data_1JV6
#
_model_server_result.job_id            029wGQm9UsU8Wk6miSmSrA 
_model_server_result.datetime_utc      '2024-12-08 03:09:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    1JV6 
#
_exptl.entry_id    1JV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JV6 
_cell.length_a            51.8 
_cell.length_b            121.3 
_cell.length_c            85.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.403 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 373 n n 
C1 C6 RET sing 374 n n 
C1 C16 RET sing 375 n n 
C1 C17 RET sing 376 n n 
C2 C3 RET sing 377 n n 
C2 H21 RET sing 378 n n 
C2 H22 RET sing 379 n n 
C3 C4 RET sing 380 n n 
C3 H31 RET sing 381 n n 
C3 H32 RET sing 382 n n 
C4 C5 RET sing 383 n n 
C4 H41 RET sing 384 n n 
C4 H42 RET sing 385 n n 
C5 C6 RET doub 386 n n 
C5 C18 RET sing 387 n n 
C6 C7 RET sing 388 n n 
C7 C8 RET doub 389 e n 
C7 H7 RET sing 390 n n 
C8 C9 RET sing 391 n n 
C8 H8 RET sing 392 n n 
C9 C10 RET doub 393 e n 
C9 C19 RET sing 394 n n 
C10 C11 RET sing 395 n n 
C10 H10 RET sing 396 n n 
C11 C12 RET doub 397 e n 
C11 H11 RET sing 398 n n 
C12 C13 RET sing 399 n n 
C12 H12 RET sing 400 n n 
C13 C14 RET doub 401 e n 
C13 C20 RET sing 402 n n 
C14 C15 RET sing 403 n n 
C14 H14 RET sing 404 n n 
C15 O1 RET doub 405 n n 
C15 H15 RET sing 406 n n 
C16 H161 RET sing 407 n n 
C16 H162 RET sing 408 n n 
C16 H163 RET sing 409 n n 
C17 H171 RET sing 410 n n 
C17 H172 RET sing 411 n n 
C17 H173 RET sing 412 n n 
C18 H181 RET sing 413 n n 
C18 H182 RET sing 414 n n 
C18 H183 RET sing 415 n n 
C19 H191 RET sing 416 n n 
C19 H192 RET sing 417 n n 
C19 H193 RET sing 418 n n 
C20 H201 RET sing 419 n n 
C20 H202 RET sing 420 n n 
C20 H203 RET sing 421 n n 
#
_atom_sites.entry_id                     1JV6 
_atom_sites.fract_transf_matrix[1][1]    0.019305 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 LI1 A 1 701 701 LI1 LI1 . 
D 3 LI1 A 1 702 702 LI1 LI1 . 
E 3 LI1 A 1 703 703 LI1 LI1 . 
F 3 LI1 A 1 710 710 LI1 LI1 . 
G 3 LI1 A 1 711 711 LI1 LI1 . 
H 3 LI1 A 1 712 712 LI1 LI1 . 
I 3 LI1 A 1 713 713 LI1 LI1 . 
J 3 LI1 A 1 722 722 LI1 LI1 . 
K 4 HOH A 1 402 402 HOH HOH . 
K 4 HOH A 2 405 405 HOH HOH . 
K 4 HOH A 3 407 407 HOH HOH . 
K 4 HOH A 4 409 409 HOH HOH . 
K 4 HOH A 5 410 410 HOH HOH . 
K 4 HOH A 6 419 419 HOH HOH . 
K 4 HOH A 7 420 420 HOH HOH . 
K 4 HOH A 8 421 421 HOH HOH . 
K 4 HOH A 9 422 422 HOH HOH . 
K 4 HOH A 10 423 423 HOH HOH . 
K 4 HOH A 11 501 501 HOH HOH . 
K 4 HOH A 12 502 502 HOH HOH . 
K 4 HOH A 13 503 503 HOH HOH . 
K 4 HOH A 14 510 510 HOH HOH . 
K 4 HOH A 15 511 511 HOH HOH . 
K 4 HOH A 16 512 512 HOH HOH . 
K 4 HOH A 17 513 513 HOH HOH . 
K 4 HOH A 18 514 514 HOH HOH . 
K 4 HOH A 19 515 515 HOH HOH . 
K 4 HOH A 20 516 516 HOH HOH . 
K 4 HOH A 21 517 517 HOH HOH . 
K 4 HOH A 22 518 518 HOH HOH . 
K 4 HOH A 23 519 519 HOH HOH . 
K 4 HOH A 24 520 520 HOH HOH . 
K 4 HOH A 25 521 521 HOH HOH . 
K 4 HOH A 26 522 522 HOH HOH . 
K 4 HOH A 27 523 523 HOH HOH . 
K 4 HOH A 28 524 524 HOH HOH . 
K 4 HOH A 29 525 525 HOH HOH . 
K 4 HOH A 30 526 526 HOH HOH . 
K 4 HOH A 31 527 527 HOH HOH . 
K 4 HOH A 32 528 528 HOH HOH . 
K 4 HOH A 33 529 529 HOH HOH . 
K 4 HOH A 34 530 530 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 43.931 35.36 4.733 1 21.22 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 44.342 36.598 5.6 1 20.38 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 44.501 36.374 7.039 1 25.31 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 45.49 35.204 7.324 1 23.29 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 45.295 33.983 6.429 1 22.44 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 44.602 34.002 5.248 1 20.66 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 44.463 32.773 4.412 1 20.49 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 43.836 32.535 3.231 1 18.87 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 43.79 31.303 2.458 1 20.38 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 43.093 31.29 1.288 1 18.74 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 42.933 30.217 0.363 1 21.84 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 42.22 30.27 -0.787 1 21.84 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 41.997 29.302 -1.81 1 20.4 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 41.203 29.723 -2.842 1 24.28 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 40.748 29.12 -4.019 1 23.29 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 42.387 35.279 4.759 1 21.89 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 44.418 35.779 3.316 1 21.85 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 45.987 32.779 7.05 1 21.67 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 44.542 30.095 2.989 1 20.76 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 42.625 27.926 -1.711 1 23.43 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           20 
#