data_1JVO # _model_server_result.job_id QxUo1qwxgmN8PnzI1Qt7EA _model_server_result.datetime_utc '2024-11-29 04:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":129}' # _entry.id 1JVO # _exptl.entry_id 1JVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JVO _cell.length_a 86.323 _cell.length_b 94.425 _cell.length_c 193.362 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JVO _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,O,P 1 1 E,F,G,H,Q,R,S,T 2 1 I,J,K,L,U,V,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 C SG CYS 3 C CYS 3 1_555 C SG CYS 26 C CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 42 C CYS 42 1_555 D SG CYS 42 D CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf6 D SG CYS 3 D CYS 3 1_555 D SG CYS 26 D CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 E SG CYS 3 E CYS 3 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 E SG CYS 42 E CYS 42 1_555 F SG CYS 42 F CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 F SG CYS 3 F CYS 3 1_555 F SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 G SG CYS 3 G CYS 3 1_555 G SG CYS 26 G CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 G SG CYS 42 G CYS 42 1_555 H SG CYS 42 H CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 H SG CYS 3 H CYS 3 1_555 H SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 I SG CYS 3 I CYS 3 1_555 I SG CYS 26 I CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 I SG CYS 42 I CYS 42 1_555 J SG CYS 42 J CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf15 J SG CYS 3 J CYS 3 1_555 J SG CYS 26 J CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 K SG CYS 3 K CYS 3 1_555 K SG CYS 26 K CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 K SG CYS 42 K CYS 42 1_555 L SG CYS 42 L CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf18 L SG CYS 3 L CYS 3 1_555 L SG CYS 26 L CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A ND1 HIS 46 A HIS 46 1_555 M CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A SG CYS 112 A CYS 112 1_555 M CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A ND1 HIS 117 A HIS 117 1_555 M CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 B ND1 HIS 46 B HIS 46 1_555 N CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 B SG CYS 112 B CYS 112 1_555 N CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc6 B ND1 HIS 117 B HIS 117 1_555 N CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc7 C ND1 HIS 46 C HIS 46 1_555 O CU CU . C CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc8 C SG CYS 112 C CYS 112 1_555 O CU CU . C CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 C ND1 HIS 117 C HIS 117 1_555 O CU CU . C CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc10 D ND1 HIS 46 D HIS 46 1_555 P CU CU . D CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 D SG CYS 112 D CYS 112 1_555 P CU CU . D CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc12 D ND1 HIS 117 D HIS 117 1_555 P CU CU . D CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc13 E O GLY 45 E GLY 45 1_555 Q CU CU . E CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc14 E ND1 HIS 46 E HIS 46 1_555 Q CU CU . E CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc15 E SG CYS 112 E CYS 112 1_555 Q CU CU . E CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc16 E ND1 HIS 117 E HIS 117 1_555 Q CU CU . E CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc17 F O GLY 45 F GLY 45 1_555 R CU CU . F CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc18 F ND1 HIS 46 F HIS 46 1_555 R CU CU . F CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc19 F SG CYS 112 F CYS 112 1_555 R CU CU . F CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc20 F ND1 HIS 117 F HIS 117 1_555 R CU CU . F CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc21 G ND1 HIS 46 G HIS 46 1_555 S CU CU . G CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc22 G SG CYS 112 G CYS 112 1_555 S CU CU . G CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc23 G ND1 HIS 117 G HIS 117 1_555 S CU CU . G CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc24 H ND1 HIS 46 H HIS 46 1_555 T CU CU . H CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc25 H SG CYS 112 H CYS 112 1_555 T CU CU . H CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc26 H ND1 HIS 117 H HIS 117 1_555 T CU CU . H CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc27 I O GLY 45 I GLY 45 1_555 U CU CU . I CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc28 I ND1 HIS 46 I HIS 46 1_555 U CU CU . I CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc29 I SG CYS 112 I CYS 112 1_555 U CU CU . I CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc30 I ND1 HIS 117 I HIS 117 1_555 U CU CU . I CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc31 J ND1 HIS 46 J HIS 46 1_555 V CU CU . J CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc32 J SG CYS 112 J CYS 112 1_555 V CU CU . J CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc33 J ND1 HIS 117 J HIS 117 1_555 V CU CU . J CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc34 K ND1 HIS 46 K HIS 46 1_555 W CU CU . K CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc35 K SG CYS 112 K CYS 112 1_555 W CU CU . K CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc36 K ND1 HIS 117 K HIS 117 1_555 W CU CU . K CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc37 L O GLY 45 L GLY 45 1_555 X CU CU . L CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc38 L ND1 HIS 46 L HIS 46 1_555 X CU CU . L CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc39 L SG CYS 112 L CYS 112 1_555 X CU CU . L CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc40 L ND1 HIS 117 L HIS 117 1_555 X CU CU . L CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JVO _atom_sites.fract_transf_matrix[1][1] 0.011584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 CU A 1 129 129 CU CU . N 2 CU B 1 129 129 CU CU . O 2 CU C 1 129 129 CU CU . P 2 CU D 1 129 129 CU CU . Q 2 CU E 1 129 129 CU CU . R 2 CU F 1 129 129 CU CU . S 2 CU G 1 129 129 CU CU . T 2 CU H 1 129 129 CU CU . U 2 CU I 1 129 129 CU CU . V 2 CU J 1 129 129 CU CU . W 2 CU K 1 129 129 CU CU . X 2 CU L 1 129 129 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.031 _atom_site.Cartn_y 24.427 _atom_site.Cartn_z 73.645 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 129 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 549 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #