data_1JU6
#
_model_server_result.job_id            ATeLWCcQV2b2ZL327x9mwQ 
_model_server_result.datetime_utc      '2024-11-16 18:59:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ju6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":315}' 
#
_entry.id    1JU6 
#
_exptl.entry_id    1JU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         71.67 
_cell.angle_beta          85.72 
_cell.angle_gamma         75.11 
_cell.entry_id            1JU6 
_cell.length_a            68.138 
_cell.length_b            69.633 
_cell.length_c            73.958 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,N,O 1 1 
C,D,J,K,L,M,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 K N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 195 A CYS 195 1_555 F C6 UMP . A UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
covale ? covale2 B SG CYS 195 B CYS 195 1_555 H C6 UMP . B UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale3 C SG CYS 195 C CYS 195 1_555 J C6 UMP . C UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
covale ? covale4 D SG CYS 195 D CYS 195 1_555 L C6 UMP . D UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
#
_chem_comp.formula           'C20 H21 N5 O6' 
_chem_comp.formula_weight    427.411 
_chem_comp.id                LYA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LY231514 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LYA doub 194 n y 
C1 C6 LYA sing 195 n y 
C1 C7 LYA sing 196 n n 
C2 C3 LYA sing 197 n y 
C2 HC2 LYA sing 198 n n 
C3 C4 LYA doub 199 n y 
C3 HC3 LYA sing 200 n n 
C4 C5 LYA sing 201 n y 
C4 C20 LYA sing 202 n n 
C5 C6 LYA doub 203 n y 
C5 HC5 LYA sing 204 n n 
C6 HC6 LYA sing 205 n n 
C7 C8 LYA sing 206 n n 
C7 HC71 LYA sing 207 n n 
C7 HC72 LYA sing 208 n n 
C8 C9 LYA sing 209 n n 
C8 HC81 LYA sing 210 n n 
C8 HC82 LYA sing 211 n n 
C9 C10 LYA doub 212 n y 
C9 C13 LYA sing 213 n y 
C10 N11 LYA sing 214 n y 
C10 H10 LYA sing 215 n n 
N11 C12 LYA sing 216 n y 
N11 H11 LYA sing 217 n n 
C12 C13 LYA doub 218 n y 
C12 N18 LYA sing 219 n y 
C13 C14 LYA sing 220 n y 
C14 O15 LYA doub 221 n n 
C14 N16 LYA sing 222 n y 
N16 C17 LYA doub 223 n y 
C17 N18 LYA sing 224 n y 
C17 N19 LYA sing 225 n n 
N18 H18 LYA sing 226 n n 
N19 H191 LYA sing 227 n n 
N19 H192 LYA sing 228 n n 
C20 O21 LYA doub 229 n n 
C20 N22 LYA sing 230 n n 
N22 C23 LYA sing 231 n n 
N22 H22 LYA sing 232 n n 
C23 C24 LYA sing 233 n n 
C23 C29 LYA sing 234 n n 
C23 H23 LYA sing 235 n n 
C24 C25 LYA sing 236 n n 
C24 H241 LYA sing 237 n n 
C24 H242 LYA sing 238 n n 
C25 C26 LYA sing 239 n n 
C25 H251 LYA sing 240 n n 
C25 H252 LYA sing 241 n n 
C26 O27 LYA doub 242 n n 
C26 O28 LYA sing 243 n n 
O28 H28 LYA sing 244 n n 
C29 O30 LYA doub 245 n n 
C29 O31 LYA sing 246 n n 
O31 H31 LYA sing 247 n n 
#
_atom_sites.entry_id                     1JU6 
_atom_sites.fract_transf_matrix[1][1]    0.014676 
_atom_sites.fract_transf_matrix[1][2]    -0.003901 
_atom_sites.fract_transf_matrix[1][3]    0.000102 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01486 
_atom_sites.fract_transf_matrix[2][3]    -0.004783 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 316 316 PO4 PO4 . 
F 3 UMP A 1 314 314 UMP DUM . 
G 4 LYA A 1 317 315 LYA LYA . 
H 3 UMP B 1 314 314 UMP DUM . 
I 4 LYA B 1 315 315 LYA LYA . 
J 3 UMP C 1 314 314 UMP DUM . 
K 4 LYA C 1 315 315 LYA LYA . 
L 3 UMP D 1 314 314 UMP DUM . 
M 4 LYA D 1 315 315 LYA LYA . 
N 5 HOH A 1 401 318 HOH WAT . 
N 5 HOH A 2 402 319 HOH WAT . 
N 5 HOH A 3 403 320 HOH WAT . 
N 5 HOH A 4 404 321 HOH WAT . 
N 5 HOH A 5 405 322 HOH WAT . 
N 5 HOH A 6 406 324 HOH WAT . 
N 5 HOH A 7 407 325 HOH WAT . 
N 5 HOH A 8 408 326 HOH WAT . 
N 5 HOH A 9 409 328 HOH WAT . 
N 5 HOH A 10 410 329 HOH WAT . 
N 5 HOH A 11 411 330 HOH WAT . 
N 5 HOH A 12 412 331 HOH WAT . 
O 5 HOH B 1 413 318 HOH WAT . 
O 5 HOH B 2 414 319 HOH WAT . 
O 5 HOH B 3 415 320 HOH WAT . 
O 5 HOH B 4 416 321 HOH WAT . 
O 5 HOH B 5 417 322 HOH WAT . 
O 5 HOH B 6 418 324 HOH WAT . 
O 5 HOH B 7 419 325 HOH WAT . 
O 5 HOH B 8 420 326 HOH WAT . 
O 5 HOH B 9 421 328 HOH WAT . 
O 5 HOH B 10 422 329 HOH WAT . 
O 5 HOH B 11 423 330 HOH WAT . 
O 5 HOH B 12 424 331 HOH WAT . 
P 5 HOH C 1 425 318 HOH WAT . 
P 5 HOH C 2 426 319 HOH WAT . 
P 5 HOH C 3 427 320 HOH WAT . 
P 5 HOH C 4 428 321 HOH WAT . 
P 5 HOH C 5 429 322 HOH WAT . 
P 5 HOH C 6 430 324 HOH WAT . 
P 5 HOH C 7 431 325 HOH WAT . 
P 5 HOH C 8 432 326 HOH WAT . 
P 5 HOH C 9 433 328 HOH WAT . 
P 5 HOH C 10 434 329 HOH WAT . 
P 5 HOH C 11 435 330 HOH WAT . 
P 5 HOH C 12 436 331 HOH WAT . 
P 5 HOH C 13 440 321 HOH WAT . 
Q 5 HOH D 1 437 318 HOH WAT . 
Q 5 HOH D 2 438 319 HOH WAT . 
Q 5 HOH D 3 439 320 HOH WAT . 
Q 5 HOH D 4 441 322 HOH WAT . 
Q 5 HOH D 5 442 324 HOH WAT . 
Q 5 HOH D 6 443 325 HOH WAT . 
Q 5 HOH D 7 444 326 HOH WAT . 
Q 5 HOH D 8 445 328 HOH WAT . 
Q 5 HOH D 9 446 329 HOH WAT . 
Q 5 HOH D 10 447 330 HOH WAT . 
Q 5 HOH D 11 448 331 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LYA . . . I 4 -18.582 -6.276 6.112 1 34.33 ? C1 LYA 315 B 1 
HETATM 2 C C2 LYA . . . I 4 -18.04 -7.32 6.91 1 35.43 ? C2 LYA 315 B 1 
HETATM 3 C C3 LYA . . . I 4 -18.633 -7.669 8.161 1 37.87 ? C3 LYA 315 B 1 
HETATM 4 C C4 LYA . . . I 4 -19.785 -6.983 8.651 1 37.36 ? C4 LYA 315 B 1 
HETATM 5 C C5 LYA . . . I 4 -20.311 -5.929 7.831 1 35.79 ? C5 LYA 315 B 1 
HETATM 6 C C6 LYA . . . I 4 -19.725 -5.58 6.585 1 36.03 ? C6 LYA 315 B 1 
HETATM 7 C C7 LYA . . . I 4 -17.934 -5.92 4.748 1 33.71 ? C7 LYA 315 B 1 
HETATM 8 C C8 LYA . . . I 4 -16.956 -4.707 4.767 1 30.77 ? C8 LYA 315 B 1 
HETATM 9 C C9 LYA . . . I 4 -17.663 -3.35 4.879 1 31.53 ? C9 LYA 315 B 1 
HETATM 10 C C10 LYA . . . I 4 -18.466 -2.752 3.908 1 32.63 ? C10 LYA 315 B 1 
HETATM 11 N N11 LYA . . . I 4 -18.953 -1.516 4.355 1 33.55 ? N11 LYA 315 B 1 
HETATM 12 C C12 LYA . . . I 4 -18.452 -1.333 5.624 1 32.35 ? C12 LYA 315 B 1 
HETATM 13 C C13 LYA . . . I 4 -17.657 -2.464 5.938 1 31.03 ? C13 LYA 315 B 1 
HETATM 14 C C14 LYA . . . I 4 -16.963 -2.515 7.327 1 30.87 ? C14 LYA 315 B 1 
HETATM 15 O O15 LYA . . . I 4 -16.252 -3.429 7.716 1 31.35 ? O15 LYA 315 B 1 
HETATM 16 N N16 LYA . . . I 4 -17.183 -1.452 8.143 1 31.72 ? N16 LYA 315 B 1 
HETATM 17 C C17 LYA . . . I 4 -18.011 -0.329 7.761 1 35.44 ? C17 LYA 315 B 1 
HETATM 18 N N18 LYA . . . I 4 -18.588 -0.281 6.604 1 36.22 ? N18 LYA 315 B 1 
HETATM 19 N N19 LYA . . . I 4 -18.185 0.698 8.646 1 36.92 ? N19 LYA 315 B 1 
HETATM 20 C C20 LYA . . . I 4 -20.492 -7.309 9.98 1 39.76 ? C20 LYA 315 B 1 
HETATM 21 O O21 LYA . . . I 4 -21.485 -6.667 10.322 1 41.78 ? O21 LYA 315 B 1 
HETATM 22 N N22 LYA . . . I 4 -20.012 -8.33 10.763 1 43.01 ? N22 LYA 315 B 1 
HETATM 23 C C23 LYA . . . I 4 -20.584 -8.807 12.079 1 48.06 ? C23 LYA 315 B 1 
HETATM 24 C C24 LYA . . . I 4 -21.632 -9.961 11.964 1 50.77 ? C24 LYA 315 B 1 
HETATM 25 C C25 LYA . . . I 4 -22.423 -10.01 10.622 1 52.23 ? C25 LYA 315 B 1 
HETATM 26 C C26 LYA . . . I 4 -23.464 -11.108 10.401 1 55.31 ? C26 LYA 315 B 1 
HETATM 27 O O27 LYA . . . I 4 -23.761 -11.428 9.229 1 55.81 ? O27 LYA 315 B 1 
HETATM 28 O O28 LYA . . . I 4 -23.995 -11.665 11.391 1 56.6 ? O28 LYA 315 B 1 
HETATM 29 C C29 LYA . . . I 4 -19.4 -9.136 13.044 1 49.99 ? C29 LYA 315 B 1 
HETATM 30 O O30 LYA . . . I 4 -19.561 -9.153 14.286 1 53.2 ? O30 LYA 315 B 1 
HETATM 31 O O31 LYA . . . I 4 -18.273 -9.389 12.538 1 51.35 ? O31 LYA 315 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#