data_1JVM # _model_server_result.job_id '_HBngonfg8ctnwuu_dklFA' _model_server_result.datetime_utc '2024-11-05 23:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":129}' # _entry.id 1JVM # _exptl.entry_id 1JVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.464 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRABUTYLAMMONIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.6 _cell.angle_gamma 90 _cell.entry_id 1JVM _cell.length_a 129.8 _cell.length_b 69.4 _cell.length_c 112.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 129.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 75 A THR 75 1_555 F RB RB . A RB 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc2 A O THR 75 A THR 75 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc3 A OG1 THR 75 A THR 75 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc4 A O VAL 76 A VAL 76 1_555 F RB RB . A RB 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 A O GLY 77 A GLY 77 1_555 E RB RB . A RB 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc6 A O TYR 78 A TYR 78 1_555 E RB RB . A RB 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc7 E RB RB . A RB 126 1_555 B O GLY 77 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc8 E RB RB . A RB 126 1_555 B O TYR 78 B TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.271 ? metalc ? metalc9 E RB RB . A RB 126 1_555 C O GLY 77 C GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc10 E RB RB . A RB 126 1_555 C O TYR 78 C TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.312 ? metalc ? metalc11 E RB RB . A RB 126 1_555 D O GLY 77 D GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc12 E RB RB . A RB 126 1_555 D O TYR 78 D TYR 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? metalc ? metalc13 E RB RB . A RB 126 1_555 I O HOH . D HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc14 F RB RB . A RB 127 1_555 G RB RB . A RB 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.596 ? metalc ? metalc15 F RB RB . A RB 127 1_555 B O THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc16 F RB RB . A RB 127 1_555 B O VAL 76 B VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc17 F RB RB . A RB 127 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc18 F RB RB . A RB 127 1_555 C O VAL 76 C VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc19 F RB RB . A RB 127 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc20 F RB RB . A RB 127 1_555 D O VAL 76 D VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc21 F RB RB . A RB 127 1_555 I O HOH . D HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc22 G RB RB . A RB 128 1_555 B OG1 THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc23 G RB RB . A RB 128 1_555 B O THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc24 G RB RB . A RB 128 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc25 G RB RB . A RB 128 1_555 C OG1 THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc26 G RB RB . A RB 128 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc27 G RB RB . A RB 128 1_555 D OG1 THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? # _chem_comp.formula 'C16 H36 N 1' _chem_comp.formula_weight 242.464 _chem_comp.id TBA _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRABUTYLAMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C11 TBA sing 274 n n N1 C21 TBA sing 275 n n N1 C31 TBA sing 276 n n N1 C41 TBA sing 277 n n C11 C12 TBA sing 278 n n C11 H111 TBA sing 279 n n C11 H112 TBA sing 280 n n C12 C13 TBA sing 281 n n C12 H121 TBA sing 282 n n C12 H122 TBA sing 283 n n C21 C22 TBA sing 284 n n C21 H211 TBA sing 285 n n C21 H212 TBA sing 286 n n C22 C23 TBA sing 287 n n C22 H221 TBA sing 288 n n C22 H222 TBA sing 289 n n C31 C32 TBA sing 290 n n C31 H311 TBA sing 291 n n C31 H312 TBA sing 292 n n C32 C33 TBA sing 293 n n C32 H321 TBA sing 294 n n C32 H322 TBA sing 295 n n C41 C42 TBA sing 296 n n C41 H411 TBA sing 297 n n C41 H412 TBA sing 298 n n C42 C43 TBA sing 299 n n C42 H421 TBA sing 300 n n C42 H422 TBA sing 301 n n C13 C14 TBA sing 302 n n C13 H131 TBA sing 303 n n C13 H132 TBA sing 304 n n C14 H141 TBA sing 305 n n C14 H142 TBA sing 306 n n C14 H143 TBA sing 307 n n C23 C24 TBA sing 308 n n C23 H231 TBA sing 309 n n C23 H232 TBA sing 310 n n C24 H241 TBA sing 311 n n C24 H242 TBA sing 312 n n C24 H243 TBA sing 313 n n C33 C34 TBA sing 314 n n C33 H331 TBA sing 315 n n C33 H332 TBA sing 316 n n C34 H341 TBA sing 317 n n C34 H342 TBA sing 318 n n C34 H343 TBA sing 319 n n C43 C44 TBA sing 320 n n C43 H431 TBA sing 321 n n C43 H432 TBA sing 322 n n C44 H441 TBA sing 323 n n C44 H442 TBA sing 324 n n C44 H443 TBA sing 325 n n # _atom_sites.entry_id 1JVM _atom_sites.fract_transf_matrix[1][1] 0.007704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005516 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RB A 1 126 1 RB RB . F 2 RB A 1 127 2 RB RB . G 2 RB A 1 128 3 RB RB . H 3 TBA A 1 129 1 TBA TEA . I 4 HOH D 1 806 806 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TBA . . . H 3 72.786 26.897 23.103 1 89.2 ? N1 TBA 129 A 1 HETATM 2 C C11 TBA . . . H 3 73.18 28.381 22.727 1 84.06 ? C11 TBA 129 A 1 HETATM 3 C C12 TBA . . . H 3 74.701 28.679 22.711 1 80.79 ? C12 TBA 129 A 1 HETATM 4 C C21 TBA . . . H 3 73.672 26.028 22.092 1 83.71 ? C21 TBA 129 A 1 HETATM 5 C C22 TBA . . . H 3 73.488 24.473 22.217 1 76.58 ? C22 TBA 129 A 1 HETATM 6 C C31 TBA . . . H 3 71.239 26.755 23.192 1 90.08 ? C31 TBA 129 A 1 HETATM 7 C C32 TBA . . . H 3 70.377 27.839 24.023 1 91.47 ? C32 TBA 129 A 1 HETATM 8 C C41 TBA . . . H 3 73.405 26.586 24.553 1 95.15 ? C41 TBA 129 A 1 HETATM 9 C C42 TBA . . . H 3 72.99 27.41 25.937 1 100.95 ? C42 TBA 129 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #