data_1JTF
#
_model_server_result.job_id            06jCkPT0ZV_1EqOclR-wnw 
_model_server_result.datetime_utc      '2024-11-20 09:10:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jtf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    1JTF 
#
_exptl.entry_id    1JTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.11 
_cell.angle_gamma         90 
_cell.entry_id            1JTF 
_cell.length_a            84.245 
_cell.length_b            67.741 
_cell.length_c            79.635 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H18 N5 O11 P2 1' 
_chem_comp.formula_weight    458.235 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n y 
N9 C4 M7G sing 248 n y 
C8 N7 M7G doub 249 n y 
C8 H81 M7G sing 250 n n 
N7 CM7 M7G sing 251 n n 
N7 C5 M7G sing 252 n y 
CM7 HM71 M7G sing 253 n n 
CM7 HM72 M7G sing 254 n n 
CM7 HM73 M7G sing 255 n n 
C5 C6 M7G sing 256 n n 
C5 C4 M7G doub 257 n y 
C6 O6 M7G doub 258 n n 
C6 N1 M7G sing 259 n n 
N1 C2 M7G sing 260 n n 
N1 HN1 M7G sing 261 n n 
C2 N2 M7G sing 262 n n 
C2 N3 M7G doub 263 n n 
N2 HN21 M7G sing 264 n n 
N2 HN22 M7G sing 265 n n 
N3 C4 M7G sing 266 n n 
#
_atom_sites.entry_id                     1JTF 
_atom_sites.fract_transf_matrix[1][1]    0.01187 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006341 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 400 400 SAH SAH . 
C 3 M7G A 1 401 401 M7G MDG . 
D 4 HOH A 1 501 501 HOH HOH . 
D 4 HOH A 2 502 502 HOH HOH . 
D 4 HOH A 3 503 503 HOH HOH . 
D 4 HOH A 4 504 504 HOH HOH . 
D 4 HOH A 5 505 505 HOH HOH . 
D 4 HOH A 6 506 506 HOH HOH . 
D 4 HOH A 7 507 507 HOH HOH . 
D 4 HOH A 8 508 508 HOH HOH . 
D 4 HOH A 9 509 509 HOH HOH . 
D 4 HOH A 10 510 510 HOH HOH . 
D 4 HOH A 11 511 511 HOH HOH . 
D 4 HOH A 12 512 512 HOH HOH . 
D 4 HOH A 13 513 513 HOH HOH . 
D 4 HOH A 14 514 514 HOH HOH . 
D 4 HOH A 15 515 515 HOH HOH . 
D 4 HOH A 16 516 516 HOH HOH . 
D 4 HOH A 17 517 517 HOH HOH . 
D 4 HOH A 18 518 518 HOH HOH . 
D 4 HOH A 19 519 519 HOH HOH . 
D 4 HOH A 20 520 520 HOH HOH . 
D 4 HOH A 21 521 521 HOH HOH . 
D 4 HOH A 22 522 522 HOH HOH . 
D 4 HOH A 23 523 523 HOH HOH . 
D 4 HOH A 24 524 524 HOH HOH . 
D 4 HOH A 25 525 525 HOH HOH . 
D 4 HOH A 26 526 526 HOH HOH . 
D 4 HOH A 27 527 527 HOH HOH . 
D 4 HOH A 28 528 528 HOH HOH . 
D 4 HOH A 29 529 529 HOH HOH . 
D 4 HOH A 30 601 601 HOH HOH . 
D 4 HOH A 31 602 602 HOH HOH . 
D 4 HOH A 32 603 603 HOH HOH . 
D 4 HOH A 33 604 604 HOH HOH . 
D 4 HOH A 34 605 605 HOH HOH . 
D 4 HOH A 35 606 606 HOH HOH . 
D 4 HOH A 36 607 607 HOH HOH . 
D 4 HOH A 37 608 608 HOH HOH . 
D 4 HOH A 38 609 609 HOH HOH . 
D 4 HOH A 39 610 610 HOH HOH . 
D 4 HOH A 40 611 611 HOH HOH . 
D 4 HOH A 41 612 612 HOH HOH . 
D 4 HOH A 42 613 613 HOH HOH . 
D 4 HOH A 43 614 614 HOH HOH . 
D 4 HOH A 44 615 615 HOH HOH . 
D 4 HOH A 45 616 616 HOH HOH . 
D 4 HOH A 46 617 617 HOH HOH . 
D 4 HOH A 47 618 618 HOH HOH . 
D 4 HOH A 48 619 619 HOH HOH . 
D 4 HOH A 49 620 620 HOH HOH . 
D 4 HOH A 50 621 621 HOH HOH . 
D 4 HOH A 51 622 622 HOH HOH . 
D 4 HOH A 52 623 623 HOH HOH . 
D 4 HOH A 53 624 624 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . C 3 12.14 11.713 23.861 1 70.28 ? PA M7G 401 A 1 
HETATM 2 O O1A M7G . . . C 3 11.772 12.703 24.905 1 77.18 ? O1A M7G 401 A 1 
HETATM 3 O O2A M7G . . . C 3 12.795 12.229 22.629 1 71.55 ? O2A M7G 401 A 1 
HETATM 4 O O3A M7G . . . C 3 10.81 10.881 23.474 1 77.53 ? O3A M7G 401 A 1 
HETATM 5 O O5' M7G . . . C 3 13.102 10.62 24.539 1 69.38 ? O5' M7G 401 A 1 
HETATM 6 P PB M7G . . . C 3 9.588 11.438 22.576 1 78.6 ? PB M7G 401 A 1 
HETATM 7 O O1B M7G . . . C 3 10.07 12.615 21.815 1 77.64 ? O1B M7G 401 A 1 
HETATM 8 O O2B M7G . . . C 3 9.077 10.266 21.816 1 78.15 ? O2B M7G 401 A 1 
HETATM 9 O O3B M7G . . . C 3 8.397 11.894 23.567 1 71.46 ? O3B M7G 401 A 1 
HETATM 10 C C5' M7G . . . C 3 13.408 9.354 23.924 1 58.1 ? C5' M7G 401 A 1 
HETATM 11 C C4' M7G . . . C 3 14.78 9.326 23.247 1 58.99 ? C4' M7G 401 A 1 
HETATM 12 O O4' M7G . . . C 3 14.873 10.366 22.278 1 51.55 ? O4' M7G 401 A 1 
HETATM 13 C C3' M7G . . . C 3 15.893 9.626 24.232 1 56.46 ? C3' M7G 401 A 1 
HETATM 14 O O3' M7G . . . C 3 16.288 8.437 24.934 1 56.04 ? O3' M7G 401 A 1 
HETATM 15 C C2' M7G . . . C 3 17.024 10.118 23.346 1 50.25 ? C2' M7G 401 A 1 
HETATM 16 O O2' M7G . . . C 3 17.864 9.057 22.881 1 51.96 ? O2' M7G 401 A 1 
HETATM 17 C C1' M7G . . . C 3 16.274 10.651 22.123 1 48.38 ? C1' M7G 401 A 1 
HETATM 18 N N9 M7G . . . C 3 16.383 12.11 21.931 1 43.18 ? N9 M7G 401 A 1 
HETATM 19 C C8 M7G . . . C 3 15.706 13.111 22.579 1 41.73 ? C8 M7G 401 A 1 
HETATM 20 N N7 M7G . . . C 3 15.932 14.291 22.105 1 40.42 ? N7 M7G 401 A 1 
HETATM 21 C C5 M7G . . . C 3 16.83 14.07 21.07 1 41.64 ? C5 M7G 401 A 1 
HETATM 22 C C6 M7G . . . C 3 17.438 14.987 20.187 1 39.57 ? C6 M7G 401 A 1 
HETATM 23 O O6 M7G . . . C 3 17.294 16.197 20.136 1 39.46 ? O6 M7G 401 A 1 
HETATM 24 N N1 M7G . . . C 3 18.28 14.368 19.289 1 38.72 ? N1 M7G 401 A 1 
HETATM 25 C C2 M7G . . . C 3 18.535 13.014 19.224 1 40.08 ? C2 M7G 401 A 1 
HETATM 26 N N2 M7G . . . C 3 19.377 12.586 18.282 1 42.69 ? N2 M7G 401 A 1 
HETATM 27 N N3 M7G . . . C 3 17.958 12.142 20.064 1 41.05 ? N3 M7G 401 A 1 
HETATM 28 C C4 M7G . . . C 3 17.121 12.737 20.954 1 40.55 ? C4 M7G 401 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#