data_1JUM # _model_server_result.job_id Obwwwq1Qs8ftU0RxoMl3GQ _model_server_result.datetime_utc '2024-10-15 02:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":803}' # _entry.id 1JUM # _exptl.entry_id 1JUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BERBERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JUM _cell.length_a 174.3 _cell.length_b 174.3 _cell.length_c 96.3 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,N,O,P,Q,R,S,T,CA 1 1 B,D,J,K,L,M,U,V,W,X,Y,Z,AA,BA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 N O4 1' _chem_comp.formula_weight 336.361 _chem_comp.id BER _chem_comp.mon_nstd_flag . _chem_comp.name BERBERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BER sing 70 n y C1 N1 BER doub 71 n y C1 C3 BER sing 72 n y C2 C4 BER doub 73 n y C2 C5 BER sing 74 n y N1 C6 BER sing 75 n y N1 C7 BER sing 76 n n C3 C8 BER doub 77 n y C3 H31 BER sing 78 n n C4 C9 BER sing 79 n y C4 C10 BER sing 80 n n C5 C11 BER doub 81 n y C5 H51 BER sing 82 n n C6 C12 BER doub 83 n y C6 H61 BER sing 84 n n C7 C10 BER sing 85 n n C7 H71 BER sing 86 n n C7 H72 BER sing 87 n n C8 C12 BER sing 88 n y C8 C13 BER sing 89 n y C9 C14 BER doub 90 n y C9 H91 BER sing 91 n n C10 H101 BER sing 92 n n C10 H102 BER sing 93 n n C11 C14 BER sing 94 n y C11 O1 BER sing 95 n n C12 C15 BER sing 96 n y C13 C16 BER doub 97 n y C13 H131 BER sing 98 n n C14 O2 BER sing 99 n n O1 C17 BER sing 100 n n C15 C18 BER doub 101 n y C15 O3 BER sing 102 n n C16 C18 BER sing 103 n y C16 H161 BER sing 104 n n O2 C17 BER sing 105 n n C17 H171 BER sing 106 n n C17 H172 BER sing 107 n n C18 O4 BER sing 108 n n O3 C19 BER sing 109 n n O4 C20 BER sing 110 n n C19 H191 BER sing 111 n n C19 H192 BER sing 112 n n C19 H193 BER sing 113 n n C20 H201 BER sing 114 n n C20 H202 BER sing 115 n n C20 H203 BER sing 116 n n # _atom_sites.entry_id 1JUM _atom_sites.fract_transf_matrix[1][1] 0.005737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 195 19 SO4 SO4 . F 2 SO4 B 1 199 199 SO4 SO4 . G 2 SO4 B 1 499 499 SO4 SO4 . H 2 SO4 B 1 700 699 SO4 SO4 . I 2 SO4 B 1 1000 999 SO4 SO4 . J 2 SO4 D 1 899 899 SO4 SO4 . K 2 SO4 D 1 900 69 SO4 SO4 . L 2 SO4 D 1 999 999 SO4 SO4 . M 2 SO4 D 1 1000 79 SO4 SO4 . N 2 SO4 A 1 299 299 SO4 SO4 . O 2 SO4 A 1 699 699 SO4 SO4 . P 2 SO4 A 1 799 799 SO4 SO4 . Q 2 SO4 A 1 800 799 SO4 SO4 . R 2 SO4 A 1 801 799 SO4 SO4 . S 2 SO4 A 1 802 79 SO4 SO4 . T 3 BER A 1 803 1 BER BER . U 2 SO4 E 1 900 899 SO4 SO4 . V 2 SO4 E 1 901 49 SO4 SO4 . W 2 SO4 E 1 399 399 SO4 SO4 . X 2 SO4 E 1 902 89 SO4 SO4 . Y 2 SO4 E 1 903 39 SO4 SO4 . Z 2 SO4 E 1 639 639 SO4 SO4 . AA 2 SO4 E 1 579 579 SO4 SO4 . BA 4 HOH D 1 1001 44 HOH WAT . BA 4 HOH D 2 1002 142 HOH WAT . BA 4 HOH D 3 1003 146 HOH WAT . CA 4 HOH A 1 804 21 HOH WAT . CA 4 HOH A 2 805 148 HOH WAT . CA 4 HOH A 3 806 149 HOH WAT . DA 4 HOH E 1 904 147 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BER . . . T 3 109.426 45.703 92.527 1 58.4 ? C1 BER 803 A 1 HETATM 2 C C2 BER . . . T 3 108.127 45.512 91.775 1 59.53 ? C2 BER 803 A 1 HETATM 3 N N1 BER . . . T 3 110.67 45.869 91.777 1 56.48 ? N1 BER 803 A 1 HETATM 4 C C3 BER . . . T 3 109.444 45.704 93.976 1 53.8 ? C3 BER 803 A 1 HETATM 5 C C4 BER . . . T 3 108.151 45.226 90.292 1 60.08 ? C4 BER 803 A 1 HETATM 6 C C5 BER . . . T 3 106.865 45.566 92.491 1 59.54 ? C5 BER 803 A 1 HETATM 7 C C6 BER . . . T 3 111.918 46.001 92.495 1 53.85 ? C6 BER 803 A 1 HETATM 8 C C7 BER . . . T 3 110.68 45.888 90.228 1 56.37 ? C7 BER 803 A 1 HETATM 9 C C8 BER . . . T 3 110.68 45.846 94.671 1 51.82 ? C8 BER 803 A 1 HETATM 10 C C9 BER . . . T 3 106.895 45.024 89.6 1 61.94 ? C9 BER 803 A 1 HETATM 11 C C10 BER . . . T 3 109.488 45.143 89.503 1 57.23 ? C10 BER 803 A 1 HETATM 12 C C11 BER . . . T 3 105.635 45.359 91.789 1 60.77 ? C11 BER 803 A 1 HETATM 13 C C12 BER . . . T 3 111.949 45.985 93.943 1 52.1 ? C12 BER 803 A 1 HETATM 14 C C13 BER . . . T 3 110.667 45.841 96.079 1 51.32 ? C13 BER 803 A 1 HETATM 15 C C14 BER . . . T 3 105.632 45.088 90.342 1 62.1 ? C14 BER 803 A 1 HETATM 16 O O1 BER . . . T 3 104.334 45.356 92.234 1 61.3 ? O1 BER 803 A 1 HETATM 17 C C15 BER . . . T 3 113.224 46.107 94.679 1 50.67 ? C15 BER 803 A 1 HETATM 18 C C16 BER . . . T 3 111.894 45.967 96.814 1 52.47 ? C16 BER 803 A 1 HETATM 19 O O2 BER . . . T 3 104.302 44.932 89.927 1 61.65 ? O2 BER 803 A 1 HETATM 20 C C17 BER . . . T 3 103.527 44.779 91.146 1 61.54 ? C17 BER 803 A 1 HETATM 21 C C18 BER . . . T 3 113.188 46.093 96.162 1 51.94 ? C18 BER 803 A 1 HETATM 22 O O3 BER . . . T 3 114.441 46.227 93.93 1 51.41 ? O3 BER 803 A 1 HETATM 23 O O4 BER . . . T 3 114.393 46.211 96.949 1 52.43 ? O4 BER 803 A 1 HETATM 24 C C19 BER . . . T 3 115.772 46.352 94.53 1 47.47 ? C19 BER 803 A 1 HETATM 25 C C20 BER . . . T 3 114.392 46.207 98.42 1 49.42 ? C20 BER 803 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 636 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #