data_1JSZ # _model_server_result.job_id LUTWDJXBJo953OZtpEiP8g _model_server_result.datetime_utc '2024-11-20 07:29:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1JSZ # _exptl.entry_id 1JSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.1 _cell.angle_gamma 90 _cell.entry_id 1JSZ _cell.length_a 84.3 _cell.length_b 67.7 _cell.length_c 79.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 305 n n N HN1 SAH sing 306 n n N HN2 SAH sing 307 n n CA CB SAH sing 308 n n CA C SAH sing 309 n n CA HA SAH sing 310 n n CB CG SAH sing 311 n n CB HB1 SAH sing 312 n n CB HB2 SAH sing 313 n n CG SD SAH sing 314 n n CG HG1 SAH sing 315 n n CG HG2 SAH sing 316 n n SD C5' SAH sing 317 n n C O SAH doub 318 n n C OXT SAH sing 319 n n OXT HXT SAH sing 320 n n C5' C4' SAH sing 321 n n C5' "H5'1" SAH sing 322 n n C5' "H5'2" SAH sing 323 n n C4' O4' SAH sing 324 n n C4' C3' SAH sing 325 n n C4' H4' SAH sing 326 n n O4' C1' SAH sing 327 n n C3' O3' SAH sing 328 n n C3' C2' SAH sing 329 n n C3' H3' SAH sing 330 n n O3' HO3' SAH sing 331 n n C2' O2' SAH sing 332 n n C2' C1' SAH sing 333 n n C2' H2' SAH sing 334 n n O2' HO2' SAH sing 335 n n C1' N9 SAH sing 336 n n C1' H1' SAH sing 337 n n N9 C8 SAH sing 338 n y N9 C4 SAH sing 339 n y C8 N7 SAH doub 340 n y C8 H8 SAH sing 341 n n N7 C5 SAH sing 342 n y C5 C6 SAH sing 343 n y C5 C4 SAH doub 344 n y C6 N6 SAH sing 345 n n C6 N1 SAH doub 346 n y N6 HN61 SAH sing 347 n n N6 HN62 SAH sing 348 n n N1 C2 SAH sing 349 n y C2 N3 SAH doub 350 n y C2 H2 SAH sing 351 n n N3 C4 SAH sing 352 n y # _atom_sites.entry_id 1JSZ _atom_sites.fract_transf_matrix[1][1] 0.011862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006334 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 400 400 SAH SAH . C 3 NDM A 1 600 600 NDM DMG . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 643 HOH HOH . D 4 HOH A 44 644 644 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . D 4 HOH A 82 682 682 HOH HOH . D 4 HOH A 83 683 683 HOH HOH . D 4 HOH A 84 684 684 HOH HOH . D 4 HOH A 85 685 685 HOH HOH . D 4 HOH A 86 686 686 HOH HOH . D 4 HOH A 87 687 687 HOH HOH . D 4 HOH A 88 688 688 HOH HOH . D 4 HOH A 89 689 689 HOH HOH . D 4 HOH A 90 690 690 HOH HOH . D 4 HOH A 91 691 691 HOH HOH . D 4 HOH A 92 692 692 HOH HOH . D 4 HOH A 93 693 693 HOH HOH . D 4 HOH A 94 694 694 HOH HOH . D 4 HOH A 95 695 695 HOH HOH . D 4 HOH A 96 696 696 HOH HOH . D 4 HOH A 97 697 697 HOH HOH . D 4 HOH A 98 698 698 HOH HOH . D 4 HOH A 99 699 699 HOH HOH . D 4 HOH A 100 700 700 HOH HOH . D 4 HOH A 101 701 701 HOH HOH . D 4 HOH A 102 702 702 HOH HOH . D 4 HOH A 103 703 703 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 705 HOH HOH . D 4 HOH A 106 706 706 HOH HOH . D 4 HOH A 107 707 707 HOH HOH . D 4 HOH A 108 708 708 HOH HOH . D 4 HOH A 109 709 709 HOH HOH . D 4 HOH A 110 710 710 HOH HOH . D 4 HOH A 111 711 711 HOH HOH . D 4 HOH A 112 712 712 HOH HOH . D 4 HOH A 113 713 713 HOH HOH . D 4 HOH A 114 714 714 HOH HOH . D 4 HOH A 115 715 715 HOH HOH . D 4 HOH A 116 716 716 HOH HOH . D 4 HOH A 117 717 717 HOH HOH . D 4 HOH A 118 718 718 HOH HOH . D 4 HOH A 119 719 719 HOH HOH . D 4 HOH A 120 720 720 HOH HOH . D 4 HOH A 121 721 721 HOH HOH . D 4 HOH A 122 722 722 HOH HOH . D 4 HOH A 123 723 723 HOH HOH . D 4 HOH A 124 724 724 HOH HOH . D 4 HOH A 125 725 725 HOH HOH . D 4 HOH A 126 726 726 HOH HOH . D 4 HOH A 127 727 727 HOH HOH . D 4 HOH A 128 728 728 HOH HOH . D 4 HOH A 129 729 729 HOH HOH . D 4 HOH A 130 730 730 HOH HOH . D 4 HOH A 131 731 731 HOH HOH . D 4 HOH A 132 732 732 HOH HOH . D 4 HOH A 133 733 733 HOH HOH . D 4 HOH A 134 734 734 HOH HOH . D 4 HOH A 135 735 735 HOH HOH . D 4 HOH A 136 736 736 HOH HOH . D 4 HOH A 137 737 737 HOH HOH . D 4 HOH A 138 738 738 HOH HOH . D 4 HOH A 139 739 739 HOH HOH . D 4 HOH A 140 740 740 HOH HOH . D 4 HOH A 141 741 741 HOH HOH . D 4 HOH A 142 742 742 HOH HOH . D 4 HOH A 143 743 743 HOH HOH . D 4 HOH A 144 744 744 HOH HOH . D 4 HOH A 145 745 745 HOH HOH . D 4 HOH A 146 746 746 HOH HOH . D 4 HOH A 147 747 747 HOH HOH . D 4 HOH A 148 748 748 HOH HOH . D 4 HOH A 149 749 749 HOH HOH . D 4 HOH A 150 750 750 HOH HOH . D 4 HOH A 151 751 751 HOH HOH . D 4 HOH A 152 752 752 HOH HOH . D 4 HOH A 153 753 753 HOH HOH . D 4 HOH A 154 754 754 HOH HOH . D 4 HOH A 155 755 755 HOH HOH . D 4 HOH A 156 756 756 HOH HOH . D 4 HOH A 157 757 757 HOH HOH . D 4 HOH A 158 758 758 HOH HOH . D 4 HOH A 159 759 759 HOH HOH . D 4 HOH A 160 760 760 HOH HOH . D 4 HOH A 161 761 761 HOH HOH . D 4 HOH A 162 762 762 HOH HOH . D 4 HOH A 163 763 763 HOH HOH . D 4 HOH A 164 764 764 HOH HOH . D 4 HOH A 165 765 765 HOH HOH . D 4 HOH A 166 1675 675 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -4.579 12.816 23.966 1 5.37 ? N SAH 400 A 1 HETATM 2 C CA SAH . . . B 2 -4.703 11.827 25.023 1 4.88 ? CA SAH 400 A 1 HETATM 3 C CB SAH . . . B 2 -3.398 11.017 25.135 1 2.83 ? CB SAH 400 A 1 HETATM 4 C CG SAH . . . B 2 -2.987 10.334 23.802 1 2.39 ? CG SAH 400 A 1 HETATM 5 S SD SAH . . . B 2 -1.615 9.174 23.932 1 7.51 ? SD SAH 400 A 1 HETATM 6 C C SAH . . . B 2 -5.048 12.511 26.35 1 7.16 ? C SAH 400 A 1 HETATM 7 O O SAH . . . B 2 -5.485 13.68 26.304 1 6.77 ? O SAH 400 A 1 HETATM 8 O OXT SAH . . . B 2 -4.769 11.93 27.427 1 3.91 ? OXT SAH 400 A 1 HETATM 9 C C5' SAH . . . B 2 -1.674 8.501 22.275 1 3.81 ? C5' SAH 400 A 1 HETATM 10 C C4' SAH . . . B 2 -2.964 7.794 21.992 1 6.14 ? C4' SAH 400 A 1 HETATM 11 O O4' SAH . . . B 2 -2.965 7.67 20.563 1 7.5 ? O4' SAH 400 A 1 HETATM 12 C C3' SAH . . . B 2 -3.183 6.43 22.553 1 6.46 ? C3' SAH 400 A 1 HETATM 13 O O3' SAH . . . B 2 -4.437 6.525 23.327 1 8.43 ? O3' SAH 400 A 1 HETATM 14 C C2' SAH . . . B 2 -3.35 5.582 21.338 1 5.59 ? C2' SAH 400 A 1 HETATM 15 O O2' SAH . . . B 2 -4.315 4.467 21.491 1 6.29 ? O2' SAH 400 A 1 HETATM 16 C C1' SAH . . . B 2 -3.862 6.52 20.359 1 7.08 ? C1' SAH 400 A 1 HETATM 17 N N9 SAH . . . B 2 -3.759 6.123 18.922 1 8.01 ? N9 SAH 400 A 1 HETATM 18 C C8 SAH . . . B 2 -2.628 5.652 18.255 1 6.12 ? C8 SAH 400 A 1 HETATM 19 N N7 SAH . . . B 2 -2.929 5.386 16.872 1 6.06 ? N7 SAH 400 A 1 HETATM 20 C C5 SAH . . . B 2 -4.304 5.737 16.782 1 6.97 ? C5 SAH 400 A 1 HETATM 21 C C6 SAH . . . B 2 -5.254 5.725 15.742 1 7.79 ? C6 SAH 400 A 1 HETATM 22 N N6 SAH . . . B 2 -4.982 5.443 14.458 1 10.69 ? N6 SAH 400 A 1 HETATM 23 N N1 SAH . . . B 2 -6.499 6.094 16.008 1 6.54 ? N1 SAH 400 A 1 HETATM 24 C C2 SAH . . . B 2 -6.853 6.485 17.19 1 4.83 ? C2 SAH 400 A 1 HETATM 25 N N3 SAH . . . B 2 -6.078 6.565 18.216 1 2.79 ? N3 SAH 400 A 1 HETATM 26 C C4 SAH . . . B 2 -4.805 6.173 17.977 1 7.09 ? C4 SAH 400 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #