data_1JV4 # _model_server_result.job_id 7WIuc0aBNJWMP4xiAkDNMA _model_server_result.datetime_utc '2025-04-18 17:20:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":166}' # _entry.id 1JV4 # _exptl.entry_id 1JV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.24 _cell.angle_gamma 90 _cell.entry_id 1JV4 _cell.length_a 37.14 _cell.length_b 55.79 _cell.length_c 37.67 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 64 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OE2 GLU 18 A GLU 18 1_554 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A OE1 GLU 18 A GLU 18 1_555 E CD CD . A CD 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A OE2 GLU 18 A GLU 18 1_555 E CD CD . A CD 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A NE2 HIS 20 A HIS 20 1_554 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc5 A OE1 GLU 43 A GLU 43 1_555 G CD CD . A CD 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 A OE2 GLU 43 A GLU 43 1_555 G CD CD . A CD 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc7 A OE2 GLU 63 A GLU 63 1_555 F CD CD . A CD 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 A OE1 GLU 63 A GLU 63 1_555 F CD CD . A CD 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc9 A OD1 ASP 72 A ASP 72 1_555 H CD CD . A CD 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 A OD2 ASP 72 A ASP 72 1_555 H CD CD . A CD 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 A OE2 GLU 75 A GLU 75 1_555 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc12 A OE1 GLU 75 A GLU 75 1_555 B CD CD . A CD 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc13 A OE2 GLU 75 A GLU 75 1_556 E CD CD . A CD 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc14 A NE2 HIS 104 A HIS 104 1_555 C CD CD . A CD 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 A ND1 HIS 141 A HIS 141 1_555 C CD CD . A CD 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 B CD CD . A CD 163 1_555 J O HOH . A HOH 186 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc17 B CD CD . A CD 163 1_555 J O HOH . A HOH 199 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc18 B CD CD . A CD 163 1_555 J O HOH . A HOH 304 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc19 C CD CD . A CD 164 1_555 J O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc20 C CD CD . A CD 164 1_555 J O HOH . A HOH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc21 D CD CD . A CD 165 1_555 J O HOH . A HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc22 F CD CD . A CD 167 1_555 J O HOH . A HOH 274 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc23 G CD CD . A CD 168 1_555 J O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc24 H CD CD . A CD 169 1_555 J O HOH . A HOH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc25 H CD CD . A CD 169 1_555 J O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JV4 _atom_sites.fract_transf_matrix[1][1] 0.026925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001523 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 163 159 CD CD . C 2 CD A 1 164 160 CD CD . D 2 CD A 1 165 161 CD CD . E 2 CD A 1 166 162 CD CD . F 2 CD A 1 167 163 CD CD . G 2 CD A 1 168 164 CD CD . H 2 CD A 1 169 165 CD CD . I 3 TZL A 1 170 158 TZL TZL . J 4 HOH A 1 171 166 HOH HOH . J 4 HOH A 2 172 167 HOH HOH . J 4 HOH A 3 173 168 HOH HOH . J 4 HOH A 4 174 169 HOH HOH . J 4 HOH A 5 175 170 HOH HOH . J 4 HOH A 6 176 171 HOH HOH . J 4 HOH A 7 177 172 HOH HOH . J 4 HOH A 8 178 173 HOH HOH . J 4 HOH A 9 179 174 HOH HOH . J 4 HOH A 10 180 175 HOH HOH . J 4 HOH A 11 181 176 HOH HOH . J 4 HOH A 12 182 177 HOH HOH . J 4 HOH A 13 183 178 HOH HOH . J 4 HOH A 14 184 179 HOH HOH . J 4 HOH A 15 185 180 HOH HOH . J 4 HOH A 16 186 181 HOH HOH . J 4 HOH A 17 187 182 HOH HOH . J 4 HOH A 18 188 183 HOH HOH . J 4 HOH A 19 189 184 HOH HOH . J 4 HOH A 20 190 185 HOH HOH . J 4 HOH A 21 191 186 HOH HOH . J 4 HOH A 22 192 187 HOH HOH . J 4 HOH A 23 193 188 HOH HOH . J 4 HOH A 24 194 189 HOH HOH . J 4 HOH A 25 195 190 HOH HOH . J 4 HOH A 26 196 191 HOH HOH . J 4 HOH A 27 197 192 HOH HOH . J 4 HOH A 28 198 193 HOH HOH . J 4 HOH A 29 199 194 HOH HOH . J 4 HOH A 30 200 195 HOH HOH . J 4 HOH A 31 201 196 HOH HOH . J 4 HOH A 32 202 197 HOH HOH . J 4 HOH A 33 203 198 HOH HOH . J 4 HOH A 34 204 199 HOH HOH . J 4 HOH A 35 205 200 HOH HOH . J 4 HOH A 36 206 201 HOH HOH . J 4 HOH A 37 207 202 HOH HOH . J 4 HOH A 38 208 203 HOH HOH . J 4 HOH A 39 209 204 HOH HOH . J 4 HOH A 40 210 205 HOH HOH . J 4 HOH A 41 211 206 HOH HOH . J 4 HOH A 42 212 207 HOH HOH . J 4 HOH A 43 213 208 HOH HOH . J 4 HOH A 44 214 209 HOH HOH . J 4 HOH A 45 215 210 HOH HOH . J 4 HOH A 46 216 211 HOH HOH . J 4 HOH A 47 217 212 HOH HOH . J 4 HOH A 48 218 213 HOH HOH . J 4 HOH A 49 219 214 HOH HOH . J 4 HOH A 50 220 215 HOH HOH . J 4 HOH A 51 221 216 HOH HOH . J 4 HOH A 52 222 217 HOH HOH . J 4 HOH A 53 223 218 HOH HOH . J 4 HOH A 54 224 219 HOH HOH . J 4 HOH A 55 225 220 HOH HOH . J 4 HOH A 56 226 221 HOH HOH . J 4 HOH A 57 227 222 HOH HOH . J 4 HOH A 58 228 223 HOH HOH . J 4 HOH A 59 229 224 HOH HOH . J 4 HOH A 60 230 225 HOH HOH . J 4 HOH A 61 231 226 HOH HOH . J 4 HOH A 62 232 227 HOH HOH . J 4 HOH A 63 233 228 HOH HOH . J 4 HOH A 64 234 229 HOH HOH . J 4 HOH A 65 235 230 HOH HOH . J 4 HOH A 66 236 231 HOH HOH . J 4 HOH A 67 237 232 HOH HOH . J 4 HOH A 68 238 233 HOH HOH . J 4 HOH A 69 239 234 HOH HOH . J 4 HOH A 70 240 235 HOH HOH . J 4 HOH A 71 241 236 HOH HOH . J 4 HOH A 72 242 237 HOH HOH . J 4 HOH A 73 243 238 HOH HOH . J 4 HOH A 74 244 239 HOH HOH . J 4 HOH A 75 245 240 HOH HOH . J 4 HOH A 76 246 241 HOH HOH . J 4 HOH A 77 247 242 HOH HOH . J 4 HOH A 78 248 243 HOH HOH . J 4 HOH A 79 249 244 HOH HOH . J 4 HOH A 80 250 245 HOH HOH . J 4 HOH A 81 251 246 HOH HOH . J 4 HOH A 82 252 247 HOH HOH . J 4 HOH A 83 253 248 HOH HOH . J 4 HOH A 84 254 249 HOH HOH . J 4 HOH A 85 255 250 HOH HOH . J 4 HOH A 86 256 251 HOH HOH . J 4 HOH A 87 257 252 HOH HOH . J 4 HOH A 88 258 253 HOH HOH . J 4 HOH A 89 259 254 HOH HOH . J 4 HOH A 90 260 255 HOH HOH . J 4 HOH A 91 261 256 HOH HOH . J 4 HOH A 92 262 257 HOH HOH . J 4 HOH A 93 263 258 HOH HOH . J 4 HOH A 94 264 259 HOH HOH . J 4 HOH A 95 265 260 HOH HOH . J 4 HOH A 96 266 261 HOH HOH . J 4 HOH A 97 267 262 HOH HOH . J 4 HOH A 98 268 263 HOH HOH . J 4 HOH A 99 269 264 HOH HOH . J 4 HOH A 100 270 265 HOH HOH . J 4 HOH A 101 271 266 HOH HOH . J 4 HOH A 102 272 267 HOH HOH . J 4 HOH A 103 273 268 HOH HOH . J 4 HOH A 104 274 269 HOH HOH . J 4 HOH A 105 275 270 HOH HOH . J 4 HOH A 106 276 271 HOH HOH . J 4 HOH A 107 277 272 HOH HOH . J 4 HOH A 108 278 273 HOH HOH . J 4 HOH A 109 279 274 HOH HOH . J 4 HOH A 110 280 275 HOH HOH . J 4 HOH A 111 281 276 HOH HOH . J 4 HOH A 112 282 277 HOH HOH . J 4 HOH A 113 283 278 HOH HOH . J 4 HOH A 114 284 279 HOH HOH . J 4 HOH A 115 285 280 HOH HOH . J 4 HOH A 116 286 281 HOH HOH . J 4 HOH A 117 287 282 HOH HOH . J 4 HOH A 118 288 283 HOH HOH . J 4 HOH A 119 289 284 HOH HOH . J 4 HOH A 120 290 285 HOH HOH . J 4 HOH A 121 291 286 HOH HOH . J 4 HOH A 122 292 287 HOH HOH . J 4 HOH A 123 293 288 HOH HOH . J 4 HOH A 124 294 289 HOH HOH . J 4 HOH A 125 295 290 HOH HOH . J 4 HOH A 126 296 291 HOH HOH . J 4 HOH A 127 297 292 HOH HOH . J 4 HOH A 128 298 293 HOH HOH . J 4 HOH A 129 299 294 HOH HOH . J 4 HOH A 130 300 295 HOH HOH . J 4 HOH A 131 301 296 HOH HOH . J 4 HOH A 132 302 297 HOH HOH . J 4 HOH A 133 303 298 HOH HOH . J 4 HOH A 134 304 299 HOH HOH . J 4 HOH A 135 305 300 HOH HOH . J 4 HOH A 136 306 301 HOH HOH . J 4 HOH A 137 307 302 HOH HOH . J 4 HOH A 138 308 303 HOH HOH . J 4 HOH A 139 309 304 HOH HOH . J 4 HOH A 140 310 305 HOH HOH . J 4 HOH A 141 311 306 HOH HOH . J 4 HOH A 142 312 307 HOH HOH . J 4 HOH A 143 313 308 HOH HOH . J 4 HOH A 144 314 309 HOH HOH . J 4 HOH A 145 315 310 HOH HOH . J 4 HOH A 146 316 311 HOH HOH . J 4 HOH A 147 317 312 HOH HOH . J 4 HOH A 148 318 313 HOH HOH . J 4 HOH A 149 319 314 HOH HOH . J 4 HOH A 150 320 315 HOH HOH . J 4 HOH A 151 321 316 HOH HOH . J 4 HOH A 152 322 317 HOH HOH . J 4 HOH A 153 323 318 HOH HOH . J 4 HOH A 154 324 319 HOH HOH . J 4 HOH A 155 325 320 HOH HOH . J 4 HOH A 156 326 321 HOH HOH . J 4 HOH A 157 327 322 HOH HOH . J 4 HOH A 158 328 323 HOH HOH . J 4 HOH A 159 329 324 HOH HOH . J 4 HOH A 160 330 325 HOH HOH . J 4 HOH A 161 331 326 HOH HOH . J 4 HOH A 162 332 327 HOH HOH . J 4 HOH A 163 333 328 HOH HOH . J 4 HOH A 164 334 329 HOH HOH . J 4 HOH A 165 335 330 HOH HOH . J 4 HOH A 166 336 331 HOH HOH . J 4 HOH A 167 337 332 HOH HOH . J 4 HOH A 168 338 334 HOH HOH . J 4 HOH A 169 339 335 HOH HOH . J 4 HOH A 170 340 336 HOH HOH . J 4 HOH A 171 341 337 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.938 _atom_site.Cartn_y -10.182 _atom_site.Cartn_z 25.492 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 166 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #