data_1JTF
#
_model_server_result.job_id            7qzMb6gkNc-9YYLKq1KiSg 
_model_server_result.datetime_utc      '2024-11-20 09:24:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jtf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
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_entry.id    1JTF 
#
_exptl.entry_id    1JTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.11 
_cell.angle_gamma         90 
_cell.entry_id            1JTF 
_cell.length_a            84.245 
_cell.length_b            67.741 
_cell.length_c            79.635 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 326 n n 
N HN1 SAH sing 327 n n 
N HN2 SAH sing 328 n n 
CA CB SAH sing 329 n n 
CA C SAH sing 330 n n 
CA HA SAH sing 331 n n 
CB CG SAH sing 332 n n 
CB HB1 SAH sing 333 n n 
CB HB2 SAH sing 334 n n 
CG SD SAH sing 335 n n 
CG HG1 SAH sing 336 n n 
CG HG2 SAH sing 337 n n 
SD C5' SAH sing 338 n n 
C O SAH doub 339 n n 
C OXT SAH sing 340 n n 
OXT HXT SAH sing 341 n n 
C5' C4' SAH sing 342 n n 
C5' "H5'1" SAH sing 343 n n 
C5' "H5'2" SAH sing 344 n n 
C4' O4' SAH sing 345 n n 
C4' C3' SAH sing 346 n n 
C4' H4' SAH sing 347 n n 
O4' C1' SAH sing 348 n n 
C3' O3' SAH sing 349 n n 
C3' C2' SAH sing 350 n n 
C3' H3' SAH sing 351 n n 
O3' HO3' SAH sing 352 n n 
C2' O2' SAH sing 353 n n 
C2' C1' SAH sing 354 n n 
C2' H2' SAH sing 355 n n 
O2' HO2' SAH sing 356 n n 
C1' N9 SAH sing 357 n n 
C1' H1' SAH sing 358 n n 
N9 C8 SAH sing 359 n y 
N9 C4 SAH sing 360 n y 
C8 N7 SAH doub 361 n y 
C8 H8 SAH sing 362 n n 
N7 C5 SAH sing 363 n y 
C5 C6 SAH sing 364 n y 
C5 C4 SAH doub 365 n y 
C6 N6 SAH sing 366 n n 
C6 N1 SAH doub 367 n y 
N6 HN61 SAH sing 368 n n 
N6 HN62 SAH sing 369 n n 
N1 C2 SAH sing 370 n y 
C2 N3 SAH doub 371 n y 
C2 H2 SAH sing 372 n n 
N3 C4 SAH sing 373 n y 
#
_atom_sites.entry_id                     1JTF 
_atom_sites.fract_transf_matrix[1][1]    0.01187 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006341 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 400 400 SAH SAH . 
C 3 M7G A 1 401 401 M7G MDG . 
D 4 HOH A 1 501 501 HOH HOH . 
D 4 HOH A 2 502 502 HOH HOH . 
D 4 HOH A 3 503 503 HOH HOH . 
D 4 HOH A 4 504 504 HOH HOH . 
D 4 HOH A 5 505 505 HOH HOH . 
D 4 HOH A 6 506 506 HOH HOH . 
D 4 HOH A 7 507 507 HOH HOH . 
D 4 HOH A 8 508 508 HOH HOH . 
D 4 HOH A 9 509 509 HOH HOH . 
D 4 HOH A 10 510 510 HOH HOH . 
D 4 HOH A 11 511 511 HOH HOH . 
D 4 HOH A 12 512 512 HOH HOH . 
D 4 HOH A 13 513 513 HOH HOH . 
D 4 HOH A 14 514 514 HOH HOH . 
D 4 HOH A 15 515 515 HOH HOH . 
D 4 HOH A 16 516 516 HOH HOH . 
D 4 HOH A 17 517 517 HOH HOH . 
D 4 HOH A 18 518 518 HOH HOH . 
D 4 HOH A 19 519 519 HOH HOH . 
D 4 HOH A 20 520 520 HOH HOH . 
D 4 HOH A 21 521 521 HOH HOH . 
D 4 HOH A 22 522 522 HOH HOH . 
D 4 HOH A 23 523 523 HOH HOH . 
D 4 HOH A 24 524 524 HOH HOH . 
D 4 HOH A 25 525 525 HOH HOH . 
D 4 HOH A 26 526 526 HOH HOH . 
D 4 HOH A 27 527 527 HOH HOH . 
D 4 HOH A 28 528 528 HOH HOH . 
D 4 HOH A 29 529 529 HOH HOH . 
D 4 HOH A 30 601 601 HOH HOH . 
D 4 HOH A 31 602 602 HOH HOH . 
D 4 HOH A 32 603 603 HOH HOH . 
D 4 HOH A 33 604 604 HOH HOH . 
D 4 HOH A 34 605 605 HOH HOH . 
D 4 HOH A 35 606 606 HOH HOH . 
D 4 HOH A 36 607 607 HOH HOH . 
D 4 HOH A 37 608 608 HOH HOH . 
D 4 HOH A 38 609 609 HOH HOH . 
D 4 HOH A 39 610 610 HOH HOH . 
D 4 HOH A 40 611 611 HOH HOH . 
D 4 HOH A 41 612 612 HOH HOH . 
D 4 HOH A 42 613 613 HOH HOH . 
D 4 HOH A 43 614 614 HOH HOH . 
D 4 HOH A 44 615 615 HOH HOH . 
D 4 HOH A 45 616 616 HOH HOH . 
D 4 HOH A 46 617 617 HOH HOH . 
D 4 HOH A 47 618 618 HOH HOH . 
D 4 HOH A 48 619 619 HOH HOH . 
D 4 HOH A 49 620 620 HOH HOH . 
D 4 HOH A 50 621 621 HOH HOH . 
D 4 HOH A 51 622 622 HOH HOH . 
D 4 HOH A 52 623 623 HOH HOH . 
D 4 HOH A 53 624 624 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 -4.452 13.07 23.88 1 6.24 ? N SAH 400 A 1 
HETATM 2 C CA SAH . . . B 2 -4.513 11.987 24.857 1 5.19 ? CA SAH 400 A 1 
HETATM 3 C CB SAH . . . B 2 -3.242 11.112 24.793 1 2.84 ? CB SAH 400 A 1 
HETATM 4 C CG SAH . . . B 2 -2.904 10.456 23.458 1 4.84 ? CG SAH 400 A 1 
HETATM 5 S SD SAH . . . B 2 -1.624 9.219 23.719 1 2 ? SD SAH 400 A 1 
HETATM 6 C C SAH . . . B 2 -4.701 12.554 26.281 1 5.39 ? C SAH 400 A 1 
HETATM 7 O O SAH . . . B 2 -5.492 13.513 26.413 1 2.65 ? O SAH 400 A 1 
HETATM 8 O OXT SAH . . . B 2 -4.208 11.934 27.255 1 8.47 ? OXT SAH 400 A 1 
HETATM 9 C C5' SAH . . . B 2 -1.652 8.442 22.153 1 5.74 ? C5' SAH 400 A 1 
HETATM 10 C C4' SAH . . . B 2 -2.928 7.805 21.95 1 11.43 ? C4' SAH 400 A 1 
HETATM 11 O O4' SAH . . . B 2 -3.077 7.825 20.544 1 14.93 ? O4' SAH 400 A 1 
HETATM 12 C C3' SAH . . . B 2 -3.013 6.453 22.437 1 10.73 ? C3' SAH 400 A 1 
HETATM 13 O O3' SAH . . . B 2 -4.155 6.226 23.29 1 18.68 ? O3' SAH 400 A 1 
HETATM 14 C C2' SAH . . . B 2 -3.216 5.682 21.246 1 11.51 ? C2' SAH 400 A 1 
HETATM 15 O O2' SAH . . . B 2 -4.115 4.542 21.416 1 3.41 ? O2' SAH 400 A 1 
HETATM 16 C C1' SAH . . . B 2 -3.782 6.624 20.332 1 13.41 ? C1' SAH 400 A 1 
HETATM 17 N N9 SAH . . . B 2 -3.609 6.232 18.951 1 14.72 ? N9 SAH 400 A 1 
HETATM 18 C C8 SAH . . . B 2 -2.547 5.675 18.306 1 14.97 ? C8 SAH 400 A 1 
HETATM 19 N N7 SAH . . . B 2 -2.881 5.285 16.962 1 15.05 ? N7 SAH 400 A 1 
HETATM 20 C C5 SAH . . . B 2 -4.262 5.705 16.911 1 15.75 ? C5 SAH 400 A 1 
HETATM 21 C C6 SAH . . . B 2 -5.295 5.658 15.916 1 16.93 ? C6 SAH 400 A 1 
HETATM 22 N N6 SAH . . . B 2 -5.139 5.26 14.635 1 14.81 ? N6 SAH 400 A 1 
HETATM 23 N N1 SAH . . . B 2 -6.47 6.144 16.241 1 13.95 ? N1 SAH 400 A 1 
HETATM 24 C C2 SAH . . . B 2 -6.637 6.659 17.398 1 13.32 ? C2 SAH 400 A 1 
HETATM 25 N N3 SAH . . . B 2 -5.842 6.802 18.413 1 15.72 ? N3 SAH 400 A 1 
HETATM 26 C C4 SAH . . . B 2 -4.658 6.271 18.095 1 14.23 ? C4 SAH 400 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#