data_1JUP # _model_server_result.job_id HlDjjhu-xbJCBFCE945xMg _model_server_result.datetime_utc '2024-11-25 05:10:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":200}' # _entry.id 1JUP # _exptl.entry_id 1JUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JUP _cell.length_a 174.2 _cell.length_b 174.2 _cell.length_c 96.3 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,N,O,P,Q,R,S,BA,DA 1 1 B,D,J,K,L,M,T,U,V,W,X,Y,Z,AA,CA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 237 n n C1 C8 MGR sing 238 n n C1 C14 MGR doub 239 n n C2 C3 MGR doub 240 n y C2 C7 MGR sing 241 n y C3 C4 MGR sing 242 n y C3 H31 MGR sing 243 n n C4 C5 MGR doub 244 n y C4 H41 MGR sing 245 n n C5 C6 MGR sing 246 n y C5 H51 MGR sing 247 n n C6 C7 MGR doub 248 n y C6 H61 MGR sing 249 n n C7 H71 MGR sing 250 n n C8 C9 MGR doub 251 n y C8 C13 MGR sing 252 n y C9 C10 MGR sing 253 n y C9 H91 MGR sing 254 n n C10 C11 MGR doub 255 n y C10 H101 MGR sing 256 n n C11 C12 MGR sing 257 n y C11 N2 MGR sing 258 n n C12 C13 MGR doub 259 n y C12 H121 MGR sing 260 n n C13 H131 MGR sing 261 n n C14 C15 MGR sing 262 n n C14 C19 MGR sing 263 n n C15 C16 MGR doub 264 n n C15 H151 MGR sing 265 n n C16 C17 MGR sing 266 n n C16 H161 MGR sing 267 n n C17 C18 MGR sing 268 n n C17 N3 MGR doub 269 n n C18 C19 MGR doub 270 n n C18 H181 MGR sing 271 n n C19 H191 MGR sing 272 n n C22 N2 MGR sing 273 n n C22 H221 MGR sing 274 n n C22 H222 MGR sing 275 n n C22 H223 MGR sing 276 n n C23 N2 MGR sing 277 n n C23 H231 MGR sing 278 n n C23 H232 MGR sing 279 n n C23 H233 MGR sing 280 n n C24 N3 MGR sing 281 n n C24 H241 MGR sing 282 n n C24 H242 MGR sing 283 n n C24 H243 MGR sing 284 n n C25 N3 MGR sing 285 n n C25 H251 MGR sing 286 n n C25 H252 MGR sing 287 n n C25 H253 MGR sing 288 n n # _atom_sites.entry_id 1JUP _atom_sites.fract_transf_matrix[1][1] 0.005741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 195 19 SO4 SO4 . F 2 SO4 B 1 199 199 SO4 SO4 . G 2 SO4 B 1 499 499 SO4 SO4 . H 2 SO4 B 1 700 699 SO4 SO4 . I 2 SO4 B 1 1000 999 SO4 SO4 . J 2 SO4 D 1 899 899 SO4 SO4 . K 2 SO4 D 1 900 69 SO4 SO4 . L 2 SO4 D 1 999 999 SO4 SO4 . M 2 SO4 D 1 399 399 SO4 SO4 . N 2 SO4 A 1 299 299 SO4 SO4 . O 2 SO4 A 1 799 799 SO4 SO4 . P 2 SO4 A 1 800 799 SO4 SO4 . Q 2 SO4 A 1 801 799 SO4 SO4 . R 2 SO4 A 1 802 79 SO4 SO4 . S 3 MGR A 1 200 0 MGR MGR . T 2 SO4 E 1 900 899 SO4 SO4 . U 2 SO4 E 1 901 49 SO4 SO4 . V 2 SO4 E 1 699 699 SO4 SO4 . W 2 SO4 E 1 902 89 SO4 SO4 . X 2 SO4 E 1 903 79 SO4 SO4 . Y 2 SO4 E 1 904 39 SO4 SO4 . Z 2 SO4 E 1 639 639 SO4 SO4 . AA 2 SO4 E 1 579 579 SO4 SO4 . BA 4 HOH B 1 1001 149 HOH WAT . CA 4 HOH D 1 1000 44 HOH WAT . CA 4 HOH D 2 1001 146 HOH WAT . DA 4 HOH A 1 803 21 HOH WAT . DA 4 HOH A 2 804 148 HOH WAT . EA 4 HOH E 1 905 142 HOH WAT . EA 4 HOH E 2 906 147 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . S 3 103.337 46.651 90.706 1 31.59 ? C1 MGR 200 A 1 HETATM 2 C C2 MGR . . . S 3 102.838 48.123 90.426 1 31.02 ? C2 MGR 200 A 1 HETATM 3 C C3 MGR . . . S 3 102.431 48.577 89.09 1 28.6 ? C3 MGR 200 A 1 HETATM 4 C C4 MGR . . . S 3 101.983 49.918 88.859 1 29.55 ? C4 MGR 200 A 1 HETATM 5 C C5 MGR . . . S 3 101.91 50.902 89.925 1 27.78 ? C5 MGR 200 A 1 HETATM 6 C C6 MGR . . . S 3 102.298 50.508 91.264 1 29.58 ? C6 MGR 200 A 1 HETATM 7 C C7 MGR . . . S 3 102.746 49.169 91.512 1 31.13 ? C7 MGR 200 A 1 HETATM 8 C C8 MGR . . . S 3 104.534 46.396 91.606 1 31.74 ? C8 MGR 200 A 1 HETATM 9 C C9 MGR . . . S 3 105.533 47.512 91.882 1 32.83 ? C9 MGR 200 A 1 HETATM 10 C C10 MGR . . . S 3 106.635 47.392 92.731 1 30.54 ? C10 MGR 200 A 1 HETATM 11 C C11 MGR . . . S 3 106.895 46.109 93.406 1 32.51 ? C11 MGR 200 A 1 HETATM 12 C C12 MGR . . . S 3 105.931 44.949 93.156 1 30.5 ? C12 MGR 200 A 1 HETATM 13 C C13 MGR . . . S 3 104.814 45.106 92.277 1 28.97 ? C13 MGR 200 A 1 HETATM 14 C C14 MGR . . . S 3 102.554 45.515 90.123 1 32.16 ? C14 MGR 200 A 1 HETATM 15 C C15 MGR . . . S 3 103.185 44.376 89.436 1 30.74 ? C15 MGR 200 A 1 HETATM 16 C C16 MGR . . . S 3 102.431 43.328 88.88 1 28.48 ? C16 MGR 200 A 1 HETATM 17 C C17 MGR . . . S 3 101.03 43.328 88.968 1 28.91 ? C17 MGR 200 A 1 HETATM 18 C C18 MGR . . . S 3 100.388 44.425 89.64 1 30.23 ? C18 MGR 200 A 1 HETATM 19 C C19 MGR . . . S 3 101.112 45.476 90.198 1 31.63 ? C19 MGR 200 A 1 HETATM 20 C C22 MGR . . . S 3 108.197 44.663 95.008 1 33.4 ? C22 MGR 200 A 1 HETATM 21 C C23 MGR . . . S 3 108.939 47.117 94.563 1 29.76 ? C23 MGR 200 A 1 HETATM 22 C C24 MGR . . . S 3 100.008 42.216 87.002 1 31.63 ? C24 MGR 200 A 1 HETATM 23 C C25 MGR . . . S 3 99.555 41.35 89.288 1 30.82 ? C25 MGR 200 A 1 HETATM 24 N N2 MGR . . . S 3 107.969 45.996 94.277 1 34.56 ? N2 MGR 200 A 1 HETATM 25 N N3 MGR . . . S 3 100.259 42.34 88.439 1 32.11 ? N3 MGR 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #