data_1JUS # _model_server_result.job_id JnVQUlLPm7Ch38qBQ5CbUw _model_server_result.datetime_utc '2024-11-28 21:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":201}' # _entry.id 1JUS # _exptl.entry_id 1JUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RHODAMINE 6G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JUS _cell.length_a 172.3 _cell.length_b 172.3 _cell.length_c 95 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,P,Q,R,S,T,U,V,W,CA,EA 1 1 B,D,K,L,M,N,O,X,Y,Z,AA,BA,DA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 115 B LYS 115 1_555 A N MSE 116 B MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 116 B MSE 116 1_555 A N ASN 117 B ASN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 174 B LEU 174 1_555 A N MSE 175 B MSE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 175 B MSE 175 1_555 A N ASN 176 B ASN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C LYS 115 D LYS 115 1_555 B N MSE 116 D MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C MSE 116 D MSE 116 1_555 B N ASN 117 D ASN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C LEU 174 D LEU 174 1_555 B N MSE 175 D MSE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C MSE 175 D MSE 175 1_555 B N ASN 176 D ASN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 C C LYS 115 A LYS 115 1_555 C N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 C C MSE 116 A MSE 116 1_555 C N ASN 117 A ASN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 C C LEU 174 A LEU 174 1_555 C N MSE 175 A MSE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C MSE 175 A MSE 175 1_555 C N ASN 176 A ASN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 D C LYS 115 E LYS 115 1_555 D N MSE 116 E MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 D C MSE 116 E MSE 116 1_555 D N ASN 117 E ASN 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 D C LEU 174 E LEU 174 1_555 D N MSE 175 E MSE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 D C MSE 175 E MSE 175 1_555 D N ASN 176 E ASN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'RHODAMINE 6G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RHQ sing 277 n y C1 C6 RHQ doub 278 n y C1 O1 RHQ sing 279 n y C2 C3 RHQ sing 280 n y C2 C9 RHQ doub 281 n y C3 C4 RHQ doub 282 n y C3 H31 RHQ sing 283 n n C4 C5 RHQ sing 284 n y C4 C21 RHQ sing 285 n n C5 C6 RHQ sing 286 n y C5 N2 RHQ doub 287 z n C6 H61 RHQ sing 288 n n O1 C7 RHQ sing 289 n y C7 C8 RHQ doub 290 n y C7 C10 RHQ sing 291 n y C8 C9 RHQ sing 292 n y C8 C13 RHQ sing 293 n y C9 C14 RHQ sing 294 n y C10 C11 RHQ doub 295 n y C10 H101 RHQ sing 296 n n C11 C12 RHQ sing 297 n y C11 N1 RHQ sing 298 n n C12 C13 RHQ doub 299 n y C12 C20 RHQ sing 300 n n C13 H131 RHQ sing 301 n n N1 C22 RHQ sing 302 n n N1 HN11 RHQ sing 303 n n C14 C15 RHQ doub 304 n y C14 C19 RHQ sing 305 n y C15 C16 RHQ sing 306 n y C15 H151 RHQ sing 307 n n C16 C17 RHQ doub 308 n y C16 H161 RHQ sing 309 n n C17 C18 RHQ sing 310 n y C17 H171 RHQ sing 311 n n C18 C19 RHQ doub 312 n y C18 H181 RHQ sing 313 n n C19 C26 RHQ sing 314 n n C20 H201 RHQ sing 315 n n C20 H202 RHQ sing 316 n n C20 H203 RHQ sing 317 n n C21 H211 RHQ sing 318 n n C21 H212 RHQ sing 319 n n C21 H213 RHQ sing 320 n n C22 C23 RHQ sing 321 n n C22 H221 RHQ sing 322 n n C22 H222 RHQ sing 323 n n C23 H231 RHQ sing 324 n n C23 H232 RHQ sing 325 n n C23 H233 RHQ sing 326 n n N2 C24 RHQ sing 327 n n N2 HN21 RHQ sing 328 n n C24 C25 RHQ sing 329 n n C24 H241 RHQ sing 330 n n C24 H242 RHQ sing 331 n n C25 H251 RHQ sing 332 n n C25 H252 RHQ sing 333 n n C25 H253 RHQ sing 334 n n C26 O27 RHQ doub 335 n n C26 O2 RHQ sing 336 n n O2 C28 RHQ sing 337 n n C28 C29 RHQ sing 338 n n C28 H281 RHQ sing 339 n n C28 H282 RHQ sing 340 n n C29 H291 RHQ sing 341 n n C29 H292 RHQ sing 342 n n C29 H293 RHQ sing 343 n n # _atom_sites.entry_id 1JUS _atom_sites.fract_transf_matrix[1][1] 0.005804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 600 599 SO4 SO4 . F 2 SO4 B 1 601 19 SO4 SO4 . G 2 SO4 B 1 199 199 SO4 SO4 . H 2 SO4 B 1 499 499 SO4 SO4 . I 2 SO4 B 1 700 699 SO4 SO4 . J 2 SO4 B 1 1000 999 SO4 SO4 . K 2 SO4 D 1 899 899 SO4 SO4 . L 2 SO4 D 1 900 69 SO4 SO4 . M 2 SO4 D 1 901 69 SO4 SO4 . N 2 SO4 D 1 999 999 SO4 SO4 . O 2 SO4 D 1 1000 79 SO4 SO4 . P 2 SO4 A 1 599 599 SO4 SO4 . Q 2 SO4 A 1 299 299 SO4 SO4 . R 2 SO4 A 1 699 699 SO4 SO4 . S 2 SO4 A 1 799 799 SO4 SO4 . T 2 SO4 A 1 800 799 SO4 SO4 . U 2 SO4 A 1 801 799 SO4 SO4 . V 2 SO4 A 1 802 79 SO4 SO4 . W 3 RHQ A 1 201 1 RHQ RHO . X 2 SO4 E 1 900 899 SO4 SO4 . Y 2 SO4 E 1 901 49 SO4 SO4 . Z 2 SO4 E 1 399 399 SO4 SO4 . AA 2 SO4 E 1 902 89 SO4 SO4 . BA 2 SO4 E 1 903 39 SO4 SO4 . CA 4 HOH B 1 1001 19 HOH WAT . CA 4 HOH B 2 1002 34 HOH WAT . CA 4 HOH B 3 1003 35 HOH WAT . CA 4 HOH B 4 1004 36 HOH WAT . CA 4 HOH B 5 1005 37 HOH WAT . CA 4 HOH B 6 1006 38 HOH WAT . CA 4 HOH B 7 1007 41 HOH WAT . CA 4 HOH B 8 1008 46 HOH WAT . CA 4 HOH B 9 1009 49 HOH WAT . CA 4 HOH B 10 1010 64 HOH WAT . CA 4 HOH B 11 1011 65 HOH WAT . DA 4 HOH D 1 1001 15 HOH WAT . DA 4 HOH D 2 1002 17 HOH WAT . DA 4 HOH D 3 1003 18 HOH WAT . DA 4 HOH D 4 1004 42 HOH WAT . DA 4 HOH D 5 1005 43 HOH WAT . DA 4 HOH D 6 1006 44 HOH WAT . DA 4 HOH D 7 1007 50 HOH WAT . DA 4 HOH D 8 1008 59 HOH WAT . DA 4 HOH D 9 1009 60 HOH WAT . DA 4 HOH D 10 1010 66 HOH WAT . EA 4 HOH A 1 803 10 HOH WAT . EA 4 HOH A 2 804 14 HOH WAT . EA 4 HOH A 3 805 16 HOH WAT . EA 4 HOH A 4 806 20 HOH WAT . EA 4 HOH A 5 807 21 HOH WAT . EA 4 HOH A 6 808 22 HOH WAT . EA 4 HOH A 7 809 23 HOH WAT . EA 4 HOH A 8 810 24 HOH WAT . EA 4 HOH A 9 811 25 HOH WAT . EA 4 HOH A 10 812 26 HOH WAT . EA 4 HOH A 11 813 27 HOH WAT . EA 4 HOH A 12 814 28 HOH WAT . EA 4 HOH A 13 815 29 HOH WAT . EA 4 HOH A 14 816 30 HOH WAT . EA 4 HOH A 15 817 39 HOH WAT . EA 4 HOH A 16 818 40 HOH WAT . EA 4 HOH A 17 819 45 HOH WAT . EA 4 HOH A 18 820 47 HOH WAT . EA 4 HOH A 19 821 51 HOH WAT . EA 4 HOH A 20 822 53 HOH WAT . EA 4 HOH A 21 823 54 HOH WAT . EA 4 HOH A 22 824 55 HOH WAT . EA 4 HOH A 23 825 56 HOH WAT . EA 4 HOH A 24 826 57 HOH WAT . EA 4 HOH A 25 827 58 HOH WAT . FA 4 HOH E 1 904 1 HOH WAT . FA 4 HOH E 2 905 2 HOH WAT . FA 4 HOH E 3 906 3 HOH WAT . FA 4 HOH E 4 907 4 HOH WAT . FA 4 HOH E 5 908 6 HOH WAT . FA 4 HOH E 6 909 9 HOH WAT . FA 4 HOH E 7 910 11 HOH WAT . FA 4 HOH E 8 911 13 HOH WAT . FA 4 HOH E 9 912 31 HOH WAT . FA 4 HOH E 10 913 32 HOH WAT . FA 4 HOH E 11 914 33 HOH WAT . FA 4 HOH E 12 915 48 HOH WAT . FA 4 HOH E 13 916 52 HOH WAT . FA 4 HOH E 14 917 61 HOH WAT . FA 4 HOH E 15 918 62 HOH WAT . FA 4 HOH E 16 919 63 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RHQ . . . W 3 -63.534 -46.259 1.538 1 38.9 ? C1 RHQ 201 A 1 HETATM 2 C C2 RHQ . . . W 3 -63.304 -46.069 3.025 1 36.63 ? C2 RHQ 201 A 1 HETATM 3 C C3 RHQ . . . W 3 -61.968 -45.537 3.481 1 30.42 ? C3 RHQ 201 A 1 HETATM 4 C C4 RHQ . . . W 3 -60.91 -45.229 2.43 1 33.76 ? C4 RHQ 201 A 1 HETATM 5 C C5 RHQ . . . W 3 -61.181 -45.466 1.025 1 37.23 ? C5 RHQ 201 A 1 HETATM 6 C C6 RHQ . . . W 3 -62.469 -45.956 0.486 1 38.91 ? C6 RHQ 201 A 1 HETATM 7 O O1 RHQ . . . W 3 -64.764 -46.769 0.917 1 32.24 ? O1 RHQ 201 A 1 HETATM 8 C C7 RHQ . . . W 3 -65.828 -47.137 1.924 1 40.86 ? C7 RHQ 201 A 1 HETATM 9 C C8 RHQ . . . W 3 -65.651 -46.98 3.477 1 39.55 ? C8 RHQ 201 A 1 HETATM 10 C C9 RHQ . . . W 3 -64.406 -46.437 4.202 1 37.18 ? C9 RHQ 201 A 1 HETATM 11 C C10 RHQ . . . W 3 -67.021 -47.651 1.355 1 41.93 ? C10 RHQ 201 A 1 HETATM 12 C C11 RHQ . . . W 3 -68.198 -48.123 2.197 1 39.65 ? C11 RHQ 201 A 1 HETATM 13 C C12 RHQ . . . W 3 -68.099 -47.989 3.747 1 38.82 ? C12 RHQ 201 A 1 HETATM 14 C C13 RHQ . . . W 3 -66.896 -47.46 4.353 1 37.98 ? C13 RHQ 201 A 1 HETATM 15 N N1 RHQ . . . W 3 -69.233 -48.669 1.41 1 37.86 ? N1 RHQ 201 A 1 HETATM 16 C C14 RHQ . . . W 3 -63.999 -46.533 5.811 1 40.73 ? C14 RHQ 201 A 1 HETATM 17 C C15 RHQ . . . W 3 -63.712 -47.876 6.37 1 38.54 ? C15 RHQ 201 A 1 HETATM 18 C C16 RHQ . . . W 3 -63.307 -48.111 7.883 1 41.46 ? C16 RHQ 201 A 1 HETATM 19 C C17 RHQ . . . W 3 -63.197 -46.944 8.856 1 38.43 ? C17 RHQ 201 A 1 HETATM 20 C C18 RHQ . . . W 3 -63.469 -45.615 8.33 1 35.84 ? C18 RHQ 201 A 1 HETATM 21 C C19 RHQ . . . W 3 -63.84 -45.424 6.926 1 43.39 ? C19 RHQ 201 A 1 HETATM 22 C C20 RHQ . . . W 3 -69.231 -48.441 4.743 1 40.96 ? C20 RHQ 201 A 1 HETATM 23 C C21 RHQ . . . W 3 -59.434 -44.698 2.822 1 30.35 ? C21 RHQ 201 A 1 HETATM 24 C C22 RHQ . . . W 3 -70.771 -48.723 1.676 1 38.11 ? C22 RHQ 201 A 1 HETATM 25 C C23 RHQ . . . W 3 -71.124 -50.099 2.388 1 36.8 ? C23 RHQ 201 A 1 HETATM 26 N N2 RHQ . . . W 3 -60.356 -45.317 -0.179 1 39.02 ? N2 RHQ 201 A 1 HETATM 27 C C24 RHQ . . . W 3 -58.973 -44.915 -0.487 1 42.42 ? C24 RHQ 201 A 1 HETATM 28 C C25 RHQ . . . W 3 -59.092 -43.851 -1.673 1 40.8 ? C25 RHQ 201 A 1 HETATM 29 C C26 RHQ . . . W 3 -64.034 -44.038 6.676 1 44.46 ? C26 RHQ 201 A 1 HETATM 30 O O27 RHQ . . . W 3 -63.414 -43.549 5.603 1 48.14 ? O27 RHQ 201 A 1 HETATM 31 O O2 RHQ . . . W 3 -64.908 -43.299 7.642 1 40.56 ? O2 RHQ 201 A 1 HETATM 32 C C28 RHQ . . . W 3 -65.282 -41.86 7.604 1 44.16 ? C28 RHQ 201 A 1 HETATM 33 C C29 RHQ . . . W 3 -64.975 -41.229 6.234 1 31.08 ? C29 RHQ 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #