data_1JUJ
#
_model_server_result.job_id            iE9b7OL-TvCL7hf8AkrRQQ 
_model_server_result.datetime_utc      '2024-11-23 09:04:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1juj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":315}' 
#
_entry.id    1JUJ 
#
_exptl.entry_id    1JUJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.7 
_cell.angle_gamma         90 
_cell.entry_id            1JUJ 
_cell.length_a            138.14 
_cell.length_b            98.14 
_cell.length_c            111.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 195 A CYS 195 1_555 E C6 UMP . A UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
covale ? covale2 B SG CYS 195 B CYS 195 1_555 G C6 UMP . B UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
covale ? covale3 C SG CYS 195 C CYS 195 1_555 I C6 UMP . C UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
covale ? covale4 D SG CYS 195 D CYS 195 1_555 K C6 UMP . D UMP 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
#
_chem_comp.formula           'C20 H21 N5 O6' 
_chem_comp.formula_weight    427.411 
_chem_comp.id                LYA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LY231514 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LYA doub 192 n y 
C1 C6 LYA sing 193 n y 
C1 C7 LYA sing 194 n n 
C2 C3 LYA sing 195 n y 
C2 HC2 LYA sing 196 n n 
C3 C4 LYA doub 197 n y 
C3 HC3 LYA sing 198 n n 
C4 C5 LYA sing 199 n y 
C4 C20 LYA sing 200 n n 
C5 C6 LYA doub 201 n y 
C5 HC5 LYA sing 202 n n 
C6 HC6 LYA sing 203 n n 
C7 C8 LYA sing 204 n n 
C7 HC71 LYA sing 205 n n 
C7 HC72 LYA sing 206 n n 
C8 C9 LYA sing 207 n n 
C8 HC81 LYA sing 208 n n 
C8 HC82 LYA sing 209 n n 
C9 C10 LYA doub 210 n y 
C9 C13 LYA sing 211 n y 
C10 N11 LYA sing 212 n y 
C10 H10 LYA sing 213 n n 
N11 C12 LYA sing 214 n y 
N11 H11 LYA sing 215 n n 
C12 C13 LYA doub 216 n y 
C12 N18 LYA sing 217 n y 
C13 C14 LYA sing 218 n y 
C14 O15 LYA doub 219 n n 
C14 N16 LYA sing 220 n y 
N16 C17 LYA doub 221 n y 
C17 N18 LYA sing 222 n y 
C17 N19 LYA sing 223 n n 
N18 H18 LYA sing 224 n n 
N19 H191 LYA sing 225 n n 
N19 H192 LYA sing 226 n n 
C20 O21 LYA doub 227 n n 
C20 N22 LYA sing 228 n n 
N22 C23 LYA sing 229 n n 
N22 H22 LYA sing 230 n n 
C23 C24 LYA sing 231 n n 
C23 C29 LYA sing 232 n n 
C23 H23 LYA sing 233 n n 
C24 C25 LYA sing 234 n n 
C24 H241 LYA sing 235 n n 
C24 H242 LYA sing 236 n n 
C25 C26 LYA sing 237 n n 
C25 H251 LYA sing 238 n n 
C25 H252 LYA sing 239 n n 
C26 O27 LYA doub 240 n n 
C26 O28 LYA sing 241 n n 
O28 H28 LYA sing 242 n n 
C29 O30 LYA doub 243 n n 
C29 O31 LYA sing 244 n n 
O31 H31 LYA sing 245 n n 
#
_atom_sites.entry_id                     1JUJ 
_atom_sites.fract_transf_matrix[1][1]    0.007239 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002735 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 314 314 UMP UMP . 
F 3 LYA A 1 315 315 LYA LYA . 
G 2 UMP B 1 314 314 UMP UMP . 
H 3 LYA B 1 315 315 LYA LYA . 
I 2 UMP C 1 314 314 UMP UMP . 
J 3 LYA C 1 315 315 LYA LYA . 
K 2 UMP D 1 314 314 UMP UMP . 
L 3 LYA D 1 315 315 LYA LYA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LYA . . . L 3 0.378 -76.509 -28.464 1 61.72 ? C1 LYA 315 D 1 
HETATM 2 C C2 LYA . . . L 3 0.364 -75.674 -27.317 1 61.56 ? C2 LYA 315 D 1 
HETATM 3 C C3 LYA . . . L 3 -0.158 -76.161 -26.086 1 60.3 ? C3 LYA 315 D 1 
HETATM 4 C C4 LYA . . . L 3 -0.678 -77.505 -25.97 1 58.69 ? C4 LYA 315 D 1 
HETATM 5 C C5 LYA . . . L 3 -0.65 -78.311 -27.141 1 56.38 ? C5 LYA 315 D 1 
HETATM 6 C C6 LYA . . . L 3 -0.133 -77.832 -28.362 1 58.98 ? C6 LYA 315 D 1 
HETATM 7 C C7 LYA . . . L 3 0.956 -75.986 -29.8 1 67.55 ? C7 LYA 315 D 1 
HETATM 8 C C8 LYA . . . L 3 -0.074 -75.496 -30.858 1 75.65 ? C8 LYA 315 D 1 
HETATM 9 C C9 LYA . . . L 3 -0.597 -76.625 -31.746 1 83.41 ? C9 LYA 315 D 1 
HETATM 10 C C10 LYA . . . L 3 0.173 -77.442 -32.577 1 84.64 ? C10 LYA 315 D 1 
HETATM 11 N N11 LYA . . . L 3 -0.63 -78.376 -33.238 1 84.64 ? N11 LYA 315 D 1 
HETATM 12 C C12 LYA . . . L 3 -1.919 -78.148 -32.824 1 84.64 ? C12 LYA 315 D 1 
HETATM 13 C C13 LYA . . . L 3 -1.889 -77.064 -31.905 1 84.64 ? C13 LYA 315 D 1 
HETATM 14 C C14 LYA . . . L 3 -3.235 -76.591 -31.276 1 84.64 ? C14 LYA 315 D 1 
HETATM 15 O O15 LYA . . . L 3 -3.341 -75.675 -30.483 1 84.64 ? O15 LYA 315 D 1 
HETATM 16 N N16 LYA . . . L 3 -4.354 -77.27 -31.664 1 84.64 ? N16 LYA 315 D 1 
HETATM 17 C C17 LYA . . . L 3 -4.313 -78.368 -32.602 1 84.64 ? C17 LYA 315 D 1 
HETATM 18 N N18 LYA . . . L 3 -3.195 -78.767 -33.134 1 84.64 ? N18 LYA 315 D 1 
HETATM 19 N N19 LYA . . . L 3 -5.475 -78.998 -32.937 1 84.64 ? N19 LYA 315 D 1 
HETATM 20 C C20 LYA . . . L 3 -1.25 -78.127 -24.692 1 59.75 ? C20 LYA 315 D 1 
HETATM 21 O O21 LYA . . . L 3 -1.665 -79.29 -24.696 1 60.99 ? O21 LYA 315 D 1 
HETATM 22 N N22 LYA . . . L 3 -1.263 -77.369 -23.581 1 60.98 ? N22 LYA 315 D 1 
HETATM 23 C C23 LYA . . . L 3 -1.745 -77.778 -22.228 1 61.54 ? C23 LYA 315 D 1 
HETATM 24 C C24 LYA . . . L 3 -0.572 -78.093 -21.247 1 64.23 ? C24 LYA 315 D 1 
HETATM 25 C C25 LYA . . . L 3 0.292 -79.356 -21.571 1 67.94 ? C25 LYA 315 D 1 
HETATM 26 C C26 LYA . . . L 3 1.459 -79.673 -20.626 1 71.57 ? C26 LYA 315 D 1 
HETATM 27 O O27 LYA . . . L 3 1.31 -79.535 -19.388 1 75.15 ? O27 LYA 315 D 1 
HETATM 28 O O28 LYA . . . L 3 2.541 -80.066 -21.119 1 72.65 ? O28 LYA 315 D 1 
HETATM 29 C C29 LYA . . . L 3 -2.743 -76.682 -21.684 1 62.07 ? C29 LYA 315 D 1 
HETATM 30 O O30 LYA . . . L 3 -3.832 -76.99 -21.111 1 64.25 ? O30 LYA 315 D 1 
HETATM 31 O O31 LYA . . . L 3 -2.408 -75.468 -21.824 1 59.07 ? O31 LYA 315 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#