data_1JTQ # _model_server_result.job_id tp9WROvdgyWkVIUOu0rJgg _model_server_result.datetime_utc '2024-11-27 01:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jtq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1JTQ # _exptl.entry_id 1JTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-4-(2H-TETRAZOL-5-YL)-BUTYRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JTQ _cell.length_a 127.8 _cell.length_b 127.8 _cell.length_c 68.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 A SG CYS 146 A CYS 146 1_555 C C6 UMP . A UMP 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? covale ? covale3 B C CXM 1 B CXM 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 B SG CYS 146 B CYS 146 1_555 E C6 UMP . B UMP 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? # _chem_comp.formula 'C20 H21 N9 O4' _chem_comp.formula_weight 451.439 _chem_comp.id LY3 _chem_comp.mon_nstd_flag . _chem_comp.name '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-4-(2H-TETRAZOL-5-YL)-BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LY341770 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 LY3 sing 216 n y N1 C4 LY3 sing 217 n y N1 HN1 LY3 sing 218 n n C1 N2 LY3 doub 219 n y C1 N4 LY3 sing 220 n n N2 C2 LY3 sing 221 n y C2 C3 LY3 doub 222 n y C2 N3 LY3 sing 223 n y C3 C4 LY3 sing 224 n y C3 C6 LY3 sing 225 n y C4 O1 LY3 doub 226 n n N3 C5 LY3 sing 227 n y N3 HN3 LY3 sing 228 n n C5 C6 LY3 doub 229 n y C5 HC5 LY3 sing 230 n n C6 C7 LY3 sing 231 n n C7 C8 LY3 sing 232 n n C7 HC71 LY3 sing 233 n n C7 HC72 LY3 sing 234 n n C8 C9 LY3 sing 235 n n C8 HC81 LY3 sing 236 n n C8 HC82 LY3 sing 237 n n C9 C10 LY3 doub 238 n y C9 C14 LY3 sing 239 n y C10 C11 LY3 sing 240 n y C10 H10 LY3 sing 241 n n C11 C12 LY3 doub 242 n y C11 H11 LY3 sing 243 n n C12 C13 LY3 sing 244 n y C12 C15 LY3 sing 245 n n C13 C14 LY3 doub 246 n y C13 H13 LY3 sing 247 n n C14 H14 LY3 sing 248 n n C15 N5 LY3 sing 249 n n C15 O4 LY3 doub 250 n n N4 HN41 LY3 sing 251 n n N4 HN42 LY3 sing 252 n n C16 C17 LY3 sing 253 n n C16 C18 LY3 sing 254 n n C16 N5 LY3 sing 255 n n C16 H16 LY3 sing 256 n n C17 C19 LY3 sing 257 n n C17 H171 LY3 sing 258 n n C17 H172 LY3 sing 259 n n C18 O2 LY3 doub 260 n n C18 O3 LY3 sing 261 n n O3 HO3 LY3 sing 262 n n N5 HN5 LY3 sing 263 n n C19 C20 LY3 sing 264 n n C19 H191 LY3 sing 265 n n C19 H192 LY3 sing 266 n n C20 N6 LY3 doub 267 n y C20 N9 LY3 sing 268 n y N6 N7 LY3 sing 269 n y N7 N8 LY3 sing 270 n y N7 HN7 LY3 sing 271 n n N8 N9 LY3 doub 272 n y # _atom_sites.entry_id 1JTQ _atom_sites.fract_transf_matrix[1][1] 0.007825 _atom_sites.fract_transf_matrix[1][2] 0.004518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 565 565 UMP DUM . D 3 LY3 A 1 501 566 LY3 L34 . E 2 UMP B 1 565 565 UMP DUM . F 3 LY3 B 1 502 566 LY3 L34 . G 4 HOH A 1 601 601 HOH WAT . G 4 HOH A 2 602 602 HOH WAT . G 4 HOH A 3 603 603 HOH WAT . G 4 HOH A 4 604 604 HOH WAT . G 4 HOH A 5 606 606 HOH WAT . G 4 HOH A 6 608 608 HOH WAT . G 4 HOH A 7 610 610 HOH WAT . G 4 HOH A 8 612 612 HOH WAT . G 4 HOH A 9 613 613 HOH WAT . G 4 HOH A 10 614 614 HOH WAT . G 4 HOH A 11 617 617 HOH WAT . G 4 HOH A 12 618 618 HOH WAT . G 4 HOH A 13 619 619 HOH WAT . G 4 HOH A 14 621 621 HOH WAT . G 4 HOH A 15 622 622 HOH WAT . G 4 HOH A 16 623 623 HOH WAT . G 4 HOH A 17 625 625 HOH WAT . G 4 HOH A 18 628 628 HOH WAT . G 4 HOH A 19 631 631 HOH WAT . G 4 HOH A 20 632 632 HOH WAT . G 4 HOH A 21 633 633 HOH WAT . G 4 HOH A 22 634 634 HOH WAT . G 4 HOH A 23 635 635 HOH WAT . G 4 HOH A 24 636 636 HOH WAT . G 4 HOH A 25 637 637 HOH WAT . G 4 HOH A 26 640 640 HOH WAT . G 4 HOH A 27 641 641 HOH WAT . G 4 HOH A 28 642 642 HOH WAT . G 4 HOH A 29 643 643 HOH WAT . G 4 HOH A 30 644 644 HOH WAT . G 4 HOH A 31 646 646 HOH WAT . G 4 HOH A 32 647 647 HOH WAT . G 4 HOH A 33 649 649 HOH WAT . G 4 HOH A 34 650 650 HOH WAT . G 4 HOH A 35 653 653 HOH WAT . G 4 HOH A 36 655 655 HOH WAT . G 4 HOH A 37 658 658 HOH WAT . G 4 HOH A 38 660 660 HOH WAT . G 4 HOH A 39 661 661 HOH WAT . G 4 HOH A 40 663 663 HOH WAT . G 4 HOH A 41 664 664 HOH WAT . G 4 HOH A 42 665 665 HOH WAT . G 4 HOH A 43 669 669 HOH WAT . G 4 HOH A 44 670 670 HOH WAT . G 4 HOH A 45 672 672 HOH WAT . G 4 HOH A 46 674 674 HOH WAT . G 4 HOH A 47 676 676 HOH WAT . G 4 HOH A 48 678 678 HOH WAT . G 4 HOH A 49 679 679 HOH WAT . G 4 HOH A 50 680 680 HOH WAT . G 4 HOH A 51 682 682 HOH WAT . G 4 HOH A 52 686 686 HOH WAT . G 4 HOH A 53 687 687 HOH WAT . G 4 HOH A 54 688 688 HOH WAT . G 4 HOH A 55 689 689 HOH WAT . G 4 HOH A 56 690 690 HOH WAT . G 4 HOH A 57 691 691 HOH WAT . G 4 HOH A 58 693 693 HOH WAT . G 4 HOH A 59 694 694 HOH WAT . G 4 HOH A 60 695 695 HOH WAT . G 4 HOH A 61 696 696 HOH WAT . G 4 HOH A 62 698 698 HOH WAT . G 4 HOH A 63 699 699 HOH WAT . G 4 HOH A 64 700 700 HOH WAT . G 4 HOH A 65 701 701 HOH WAT . H 4 HOH B 1 605 605 HOH WAT . H 4 HOH B 2 607 607 HOH WAT . H 4 HOH B 3 609 609 HOH WAT . H 4 HOH B 4 611 611 HOH WAT . H 4 HOH B 5 615 615 HOH WAT . H 4 HOH B 6 616 616 HOH WAT . H 4 HOH B 7 620 620 HOH WAT . H 4 HOH B 8 624 624 HOH WAT . H 4 HOH B 9 626 626 HOH WAT . H 4 HOH B 10 627 627 HOH WAT . H 4 HOH B 11 629 629 HOH WAT . H 4 HOH B 12 630 630 HOH WAT . H 4 HOH B 13 638 638 HOH WAT . H 4 HOH B 14 639 639 HOH WAT . H 4 HOH B 15 645 645 HOH WAT . H 4 HOH B 16 648 648 HOH WAT . H 4 HOH B 17 651 651 HOH WAT . H 4 HOH B 18 652 652 HOH WAT . H 4 HOH B 19 654 654 HOH WAT . H 4 HOH B 20 656 656 HOH WAT . H 4 HOH B 21 657 657 HOH WAT . H 4 HOH B 22 659 659 HOH WAT . H 4 HOH B 23 662 662 HOH WAT . H 4 HOH B 24 666 666 HOH WAT . H 4 HOH B 25 667 667 HOH WAT . H 4 HOH B 26 668 668 HOH WAT . H 4 HOH B 27 671 671 HOH WAT . H 4 HOH B 28 673 673 HOH WAT . H 4 HOH B 29 675 675 HOH WAT . H 4 HOH B 30 677 677 HOH WAT . H 4 HOH B 31 681 681 HOH WAT . H 4 HOH B 32 683 683 HOH WAT . H 4 HOH B 33 684 684 HOH WAT . H 4 HOH B 34 685 685 HOH WAT . H 4 HOH B 35 692 692 HOH WAT . H 4 HOH B 36 697 697 HOH WAT . H 4 HOH B 37 702 702 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LY3 . . . D 3 13.879 19.236 32.603 1 41.17 ? N1 LY3 501 A 1 HETATM 2 C C1 LY3 . . . D 3 13.038 19.316 31.544 1 43.53 ? C1 LY3 501 A 1 HETATM 3 N N2 LY3 . . . D 3 13.136 18.531 30.541 1 43.14 ? N2 LY3 501 A 1 HETATM 4 C C2 LY3 . . . D 3 14.239 17.557 30.534 1 41.5 ? C2 LY3 501 A 1 HETATM 5 C C3 LY3 . . . D 3 15.059 17.438 31.573 1 41.4 ? C3 LY3 501 A 1 HETATM 6 C C4 LY3 . . . D 3 14.955 18.388 32.743 1 42.17 ? C4 LY3 501 A 1 HETATM 7 N N3 LY3 . . . D 3 14.64 16.522 29.578 1 40.6 ? N3 LY3 501 A 1 HETATM 8 C C5 LY3 . . . D 3 15.802 15.832 30.138 1 39.11 ? C5 LY3 501 A 1 HETATM 9 C C6 LY3 . . . D 3 16.097 16.378 31.327 1 39.91 ? C6 LY3 501 A 1 HETATM 10 C C7 LY3 . . . D 3 17.194 15.988 32.284 1 39.2 ? C7 LY3 501 A 1 HETATM 11 C C8 LY3 . . . D 3 17.184 14.481 32.554 1 38.26 ? C8 LY3 501 A 1 HETATM 12 C C9 LY3 . . . D 3 16.115 14.18 33.569 1 42.49 ? C9 LY3 501 A 1 HETATM 13 C C10 LY3 . . . D 3 16.301 14.448 34.966 1 43.65 ? C10 LY3 501 A 1 HETATM 14 C C11 LY3 . . . D 3 15.254 14.151 35.906 1 48.46 ? C11 LY3 501 A 1 HETATM 15 C C12 LY3 . . . D 3 14.032 13.589 35.422 1 52.01 ? C12 LY3 501 A 1 HETATM 16 C C13 LY3 . . . D 3 13.869 13.33 34.037 1 49.3 ? C13 LY3 501 A 1 HETATM 17 C C14 LY3 . . . D 3 14.9 13.624 33.122 1 45.37 ? C14 LY3 501 A 1 HETATM 18 C C15 LY3 . . . D 3 12.856 13.222 36.329 1 57.17 ? C15 LY3 501 A 1 HETATM 19 O O1 LY3 . . . D 3 15.672 18.353 33.71 1 43.62 ? O1 LY3 501 A 1 HETATM 20 N N4 LY3 . . . D 3 11.984 20.326 31.632 1 46.55 ? N4 LY3 501 A 1 HETATM 21 C C16 LY3 . . . D 3 11.986 12.441 38.409 1 69.85 ? C16 LY3 501 A 1 HETATM 22 C C17 LY3 . . . D 3 11.647 10.945 38.307 1 70.93 ? C17 LY3 501 A 1 HETATM 23 C C18 LY3 . . . D 3 12.12 12.824 39.848 1 69.75 ? C18 LY3 501 A 1 HETATM 24 O O2 LY3 . . . D 3 13.552 13.004 40.203 1 63.75 ? O2 LY3 501 A 1 HETATM 25 O O3 LY3 . . . D 3 11.195 12.894 40.621 1 73.62 ? O3 LY3 501 A 1 HETATM 26 N N5 LY3 . . . D 3 13.145 12.796 37.601 1 61.68 ? N5 LY3 501 A 1 HETATM 27 O O4 LY3 . . . D 3 11.713 13.283 35.94 1 57.23 ? O4 LY3 501 A 1 HETATM 28 C C19 LY3 . . . D 3 12.027 10.182 39.583 1 71.63 ? C19 LY3 501 A 1 HETATM 29 C C20 LY3 . . . D 3 12.782 8.969 39.178 1 70.34 ? C20 LY3 501 A 1 HETATM 30 N N6 LY3 . . . D 3 13.768 8.994 38.122 1 70.61 ? N6 LY3 501 A 1 HETATM 31 N N7 LY3 . . . D 3 14.115 7.791 38.142 1 72.52 ? N7 LY3 501 A 1 HETATM 32 N N8 LY3 . . . D 3 13.487 7.007 39.058 1 70.17 ? N8 LY3 501 A 1 HETATM 33 N N9 LY3 . . . D 3 12.634 7.84 39.699 1 69.94 ? N9 LY3 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #