data_1JTX # _model_server_result.job_id sYo2uldfqVLQ7NRGLVusdg _model_server_result.datetime_utc '2024-10-15 00:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jtx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":200}' # _entry.id 1JTX # _exptl.entry_id 1JTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.526 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CRYSTAL VIOLET' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JTX _cell.length_a 172.9 _cell.length_b 172.9 _cell.length_c 95.1 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,P,Q,R,S,T,U,V,W,DA,FA 1 1 B,D,K,L,M,N,O,X,Y,Z,AA,BA,CA,EA,GA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 N3 1' _chem_comp.formula_weight 372.526 _chem_comp.id CVI _chem_comp.mon_nstd_flag . _chem_comp.name 'CRYSTAL VIOLET' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVI doub 70 n n C1 C8 CVI sing 71 n n C1 C14 CVI sing 72 n n C2 C3 CVI sing 73 n n C2 C7 CVI sing 74 n n C3 C4 CVI doub 75 n n C3 H31 CVI sing 76 n n C4 C5 CVI sing 77 n n C4 H41 CVI sing 78 n n C5 C6 CVI sing 79 n n C5 N1 CVI doub 80 n n C6 C7 CVI doub 81 n n C6 H61 CVI sing 82 n n C7 H71 CVI sing 83 n n C8 C9 CVI doub 84 n y C8 C13 CVI sing 85 n y C9 C10 CVI sing 86 n y C9 H91 CVI sing 87 n n C10 C11 CVI doub 88 n y C10 H101 CVI sing 89 n n C11 C12 CVI sing 90 n y C11 N2 CVI sing 91 n n C12 C13 CVI doub 92 n y C12 H121 CVI sing 93 n n C13 H131 CVI sing 94 n n C14 C15 CVI doub 95 n y C14 C19 CVI sing 96 n y C15 C16 CVI sing 97 n y C15 H151 CVI sing 98 n n C16 C17 CVI doub 99 n y C16 H161 CVI sing 100 n n C17 C18 CVI sing 101 n y C17 N3 CVI sing 102 n n C18 C19 CVI doub 103 n y C18 H181 CVI sing 104 n n C19 H191 CVI sing 105 n n C20 N1 CVI sing 106 n n C20 H201 CVI sing 107 n n C20 H202 CVI sing 108 n n C20 H203 CVI sing 109 n n C21 N1 CVI sing 110 n n C21 H211 CVI sing 111 n n C21 H212 CVI sing 112 n n C21 H213 CVI sing 113 n n C22 N2 CVI sing 114 n n C22 H221 CVI sing 115 n n C22 H222 CVI sing 116 n n C22 H223 CVI sing 117 n n C23 N2 CVI sing 118 n n C23 H231 CVI sing 119 n n C23 H232 CVI sing 120 n n C23 H233 CVI sing 121 n n C24 N3 CVI sing 122 n n C24 H241 CVI sing 123 n n C24 H242 CVI sing 124 n n C24 H243 CVI sing 125 n n C25 N3 CVI sing 126 n n C25 H251 CVI sing 127 n n C25 H252 CVI sing 128 n n C25 H253 CVI sing 129 n n # _atom_sites.entry_id 1JTX _atom_sites.fract_transf_matrix[1][1] 0.005784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 600 599 SO4 SO4 . F 2 SO4 B 1 219 19 SO4 SO4 . G 2 SO4 B 1 199 199 SO4 SO4 . H 2 SO4 B 1 499 499 SO4 SO4 . I 2 SO4 B 1 700 699 SO4 SO4 . J 2 SO4 B 1 999 999 SO4 SO4 . K 2 SO4 D 1 899 899 SO4 SO4 . L 2 SO4 D 1 900 69 SO4 SO4 . M 2 SO4 D 1 901 69 SO4 SO4 . N 2 SO4 D 1 902 79 SO4 SO4 . O 2 SO4 D 1 779 779 SO4 SO4 . P 2 SO4 A 1 599 599 SO4 SO4 . Q 2 SO4 A 1 299 299 SO4 SO4 . R 2 SO4 A 1 699 699 SO4 SO4 . S 2 SO4 A 1 799 799 SO4 SO4 . T 2 SO4 A 1 800 799 SO4 SO4 . U 2 SO4 A 1 801 799 SO4 SO4 . V 2 SO4 A 1 802 79 SO4 SO4 . W 3 CVI A 1 200 0 CVI CVI . X 2 SO4 E 1 900 899 SO4 SO4 . Y 2 SO4 E 1 249 49 SO4 SO4 . Z 2 SO4 E 1 399 399 SO4 SO4 . AA 2 SO4 E 1 901 89 SO4 SO4 . BA 2 SO4 E 1 239 39 SO4 SO4 . CA 2 SO4 E 1 649 649 SO4 SO4 . DA 4 HOH B 1 1000 19 HOH WAT . DA 4 HOH B 2 1001 22 HOH WAT . DA 4 HOH B 3 1002 28 HOH WAT . DA 4 HOH B 4 1003 34 HOH WAT . DA 4 HOH B 5 1004 35 HOH WAT . DA 4 HOH B 6 1005 36 HOH WAT . DA 4 HOH B 7 1006 37 HOH WAT . DA 4 HOH B 8 1007 38 HOH WAT . DA 4 HOH B 9 1008 41 HOH WAT . DA 4 HOH B 10 1009 46 HOH WAT . DA 4 HOH B 11 1010 49 HOH WAT . DA 4 HOH B 12 1011 64 HOH WAT . EA 4 HOH D 1 903 15 HOH WAT . EA 4 HOH D 2 904 17 HOH WAT . EA 4 HOH D 3 905 18 HOH WAT . EA 4 HOH D 4 906 42 HOH WAT . EA 4 HOH D 5 907 43 HOH WAT . EA 4 HOH D 6 908 44 HOH WAT . EA 4 HOH D 7 909 47 HOH WAT . EA 4 HOH D 8 910 50 HOH WAT . EA 4 HOH D 9 911 59 HOH WAT . EA 4 HOH D 10 912 60 HOH WAT . EA 4 HOH D 11 913 62 HOH WAT . EA 4 HOH D 12 914 63 HOH WAT . EA 4 HOH D 13 915 66 HOH WAT . FA 4 HOH A 1 803 10 HOH WAT . FA 4 HOH A 2 804 11 HOH WAT . FA 4 HOH A 3 805 14 HOH WAT . FA 4 HOH A 4 806 16 HOH WAT . FA 4 HOH A 5 807 20 HOH WAT . FA 4 HOH A 6 808 21 HOH WAT . FA 4 HOH A 7 809 23 HOH WAT . FA 4 HOH A 8 810 24 HOH WAT . FA 4 HOH A 9 811 25 HOH WAT . FA 4 HOH A 10 812 26 HOH WAT . FA 4 HOH A 11 813 27 HOH WAT . FA 4 HOH A 12 814 29 HOH WAT . FA 4 HOH A 13 815 30 HOH WAT . FA 4 HOH A 14 816 39 HOH WAT . FA 4 HOH A 15 817 40 HOH WAT . FA 4 HOH A 16 818 45 HOH WAT . FA 4 HOH A 17 819 51 HOH WAT . FA 4 HOH A 18 820 52 HOH WAT . FA 4 HOH A 19 821 53 HOH WAT . FA 4 HOH A 20 822 54 HOH WAT . FA 4 HOH A 21 823 55 HOH WAT . FA 4 HOH A 22 824 56 HOH WAT . FA 4 HOH A 23 825 57 HOH WAT . FA 4 HOH A 24 826 58 HOH WAT . FA 4 HOH A 25 827 65 HOH WAT . FA 4 HOH A 26 828 67 HOH WAT . FA 4 HOH A 27 829 68 HOH WAT . GA 4 HOH E 1 902 1 HOH WAT . GA 4 HOH E 2 903 2 HOH WAT . GA 4 HOH E 3 904 3 HOH WAT . GA 4 HOH E 4 905 4 HOH WAT . GA 4 HOH E 5 906 6 HOH WAT . GA 4 HOH E 6 907 9 HOH WAT . GA 4 HOH E 7 908 13 HOH WAT . GA 4 HOH E 8 909 31 HOH WAT . GA 4 HOH E 9 910 32 HOH WAT . GA 4 HOH E 10 911 33 HOH WAT . GA 4 HOH E 11 912 48 HOH WAT . GA 4 HOH E 12 913 61 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CVI . . . W 3 -70.177 -47.056 5.257 1 97.39 ? C1 CVI 200 A 1 HETATM 2 C C2 CVI . . . W 3 -68.877 -46.891 4.535 1 98.61 ? C2 CVI 200 A 1 HETATM 3 C C3 CVI . . . W 3 -68.684 -45.89 3.517 1 100.7 ? C3 CVI 200 A 1 HETATM 4 C C4 CVI . . . W 3 -67.444 -45.708 2.867 1 101.76 ? C4 CVI 200 A 1 HETATM 5 C C5 CVI . . . W 3 -66.294 -46.543 3.21 1 99.37 ? C5 CVI 200 A 1 HETATM 6 C C6 CVI . . . W 3 -66.493 -47.564 4.23 1 97.02 ? C6 CVI 200 A 1 HETATM 7 C C7 CVI . . . W 3 -67.723 -47.716 4.851 1 97.91 ? C7 CVI 200 A 1 HETATM 8 C C8 CVI . . . W 3 -70.839 -48.346 5.397 1 97.17 ? C8 CVI 200 A 1 HETATM 9 C C9 CVI . . . W 3 -71.532 -48.983 4.316 1 96.51 ? C9 CVI 200 A 1 HETATM 10 C C10 CVI . . . W 3 -72.173 -50.222 4.495 1 97.46 ? C10 CVI 200 A 1 HETATM 11 C C11 CVI . . . W 3 -72.159 -50.918 5.802 1 96.15 ? C11 CVI 200 A 1 HETATM 12 C C12 CVI . . . W 3 -71.461 -50.268 6.867 1 95.59 ? C12 CVI 200 A 1 HETATM 13 C C13 CVI . . . W 3 -70.835 -49.047 6.665 1 97.18 ? C13 CVI 200 A 1 HETATM 14 C C14 CVI . . . W 3 -70.773 -45.897 5.973 1 94.9 ? C14 CVI 200 A 1 HETATM 15 C C15 CVI . . . W 3 -72.211 -45.801 6.117 1 94.07 ? C15 CVI 200 A 1 HETATM 16 C C16 CVI . . . W 3 -72.82 -44.754 6.801 1 92.08 ? C16 CVI 200 A 1 HETATM 17 C C17 CVI . . . W 3 -72.057 -43.713 7.401 1 88.75 ? C17 CVI 200 A 1 HETATM 18 C C18 CVI . . . W 3 -70.619 -43.778 7.268 1 91.13 ? C18 CVI 200 A 1 HETATM 19 C C19 CVI . . . W 3 -69.997 -44.832 6.581 1 93.34 ? C19 CVI 200 A 1 HETATM 20 C C20 CVI . . . W 3 -63.856 -47.092 2.963 1 99.86 ? C20 CVI 200 A 1 HETATM 21 C C21 CVI . . . W 3 -64.868 -45.3 1.546 1 95.62 ? C21 CVI 200 A 1 HETATM 22 C C22 CVI . . . W 3 -72.798 -52.832 7.313 1 90.41 ? C22 CVI 200 A 1 HETATM 23 C C23 CVI . . . W 3 -73.528 -52.836 4.957 1 97.06 ? C23 CVI 200 A 1 HETATM 24 C C24 CVI . . . W 3 -72.189 -41.334 8.062 1 84.1 ? C24 CVI 200 A 1 HETATM 25 C C25 CVI . . . W 3 -73.869 -42.902 8.868 1 85.15 ? C25 CVI 200 A 1 HETATM 26 N N1 CVI . . . W 3 -65.046 -46.337 2.573 1 99.48 ? N1 CVI 200 A 1 HETATM 27 N N2 CVI . . . W 3 -72.796 -52.135 6.002 1 96.13 ? N2 CVI 200 A 1 HETATM 28 N N3 CVI . . . W 3 -72.666 -42.695 8.074 1 85.6 ? N3 CVI 200 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 555 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #