data_1JST # _model_server_result.job_id UOXrmnHhmnlDkTgXSSnEDg _model_server_result.datetime_utc '2024-11-14 19:00:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 1JST # _exptl.entry_id 1JST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JST _cell.length_a 139.6 _cell.length_b 149.1 _cell.length_c 74.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 159 A TYR 159 1_555 A N TPO 160 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C TPO 160 A TPO 160 1_555 A N HIS 161 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C TYR 159 C TYR 159 1_555 C N TPO 160 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 C C TPO 160 C TPO 160 1_555 C N HIS 161 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OD1 ASN 132 A ASN 132 1_555 E MN MN . A MN 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 E MN MN . A MN 299 1_555 F O2A ATP . A ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 C OD1 ASN 132 C ASN 132 1_555 G MN MN . C MN 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 G MN MN . C MN 299 1_555 H O2G ATP . C ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 G MN MN . C MN 299 1_555 H O5' ATP . C ATP 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1JST _atom_sites.fract_transf_matrix[1][1] 0.007163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 299 1 MN MN . F 4 ATP A 1 300 1 ATP ATP . G 3 MN C 1 299 2 MN MN . H 4 ATP C 1 300 2 ATP ATP . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 3 HOH HOH . I 5 HOH A 3 303 4 HOH HOH . I 5 HOH A 4 304 5 HOH HOH . I 5 HOH A 5 305 6 HOH HOH . I 5 HOH A 6 306 7 HOH HOH . I 5 HOH A 7 307 8 HOH HOH . I 5 HOH A 8 308 9 HOH HOH . I 5 HOH A 9 309 10 HOH HOH . I 5 HOH A 10 310 11 HOH HOH . I 5 HOH A 11 311 12 HOH HOH . I 5 HOH A 12 312 13 HOH HOH . I 5 HOH A 13 313 14 HOH HOH . I 5 HOH A 14 314 15 HOH HOH . I 5 HOH A 15 315 16 HOH HOH . I 5 HOH A 16 316 17 HOH HOH . I 5 HOH A 17 317 18 HOH HOH . I 5 HOH A 18 318 19 HOH HOH . I 5 HOH A 19 319 20 HOH HOH . I 5 HOH A 20 320 21 HOH HOH . I 5 HOH A 21 321 22 HOH HOH . I 5 HOH A 22 322 23 HOH HOH . I 5 HOH A 23 323 24 HOH HOH . I 5 HOH A 24 324 25 HOH HOH . I 5 HOH A 25 325 26 HOH HOH . I 5 HOH A 26 326 27 HOH HOH . I 5 HOH A 27 327 36 HOH HOH . I 5 HOH A 28 328 69 HOH HOH . I 5 HOH A 29 329 74 HOH HOH . I 5 HOH A 30 330 75 HOH HOH . I 5 HOH A 31 331 76 HOH HOH . I 5 HOH A 32 332 77 HOH HOH . I 5 HOH A 33 333 78 HOH HOH . I 5 HOH A 34 334 82 HOH HOH . I 5 HOH A 35 335 83 HOH HOH . I 5 HOH A 36 336 89 HOH HOH . I 5 HOH A 37 337 90 HOH HOH . I 5 HOH A 38 338 91 HOH HOH . J 5 HOH B 1 1 1 HOH HOH . J 5 HOH B 2 28 28 HOH HOH . J 5 HOH B 3 29 29 HOH HOH . J 5 HOH B 4 30 30 HOH HOH . J 5 HOH B 5 31 31 HOH HOH . J 5 HOH B 6 32 32 HOH HOH . J 5 HOH B 7 33 33 HOH HOH . J 5 HOH B 8 34 34 HOH HOH . J 5 HOH B 9 35 35 HOH HOH . J 5 HOH B 10 37 37 HOH HOH . J 5 HOH B 11 38 38 HOH HOH . J 5 HOH B 12 39 39 HOH HOH . J 5 HOH B 13 40 40 HOH HOH . J 5 HOH B 14 41 41 HOH HOH . J 5 HOH B 15 42 42 HOH HOH . J 5 HOH B 16 43 43 HOH HOH . J 5 HOH B 17 44 44 HOH HOH . J 5 HOH B 18 45 45 HOH HOH . J 5 HOH B 19 84 84 HOH HOH . J 5 HOH B 20 85 85 HOH HOH . J 5 HOH B 21 86 86 HOH HOH . J 5 HOH B 22 92 92 HOH HOH . J 5 HOH B 23 96 96 HOH HOH . J 5 HOH B 24 97 97 HOH HOH . K 5 HOH C 1 301 47 HOH HOH . K 5 HOH C 2 302 48 HOH HOH . K 5 HOH C 3 303 49 HOH HOH . K 5 HOH C 4 304 51 HOH HOH . K 5 HOH C 5 305 52 HOH HOH . K 5 HOH C 6 306 53 HOH HOH . K 5 HOH C 7 307 54 HOH HOH . K 5 HOH C 8 308 55 HOH HOH . K 5 HOH C 9 309 56 HOH HOH . K 5 HOH C 10 310 57 HOH HOH . K 5 HOH C 11 311 58 HOH HOH . K 5 HOH C 12 312 59 HOH HOH . K 5 HOH C 13 313 60 HOH HOH . K 5 HOH C 14 314 61 HOH HOH . K 5 HOH C 15 315 79 HOH HOH . K 5 HOH C 16 316 80 HOH HOH . K 5 HOH C 17 317 88 HOH HOH . K 5 HOH C 18 318 93 HOH HOH . K 5 HOH C 19 319 94 HOH HOH . K 5 HOH C 20 320 95 HOH HOH . L 5 HOH D 1 50 50 HOH HOH . L 5 HOH D 2 62 62 HOH HOH . L 5 HOH D 3 63 63 HOH HOH . L 5 HOH D 4 64 64 HOH HOH . L 5 HOH D 5 65 65 HOH HOH . L 5 HOH D 6 66 66 HOH HOH . L 5 HOH D 7 67 67 HOH HOH . L 5 HOH D 8 68 68 HOH HOH . L 5 HOH D 9 70 70 HOH HOH . L 5 HOH D 10 71 71 HOH HOH . L 5 HOH D 11 72 72 HOH HOH . L 5 HOH D 12 73 73 HOH HOH . L 5 HOH D 13 81 81 HOH HOH . L 5 HOH D 14 87 87 HOH HOH . L 5 HOH D 15 98 98 HOH HOH . L 5 HOH D 16 99 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 81.958 55.946 33.887 1 90 ? PG ATP 300 A 1 HETATM 2 O O1G ATP . . . F 4 83.116 56.328 34.799 1 89.87 ? O1G ATP 300 A 1 HETATM 3 O O2G ATP . . . F 4 80.622 56.378 34.355 1 90 ? O2G ATP 300 A 1 HETATM 4 O O3G ATP . . . F 4 82.157 56.276 32.431 1 90 ? O3G ATP 300 A 1 HETATM 5 P PB ATP . . . F 4 83.225 53.2 34.301 1 90 ? PB ATP 300 A 1 HETATM 6 O O1B ATP . . . F 4 84.025 53.698 35.503 1 90 ? O1B ATP 300 A 1 HETATM 7 O O2B ATP . . . F 4 82.699 51.803 34.27 1 89.78 ? O2B ATP 300 A 1 HETATM 8 O O3B ATP . . . F 4 81.934 54.263 33.995 1 90 ? O3B ATP 300 A 1 HETATM 9 P PA ATP . . . F 4 85.705 53.961 32.616 1 90 ? PA ATP 300 A 1 HETATM 10 O O1A ATP . . . F 4 86.143 53.493 31.293 1 89.48 ? O1A ATP 300 A 1 HETATM 11 O O2A ATP . . . F 4 86.034 55.373 33.046 1 90 ? O2A ATP 300 A 1 HETATM 12 O O3A ATP . . . F 4 84.137 53.544 32.913 1 90 ? O3A ATP 300 A 1 HETATM 13 O O5' ATP . . . F 4 86.636 53.247 33.851 1 90 ? O5' ATP 300 A 1 HETATM 14 C C5' ATP . . . F 4 86.496 52.322 35.039 1 89.31 ? C5' ATP 300 A 1 HETATM 15 C C4' ATP . . . F 4 87.551 51.243 34.972 1 87.47 ? C4' ATP 300 A 1 HETATM 16 O O4' ATP . . . F 4 86.964 50.17 34.204 1 85.54 ? O4' ATP 300 A 1 HETATM 17 C C3' ATP . . . F 4 88.755 51.789 34.175 1 88.02 ? C3' ATP 300 A 1 HETATM 18 O O3' ATP . . . F 4 89.873 52.207 35.029 1 88.27 ? O3' ATP 300 A 1 HETATM 19 C C2' ATP . . . F 4 89.076 50.719 33.18 1 88.09 ? C2' ATP 300 A 1 HETATM 20 O O2' ATP . . . F 4 90.328 50.093 33.538 1 90 ? O2' ATP 300 A 1 HETATM 21 C C1' ATP . . . F 4 87.844 49.721 33.181 1 85.23 ? C1' ATP 300 A 1 HETATM 22 N N9 ATP . . . F 4 87.324 49.788 31.77 1 81.06 ? N9 ATP 300 A 1 HETATM 23 C C8 ATP . . . F 4 86.307 50.549 31.243 1 79.47 ? C8 ATP 300 A 1 HETATM 24 N N7 ATP . . . F 4 86.318 50.628 29.929 1 78.73 ? N7 ATP 300 A 1 HETATM 25 C C5 ATP . . . F 4 87.429 49.837 29.535 1 77.64 ? C5 ATP 300 A 1 HETATM 26 C C6 ATP . . . F 4 88.021 49.507 28.272 1 74.86 ? C6 ATP 300 A 1 HETATM 27 N N6 ATP . . . F 4 87.572 49.954 27.115 1 73.59 ? N6 ATP 300 A 1 HETATM 28 N N1 ATP . . . F 4 89.091 48.71 28.264 1 73.34 ? N1 ATP 300 A 1 HETATM 29 C C2 ATP . . . F 4 89.557 48.268 29.407 1 73.52 ? C2 ATP 300 A 1 HETATM 30 N N3 ATP . . . F 4 89.133 48.487 30.627 1 75.75 ? N3 ATP 300 A 1 HETATM 31 C C4 ATP . . . F 4 88.035 49.305 30.643 1 78.28 ? C4 ATP 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #