.163 40.524 36.41 1 71.02 ? C2 MPD 206 C 1 
HETATM 3 O O2 MPD . . . J 2 18.801 40.446 37.716 1 72.4 ? O2 MPD 206 C 1 
HETATM 4 C CM MPD . . . J 2 17.116 41.602 36.373 1 72.16 ? CM MPD 206 C 1 
HETATM 5 C C3 MPD . . . J 2 17.483 39.173 36.164 1 67.37 ? C3 MPD 206 C 1 
HETATM 6 C C4 MPD . . . J 2 16.998 38.406 37.395 1 63.06 ? C4 MPD 206 C 1 
HETATM 7 O O4 MPD . . . J 2 16.009 39.124 38.108 1 69.66 ? O4 MPD 206 C 1 
HETATM 8 C C5 MPD . . . J 2 16.378 37.13 36.984 1 63.45 ? C5 MPD 206 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#