data_1JVM # _model_server_result.job_id OwMivP3bLjsaPeZjaqfg4g _model_server_result.datetime_utc '2024-11-05 23:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":126}' # _entry.id 1JVM # _exptl.entry_id 1JVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.6 _cell.angle_gamma 90 _cell.entry_id 1JVM _cell.length_a 129.8 _cell.length_b 69.4 _cell.length_c 112.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 129.8 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 75 A THR 75 1_555 F RB RB . A RB 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc2 A O THR 75 A THR 75 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc3 A OG1 THR 75 A THR 75 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc4 A O VAL 76 A VAL 76 1_555 F RB RB . A RB 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 A O GLY 77 A GLY 77 1_555 E RB RB . A RB 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc6 A O TYR 78 A TYR 78 1_555 E RB RB . A RB 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc7 E RB RB . A RB 126 1_555 B O GLY 77 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc8 E RB RB . A RB 126 1_555 B O TYR 78 B TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.271 ? metalc ? metalc9 E RB RB . A RB 126 1_555 C O GLY 77 C GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc10 E RB RB . A RB 126 1_555 C O TYR 78 C TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.312 ? metalc ? metalc11 E RB RB . A RB 126 1_555 D O GLY 77 D GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc12 E RB RB . A RB 126 1_555 D O TYR 78 D TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? metalc ? metalc13 E RB RB . A RB 126 1_555 I O HOH . D HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc14 F RB RB . A RB 127 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.596 ? metalc ? metalc15 F RB RB . A RB 127 1_555 B O THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc16 F RB RB . A RB 127 1_555 B O VAL 76 B VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc17 F RB RB . A RB 127 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc18 F RB RB . A RB 127 1_555 C O VAL 76 C VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc19 F RB RB . A RB 127 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc20 F RB RB . A RB 127 1_555 D O VAL 76 D VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc21 F RB RB . A RB 127 1_555 I O HOH . D HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc22 G RB RB . A RB 128 1_555 B OG1 THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc23 G RB RB . A RB 128 1_555 B O THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc24 G RB RB . A RB 128 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc25 G RB RB . A RB 128 1_555 C OG1 THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc26 G RB RB . A RB 128 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc27 G RB RB . A RB 128 1_555 D OG1 THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JVM _atom_sites.fract_transf_matrix[1][1] 0.007704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005516 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RB A 1 126 1 RB RB . F 2 RB A 1 127 2 RB RB . G 2 RB A 1 128 3 RB RB . H 3 TBA A 1 129 1 TBA TEA . I 4 HOH D 1 806 806 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 68.503 _atom_site.Cartn_y 26.928 _atom_site.Cartn_z 9.291 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 126 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #