data_1JVQ
#
_model_server_result.job_id            cVo9R3HAE-QTYET0hQ4u5g 
_model_server_result.datetime_utc      '2024-10-24 04:24:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jvq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":861}' 
#
_entry.id    1JVQ 
#
_exptl.entry_id    1JVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.42 
_cell.angle_gamma         90 
_cell.entry_id            1JVQ 
_cell.length_a            69.144 
_cell.length_b            100.622 
_cell.length_c            87.157 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JVQ 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 L CYS 8 1_555 A SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 21 L CYS 21 1_555 A SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 247 L CYS 247 1_555 A SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 8 I CYS 8 1_555 B SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 B SG CYS 21 I CYS 21 1_555 B SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 247 I CYS 247 1_555 B SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C C ACE 1 C ACE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 D C PHE 4 D PHE 12 1_555 D N NH2 5 D NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.244 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 243 n n 
C1 O1 NAG sing 244 n n 
C1 O5 NAG sing 245 n n 
C1 H1 NAG sing 246 n n 
C2 C3 NAG sing 247 n n 
C2 N2 NAG sing 248 n n 
C2 H2 NAG sing 249 n n 
C3 C4 NAG sing 250 n n 
C3 O3 NAG sing 251 n n 
C3 H3 NAG sing 252 n n 
C4 C5 NAG sing 253 n n 
C4 O4 NAG sing 254 n n 
C4 H4 NAG sing 255 n n 
C5 C6 NAG sing 256 n n 
C5 O5 NAG sing 257 n n 
C5 H5 NAG sing 258 n n 
C6 O6 NAG sing 259 n n 
C6 H61 NAG sing 260 n n 
C6 H62 NAG sing 261 n n 
C7 C8 NAG sing 262 n n 
C7 N2 NAG sing 263 n n 
C7 O7 NAG doub 264 n n 
C8 H81 NAG sing 265 n n 
C8 H82 NAG sing 266 n n 
C8 H83 NAG sing 267 n n 
N2 HN2 NAG sing 268 n n 
O1 HO1 NAG sing 269 n n 
O3 HO3 NAG sing 270 n n 
O4 HO4 NAG sing 271 n n 
O6 HO6 NAG sing 272 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1JVQ 
_atom_sites.fract_transf_matrix[1][1]    0.014463 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003719 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009938 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NDG L 1 801 801 NDG NAG . 
F 4 NDG L 1 841 841 NDG NAG . 
G 4 NDG L 1 842 842 NDG NAG . 
H 4 NDG L 1 861 861 NDG NAG . 
I 4 NDG I 1 801 801 NDG NAG . 
J 5 NAG I 1 841 841 NAG NAG . 
K 4 NDG I 1 842 842 NDG NAG . 
L 5 NAG I 1 861 861 NAG NAG . 
M 4 NDG I 1 862 862 NDG NAG . 
N 6 HOH L 1 862 2 HOH HOH . 
N 6 HOH L 2 863 4 HOH HOH . 
N 6 HOH L 3 864 8 HOH HOH . 
N 6 HOH L 4 865 15 HOH HOH . 
N 6 HOH L 5 866 17 HOH HOH . 
N 6 HOH L 6 867 21 HOH HOH . 
N 6 HOH L 7 868 22 HOH HOH . 
N 6 HOH L 8 869 31 HOH HOH . 
N 6 HOH L 9 870 32 HOH HOH . 
N 6 HOH L 10 871 36 HOH HOH . 
N 6 HOH L 11 872 37 HOH HOH . 
N 6 HOH L 12 873 41 HOH HOH . 
N 6 HOH L 13 874 42 HOH HOH . 
N 6 HOH L 14 875 45 HOH HOH . 
O 6 HOH I 1 863 1 HOH HOH . 
O 6 HOH I 2 864 3 HOH HOH . 
O 6 HOH I 3 865 5 HOH HOH . 
O 6 HOH I 4 866 6 HOH HOH . 
O 6 HOH I 5 867 7 HOH HOH . 
O 6 HOH I 6 868 9 HOH HOH . 
O 6 HOH I 7 869 10 HOH HOH . 
O 6 HOH I 8 870 11 HOH HOH . 
O 6 HOH I 9 871 12 HOH HOH . 
O 6 HOH I 10 872 13 HOH HOH . 
O 6 HOH I 11 873 14 HOH HOH . 
O 6 HOH I 12 874 16 HOH HOH . 
O 6 HOH I 13 875 18 HOH HOH . 
O 6 HOH I 14 876 19 HOH HOH . 
O 6 HOH I 15 877 20 HOH HOH . 
O 6 HOH I 16 878 23 HOH HOH . 
O 6 HOH I 17 879 25 HOH HOH . 
O 6 HOH I 18 880 26 HOH HOH . 
O 6 HOH I 19 881 27 HOH HOH . 
O 6 HOH I 20 882 29 HOH HOH . 
O 6 HOH I 21 883 30 HOH HOH . 
O 6 HOH I 22 884 33 HOH HOH . 
O 6 HOH I 23 885 34 HOH HOH . 
O 6 HOH I 24 886 35 HOH HOH . 
O 6 HOH I 25 887 39 HOH HOH . 
O 6 HOH I 26 888 40 HOH HOH . 
O 6 HOH I 27 889 43 HOH HOH . 
O 6 HOH I 28 890 44 HOH HOH . 
O 6 HOH I 29 891 46 HOH HOH . 
O 6 HOH I 30 892 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 5 21.47 19.429 1.543 1 104.14 ? C1 NAG 861 I 1 
HETATM 2 C C2 NAG . . . L 5 20.403 19.899 0.566 1 109.82 ? C2 NAG 861 I 1 
HETATM 3 C C3 NAG . . . L 5 21.107 20.591 -0.599 1 115.46 ? C3 NAG 861 I 1 
HETATM 4 C C4 NAG . . . L 5 22.051 21.696 -0.102 1 119.5 ? C4 NAG 861 I 1 
HETATM 5 C C5 NAG . . . L 5 22.918 21.25 1.068 1 114.97 ? C5 NAG 861 I 1 
HETATM 6 C C6 NAG . . . L 5 23.589 22.426 1.747 1 114.06 ? C6 NAG 861 I 1 
HETATM 7 C C7 NAG . . . L 5 18.262 18.933 0.017 1 112.99 ? C7 NAG 861 I 1 
HETATM 8 C C8 NAG . . . L 5 17.66 19.072 -1.375 1 112.86 ? C8 NAG 861 I 1 
HETATM 9 N N2 NAG . . . L 5 19.586 18.79 0.102 1 110.25 ? N2 NAG 861 I 1 
HETATM 10 O O1 NAG . . . L 5 20.897 18.732 2.596 1 40.16 ? O1 NAG 861 I 1 
HETATM 11 O O3 NAG . . . L 5 20.139 21.163 -1.466 1 118.08 ? O3 NAG 861 I 1 
HETATM 12 O O4 NAG . . . L 5 22.909 22.077 -1.16 1 127.43 ? O4 NAG 861 I 1 
HETATM 13 O O5 NAG . . . L 5 22.126 20.581 2.068 1 109.85 ? O5 NAG 861 I 1 
HETATM 14 O O6 NAG . . . L 5 24.001 23.399 0.8 1 111.59 ? O6 NAG 861 I 1 
HETATM 15 O O7 NAG . . . L 5 17.526 18.967 1.008 1 115.49 ? O7 NAG 861 I 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#