data_1JVL
#
_model_server_result.job_id            m-iwArsFiwC6prbaOQ6j-w 
_model_server_result.datetime_utc      '2024-11-01 16:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":504}' 
#
_entry.id    1JVL 
#
_exptl.entry_id    1JVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIS-HYDROXYMETHYL-METHYL-AMMONIUM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1JVL 
_cell.length_a            48.605 
_cell.length_b            48.605 
_cell.length_c            284.809 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JVL 
_symmetry.cell_setting             hexagonal 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 I C3 OPP . B OPP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
covale ? covale2 B SG CYS 42 B CYS 42 1_555 I C3' OPP . B OPP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc1 A N ALA 1 A ALA 1 1_555 D NI NI . A NI 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc2 A O ALA 1 A ALA 1 1_555 D NI NI . A NI 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc3 A ND1 HIS 46 A HIS 46 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 A NE2 HIS 83 A HIS 83 5_564 G NI NI . B NI 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc5 A SG CYS 112 A CYS 112 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc6 A ND1 HIS 117 A HIS 117 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc7 D NI NI . A NI 130 1_555 E O2 144 . A 144 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc8 D NI NI . A NI 130 1_555 J O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc9 D NI NI . A NI 130 1_555 B NE2 HIS 83 B HIS 83 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc10 B N ALA 1 B ALA 1 1_555 G NI NI . B NI 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc11 B O ALA 1 B ALA 1 1_555 G NI NI . B NI 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc12 B ND1 HIS 46 B HIS 46 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc13 B SG CYS 112 B CYS 112 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc14 B ND1 HIS 117 B HIS 117 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc15 G NI NI . B NI 130 1_555 H O2 144 . B 144 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc16 G NI NI . B NI 130 1_555 K O HOH . B HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                144 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIS-HYDROXYMETHYL-METHYL-AMMONIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N 144 sing 1 n n 
C1 H11 144 sing 2 n n 
C1 H12 144 sing 3 n n 
C1 H13 144 sing 4 n n 
N C2 144 sing 5 n n 
N C3 144 sing 6 n n 
N C4 144 sing 7 n n 
C2 O2 144 sing 8 n n 
C2 H21 144 sing 9 n n 
C2 H22 144 sing 10 n n 
O2 HO2 144 sing 11 n n 
C3 O3 144 sing 12 n n 
C3 H31 144 sing 13 n n 
C3 H32 144 sing 14 n n 
O3 HO3 144 sing 15 n n 
C4 O4 144 sing 16 n n 
C4 H41 144 sing 17 n n 
C4 H42 144 sing 18 n n 
O4 HO4 144 sing 19 n n 
#
_atom_sites.entry_id                     1JVL 
_atom_sites.fract_transf_matrix[1][1]    0.020574 
_atom_sites.fract_transf_matrix[1][2]    0.011878 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003511 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 129 129 CU CU . 
D 3 NI A 1 130 130 NI NI . 
E 4 144 A 1 503 503 144 144 . 
F 2 CU B 1 129 129 CU CU . 
G 3 NI B 1 130 130 NI NI . 
H 4 144 B 1 504 504 144 144 . 
I 5 OPP B 1 505 505 OPP OPP . 
J 6 HOH A 1 504 1 HOH HOH . 
J 6 HOH A 2 505 2 HOH HOH . 
J 6 HOH A 3 506 3 HOH HOH . 
J 6 HOH A 4 507 4 HOH HOH . 
J 6 HOH A 5 508 5 HOH HOH . 
J 6 HOH A 6 509 6 HOH HOH . 
J 6 HOH A 7 510 7 HOH HOH . 
J 6 HOH A 8 511 8 HOH HOH . 
J 6 HOH A 9 512 9 HOH HOH . 
J 6 HOH A 10 513 10 HOH HOH . 
J 6 HOH A 11 514 11 HOH HOH . 
J 6 HOH A 12 515 12 HOH HOH . 
J 6 HOH A 13 516 13 HOH HOH . 
J 6 HOH A 14 517 14 HOH HOH . 
J 6 HOH A 15 518 15 HOH HOH . 
J 6 HOH A 16 519 16 HOH HOH . 
J 6 HOH A 17 520 17 HOH HOH . 
J 6 HOH A 18 521 18 HOH HOH . 
J 6 HOH A 19 522 19 HOH HOH . 
J 6 HOH A 20 523 20 HOH HOH . 
J 6 HOH A 21 524 21 HOH HOH . 
J 6 HOH A 22 525 22 HOH HOH . 
J 6 HOH A 23 526 23 HOH HOH . 
J 6 HOH A 24 527 24 HOH HOH . 
J 6 HOH A 25 528 25 HOH HOH . 
J 6 HOH A 26 529 26 HOH HOH . 
J 6 HOH A 27 530 27 HOH HOH . 
J 6 HOH A 28 531 28 HOH HOH . 
J 6 HOH A 29 532 29 HOH HOH . 
J 6 HOH A 30 533 30 HOH HOH . 
J 6 HOH A 31 534 31 HOH HOH . 
J 6 HOH A 32 535 32 HOH HOH . 
J 6 HOH A 33 536 33 HOH HOH . 
J 6 HOH A 34 537 34 HOH HOH . 
J 6 HOH A 35 538 35 HOH HOH . 
J 6 HOH A 36 539 36 HOH HOH . 
J 6 HOH A 37 540 37 HOH HOH . 
J 6 HOH A 38 541 38 HOH HOH . 
J 6 HOH A 39 542 39 HOH HOH . 
J 6 HOH A 40 543 40 HOH HOH . 
J 6 HOH A 41 544 41 HOH HOH . 
J 6 HOH A 42 545 42 HOH HOH . 
J 6 HOH A 43 546 43 HOH HOH . 
J 6 HOH A 44 547 44 HOH HOH . 
J 6 HOH A 45 548 45 HOH HOH . 
J 6 HOH A 46 549 46 HOH HOH . 
J 6 HOH A 47 550 47 HOH HOH . 
J 6 HOH A 48 551 48 HOH HOH . 
J 6 HOH A 49 552 49 HOH HOH . 
J 6 HOH A 50 553 51 HOH HOH . 
J 6 HOH A 51 554 52 HOH HOH . 
J 6 HOH A 52 555 53 HOH HOH . 
J 6 HOH A 53 556 54 HOH HOH . 
J 6 HOH A 54 557 111 HOH HOH . 
J 6 HOH A 55 558 112 HOH HOH . 
J 6 HOH A 56 559 113 HOH HOH . 
K 6 HOH B 1 506 50 HOH HOH . 
K 6 HOH B 2 507 55 HOH HOH . 
K 6 HOH B 3 508 56 HOH HOH . 
K 6 HOH B 4 509 57 HOH HOH . 
K 6 HOH B 5 510 58 HOH HOH . 
K 6 HOH B 6 511 59 HOH HOH . 
K 6 HOH B 7 512 60 HOH HOH . 
K 6 HOH B 8 513 61 HOH HOH . 
K 6 HOH B 9 514 62 HOH HOH . 
K 6 HOH B 10 515 63 HOH HOH . 
K 6 HOH B 11 516 64 HOH HOH . 
K 6 HOH B 12 517 65 HOH HOH . 
K 6 HOH B 13 518 66 HOH HOH . 
K 6 HOH B 14 519 67 HOH HOH . 
K 6 HOH B 15 520 68 HOH HOH . 
K 6 HOH B 16 521 69 HOH HOH . 
K 6 HOH B 17 522 70 HOH HOH . 
K 6 HOH B 18 523 71 HOH HOH . 
K 6 HOH B 19 524 72 HOH HOH . 
K 6 HOH B 20 525 73 HOH HOH . 
K 6 HOH B 21 526 74 HOH HOH . 
K 6 HOH B 22 527 75 HOH HOH . 
K 6 HOH B 23 528 76 HOH HOH . 
K 6 HOH B 24 529 77 HOH HOH . 
K 6 HOH B 25 530 78 HOH HOH . 
K 6 HOH B 26 531 79 HOH HOH . 
K 6 HOH B 27 532 80 HOH HOH . 
K 6 HOH B 28 533 81 HOH HOH . 
K 6 HOH B 29 534 82 HOH HOH . 
K 6 HOH B 30 535 83 HOH HOH . 
K 6 HOH B 31 536 84 HOH HOH . 
K 6 HOH B 32 537 85 HOH HOH . 
K 6 HOH B 33 538 86 HOH HOH . 
K 6 HOH B 34 539 87 HOH HOH . 
K 6 HOH B 35 540 88 HOH HOH . 
K 6 HOH B 36 541 89 HOH HOH . 
K 6 HOH B 37 542 90 HOH HOH . 
K 6 HOH B 38 543 91 HOH HOH . 
K 6 HOH B 39 544 92 HOH HOH . 
K 6 HOH B 40 545 93 HOH HOH . 
K 6 HOH B 41 546 94 HOH HOH . 
K 6 HOH B 42 547 95 HOH HOH . 
K 6 HOH B 43 548 96 HOH HOH . 
K 6 HOH B 44 549 97 HOH HOH . 
K 6 HOH B 45 550 98 HOH HOH . 
K 6 HOH B 46 551 99 HOH HOH . 
K 6 HOH B 47 552 100 HOH HOH . 
K 6 HOH B 48 553 101 HOH HOH . 
K 6 HOH B 49 554 102 HOH HOH . 
K 6 HOH B 50 555 103 HOH HOH . 
K 6 HOH B 51 556 104 HOH HOH . 
K 6 HOH B 52 557 105 HOH HOH . 
K 6 HOH B 53 558 106 HOH HOH . 
K 6 HOH B 54 559 107 HOH HOH . 
K 6 HOH B 55 560 108 HOH HOH . 
K 6 HOH B 56 561 109 HOH HOH . 
K 6 HOH B 57 562 110 HOH HOH . 
K 6 HOH B 58 563 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 144 . . . H 4 -1.298 25.621 -2.597 1 35.46 ? C1 144 504 B 1 
HETATM 2 N N 144 . . . H 4 -1.493 27.025 -2.263 1 42.68 ? N 144 504 B 1 
HETATM 3 C C2 144 . . . H 4 -2.966 27.272 -2.123 1 40.27 ? C2 144 504 B 1 
HETATM 4 O O2 144 . . . H 4 -3.968 26.671 -1.442 1 40.13 ? O2 144 504 B 1 
HETATM 5 C C3 144 . . . H 4 -0.81 27.818 -3.363 1 36.91 ? C3 144 504 B 1 
HETATM 6 O O3 144 . . . H 4 -0.818 29.241 -3.145 1 41.25 ? O3 144 504 B 1 
HETATM 7 C C4 144 . . . H 4 -0.851 27.219 -0.934 1 39.84 ? C4 144 504 B 1 
HETATM 8 O O4 144 . . . H 4 0.546 26.654 -0.389 1 48.67 ? O4 144 504 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#