data_1JST
#
_model_server_result.job_id            R-Ovs63Ouy0LXNfoPgZv8A 
_model_server_result.datetime_utc      '2024-11-27 05:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jst 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":299}' 
#
_entry.id    1JST 
#
_exptl.entry_id    1JST 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JST 
_cell.length_a            139.6 
_cell.length_b            149.1 
_cell.length_c            74.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JST 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,E,F,I,J 2 1 
C,D,G,H,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 159 A TYR 159 1_555 A N TPO 160 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 A C TPO 160 A TPO 160 1_555 A N HIS 161 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C C TYR 159 C TYR 159 1_555 C N TPO 160 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 C C TPO 160 C TPO 160 1_555 C N HIS 161 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 A OD1 ASN 132 A ASN 132 1_555 E MN MN . A MN 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 E MN MN . A MN 299 1_555 F O2A ATP . A ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc3 C OD1 ASN 132 C ASN 132 1_555 G MN MN . C MN 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc4 G MN MN . C MN 299 1_555 H O2G ATP . C ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc5 G MN MN . C MN 299 1_555 H O5' ATP . C ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1JST 
_atom_sites.fract_transf_matrix[1][1]    0.007163 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006707 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 299 1 MN MN . 
F 4 ATP A 1 300 1 ATP ATP . 
G 3 MN C 1 299 2 MN MN . 
H 4 ATP C 1 300 2 ATP ATP . 
I 5 HOH A 1 301 2 HOH HOH . 
I 5 HOH A 2 302 3 HOH HOH . 
I 5 HOH A 3 303 4 HOH HOH . 
I 5 HOH A 4 304 5 HOH HOH . 
I 5 HOH A 5 305 6 HOH HOH . 
I 5 HOH A 6 306 7 HOH HOH . 
I 5 HOH A 7 307 8 HOH HOH . 
I 5 HOH A 8 308 9 HOH HOH . 
I 5 HOH A 9 309 10 HOH HOH . 
I 5 HOH A 10 310 11 HOH HOH . 
I 5 HOH A 11 311 12 HOH HOH . 
I 5 HOH A 12 312 13 HOH HOH . 
I 5 HOH A 13 313 14 HOH HOH . 
I 5 HOH A 14 314 15 HOH HOH . 
I 5 HOH A 15 315 16 HOH HOH . 
I 5 HOH A 16 316 17 HOH HOH . 
I 5 HOH A 17 317 18 HOH HOH . 
I 5 HOH A 18 318 19 HOH HOH . 
I 5 HOH A 19 319 20 HOH HOH . 
I 5 HOH A 20 320 21 HOH HOH . 
I 5 HOH A 21 321 22 HOH HOH . 
I 5 HOH A 22 322 23 HOH HOH . 
I 5 HOH A 23 323 24 HOH HOH . 
I 5 HOH A 24 324 25 HOH HOH . 
I 5 HOH A 25 325 26 HOH HOH . 
I 5 HOH A 26 326 27 HOH HOH . 
I 5 HOH A 27 327 36 HOH HOH . 
I 5 HOH A 28 328 69 HOH HOH . 
I 5 HOH A 29 329 74 HOH HOH . 
I 5 HOH A 30 330 75 HOH HOH . 
I 5 HOH A 31 331 76 HOH HOH . 
I 5 HOH A 32 332 77 HOH HOH . 
I 5 HOH A 33 333 78 HOH HOH . 
I 5 HOH A 34 334 82 HOH HOH . 
I 5 HOH A 35 335 83 HOH HOH . 
I 5 HOH A 36 336 89 HOH HOH . 
I 5 HOH A 37 337 90 HOH HOH . 
I 5 HOH A 38 338 91 HOH HOH . 
J 5 HOH B 1 1 1 HOH HOH . 
J 5 HOH B 2 28 28 HOH HOH . 
J 5 HOH B 3 29 29 HOH HOH . 
J 5 HOH B 4 30 30 HOH HOH . 
J 5 HOH B 5 31 31 HOH HOH . 
J 5 HOH B 6 32 32 HOH HOH . 
J 5 HOH B 7 33 33 HOH HOH . 
J 5 HOH B 8 34 34 HOH HOH . 
J 5 HOH B 9 35 35 HOH HOH . 
J 5 HOH B 10 37 37 HOH HOH . 
J 5 HOH B 11 38 38 HOH HOH . 
J 5 HOH B 12 39 39 HOH HOH . 
J 5 HOH B 13 40 40 HOH HOH . 
J 5 HOH B 14 41 41 HOH HOH . 
J 5 HOH B 15 42 42 HOH HOH . 
J 5 HOH B 16 43 43 HOH HOH . 
J 5 HOH B 17 44 44 HOH HOH . 
J 5 HOH B 18 45 45 HOH HOH . 
J 5 HOH B 19 84 84 HOH HOH . 
J 5 HOH B 20 85 85 HOH HOH . 
J 5 HOH B 21 86 86 HOH HOH . 
J 5 HOH B 22 92 92 HOH HOH . 
J 5 HOH B 23 96 96 HOH HOH . 
J 5 HOH B 24 97 97 HOH HOH . 
K 5 HOH C 1 301 47 HOH HOH . 
K 5 HOH C 2 302 48 HOH HOH . 
K 5 HOH C 3 303 49 HOH HOH . 
K 5 HOH C 4 304 51 HOH HOH . 
K 5 HOH C 5 305 52 HOH HOH . 
K 5 HOH C 6 306 53 HOH HOH . 
K 5 HOH C 7 307 54 HOH HOH . 
K 5 HOH C 8 308 55 HOH HOH . 
K 5 HOH C 9 309 56 HOH HOH . 
K 5 HOH C 10 310 57 HOH HOH . 
K 5 HOH C 11 311 58 HOH HOH . 
K 5 HOH C 12 312 59 HOH HOH . 
K 5 HOH C 13 313 60 HOH HOH . 
K 5 HOH C 14 314 61 HOH HOH . 
K 5 HOH C 15 315 79 HOH HOH . 
K 5 HOH C 16 316 80 HOH HOH . 
K 5 HOH C 17 317 88 HOH HOH . 
K 5 HOH C 18 318 93 HOH HOH . 
K 5 HOH C 19 319 94 HOH HOH . 
K 5 HOH C 20 320 95 HOH HOH . 
L 5 HOH D 1 50 50 HOH HOH . 
L 5 HOH D 2 62 62 HOH HOH . 
L 5 HOH D 3 63 63 HOH HOH . 
L 5 HOH D 4 64 64 HOH HOH . 
L 5 HOH D 5 65 65 HOH HOH . 
L 5 HOH D 6 66 66 HOH HOH . 
L 5 HOH D 7 67 67 HOH HOH . 
L 5 HOH D 8 68 68 HOH HOH . 
L 5 HOH D 9 70 70 HOH HOH . 
L 5 HOH D 10 71 71 HOH HOH . 
L 5 HOH D 11 72 72 HOH HOH . 
L 5 HOH D 12 73 73 HOH HOH . 
L 5 HOH D 13 81 81 HOH HOH . 
L 5 HOH D 14 87 87 HOH HOH . 
L 5 HOH D 15 98 98 HOH HOH . 
L 5 HOH D 16 99 99 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               87.272 
_atom_site.Cartn_y               56.432 
_atom_site.Cartn_z               34.917 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.5 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           299 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           392 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#