data_1JVU
#
_model_server_result.job_id            jGhI43UDXuaTV81r5FkUWQ 
_model_server_result.datetime_utc      '2024-11-16 06:50:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jvu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":130}' 
#
_entry.id    1JVU 
#
_exptl.entry_id    1JVU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-2'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.9 
_cell.angle_gamma         90 
_cell.entry_id            1JVU 
_cell.length_a            101.08 
_cell.length_b            33.43 
_cell.length_c            73.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JVU 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C9 H14 N3 O8 P' 
_chem_comp.formula_weight    323.197 
_chem_comp.id                C2P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-2'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 C2P sing 70 n n 
N1 C6 C2P sing 71 n n 
N1 C1' C2P sing 72 n n 
C2 N3 C2P sing 73 n n 
C2 O2 C2P doub 74 n n 
N3 C4 C2P doub 75 n n 
C4 C5 C2P sing 76 n n 
C4 N4 C2P sing 77 n n 
C5 C6 C2P doub 78 n n 
C5 H5 C2P sing 79 n n 
C6 H6 C2P sing 80 n n 
N4 HN41 C2P sing 81 n n 
N4 HN42 C2P sing 82 n n 
C1' C2' C2P sing 83 n n 
C1' O4' C2P sing 84 n n 
C1' H1' C2P sing 85 n n 
C2' O2' C2P sing 86 n n 
C2' C3' C2P sing 87 n n 
C2' H2' C2P sing 88 n n 
O2' P C2P sing 89 n n 
C3' C4' C2P sing 90 n n 
C3' O3' C2P sing 91 n n 
C3' H3' C2P sing 92 n n 
C4' O4' C2P sing 93 n n 
C4' C5' C2P sing 94 n n 
C4' H4' C2P sing 95 n n 
O3' HO3' C2P sing 96 n n 
C5' O5' C2P sing 97 n n 
C5' "H5'1" C2P sing 98 n n 
C5' "H5'2" C2P sing 99 n n 
O5' HO5' C2P sing 100 n n 
P O1P C2P doub 101 n n 
P O2P C2P sing 102 n n 
P O3P C2P sing 103 n n 
O2P HOP2 C2P sing 104 n n 
O3P HOP3 C2P sing 105 n n 
#
_atom_sites.entry_id                     1JVU 
_atom_sites.fract_transf_matrix[1][1]    0.00989 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00016 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02991 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C2P A 1 130 130 C2P C2P . 
D 3 HOH A 1 212 212 HOH HOH . 
D 3 HOH A 2 216 216 HOH HOH . 
D 3 HOH A 3 223 223 HOH HOH . 
D 3 HOH A 4 231 231 HOH HOH . 
D 3 HOH A 5 233 233 HOH HOH . 
D 3 HOH A 6 235 235 HOH HOH . 
D 3 HOH A 7 237 237 HOH HOH . 
D 3 HOH A 8 240 240 HOH HOH . 
D 3 HOH A 9 241 241 HOH HOH . 
D 3 HOH A 10 242 242 HOH HOH . 
D 3 HOH A 11 243 243 HOH HOH . 
D 3 HOH A 12 244 244 HOH HOH . 
D 3 HOH A 13 245 245 HOH HOH . 
D 3 HOH A 14 248 248 HOH HOH . 
D 3 HOH A 15 249 249 HOH HOH . 
D 3 HOH A 16 250 250 HOH HOH . 
D 3 HOH A 17 271 271 HOH HOH . 
D 3 HOH A 18 275 275 HOH HOH . 
D 3 HOH A 19 276 276 HOH HOH . 
D 3 HOH A 20 279 279 HOH HOH . 
D 3 HOH A 21 282 282 HOH HOH . 
D 3 HOH A 22 285 285 HOH HOH . 
D 3 HOH A 23 286 286 HOH HOH . 
D 3 HOH A 24 289 289 HOH HOH . 
D 3 HOH A 25 290 290 HOH HOH . 
D 3 HOH A 26 292 292 HOH HOH . 
D 3 HOH A 27 296 296 HOH HOH . 
D 3 HOH A 28 298 298 HOH HOH . 
D 3 HOH A 29 300 300 HOH HOH . 
D 3 HOH A 30 302 302 HOH HOH . 
D 3 HOH A 31 307 307 HOH HOH . 
D 3 HOH A 32 310 310 HOH HOH . 
D 3 HOH A 33 311 311 HOH HOH . 
D 3 HOH A 34 314 314 HOH HOH . 
D 3 HOH A 35 317 317 HOH HOH . 
D 3 HOH A 36 318 318 HOH HOH . 
D 3 HOH A 37 326 326 HOH HOH . 
E 3 HOH B 1 201 201 HOH HOH . 
E 3 HOH B 2 202 202 HOH HOH . 
E 3 HOH B 3 203 203 HOH HOH . 
E 3 HOH B 4 205 205 HOH HOH . 
E 3 HOH B 5 206 206 HOH HOH . 
E 3 HOH B 6 207 207 HOH HOH . 
E 3 HOH B 7 208 208 HOH HOH . 
E 3 HOH B 8 209 209 HOH HOH . 
E 3 HOH B 9 210 210 HOH HOH . 
E 3 HOH B 10 211 211 HOH HOH . 
E 3 HOH B 11 215 215 HOH HOH . 
E 3 HOH B 12 217 217 HOH HOH . 
E 3 HOH B 13 219 219 HOH HOH . 
E 3 HOH B 14 221 221 HOH HOH . 
E 3 HOH B 15 222 222 HOH HOH . 
E 3 HOH B 16 225 225 HOH HOH . 
E 3 HOH B 17 226 226 HOH HOH . 
E 3 HOH B 18 229 229 HOH HOH . 
E 3 HOH B 19 252 252 HOH HOH . 
E 3 HOH B 20 253 253 HOH HOH . 
E 3 HOH B 21 255 255 HOH HOH . 
E 3 HOH B 22 256 256 HOH HOH . 
E 3 HOH B 23 258 258 HOH HOH . 
E 3 HOH B 24 260 260 HOH HOH . 
E 3 HOH B 25 261 261 HOH HOH . 
E 3 HOH B 26 262 262 HOH HOH . 
E 3 HOH B 27 263 263 HOH HOH . 
E 3 HOH B 28 264 264 HOH HOH . 
E 3 HOH B 29 266 266 HOH HOH . 
E 3 HOH B 30 269 269 HOH HOH . 
E 3 HOH B 31 284 284 HOH HOH . 
E 3 HOH B 32 287 287 HOH HOH . 
E 3 HOH B 33 288 288 HOH HOH . 
E 3 HOH B 34 291 291 HOH HOH . 
E 3 HOH B 35 293 293 HOH HOH . 
E 3 HOH B 36 295 295 HOH HOH . 
E 3 HOH B 37 297 297 HOH HOH . 
E 3 HOH B 38 303 303 HOH HOH . 
E 3 HOH B 39 305 305 HOH HOH . 
E 3 HOH B 40 306 306 HOH HOH . 
E 3 HOH B 41 309 309 HOH HOH . 
E 3 HOH B 42 313 313 HOH HOH . 
E 3 HOH B 43 315 315 HOH HOH . 
E 3 HOH B 44 316 316 HOH HOH . 
E 3 HOH B 45 319 319 HOH HOH . 
E 3 HOH B 46 323 323 HOH HOH . 
E 3 HOH B 47 325 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 C2P . . . C 2 36.216 2.125 24.718 1 25.63 ? N1 C2P 130 A 1 
HETATM 2 C C2 C2P . . . C 2 35.012 2.333 25.403 1 21.54 ? C2 C2P 130 A 1 
HETATM 3 N N3 C2P . . . C 2 34.366 3.525 25.27 1 22.06 ? N3 C2P 130 A 1 
HETATM 4 C C4 C2P . . . C 2 34.869 4.471 24.465 1 24.34 ? C4 C2P 130 A 1 
HETATM 5 C C5 C2P . . . C 2 36.082 4.262 23.72 1 26.92 ? C5 C2P 130 A 1 
HETATM 6 C C6 C2P . . . C 2 36.715 3.085 23.876 1 25.48 ? C6 C2P 130 A 1 
HETATM 7 O O2 C2P . . . C 2 34.562 1.414 26.115 1 20.33 ? O2 C2P 130 A 1 
HETATM 8 N N4 C2P . . . C 2 34.218 5.624 24.381 1 23.74 ? N4 C2P 130 A 1 
HETATM 9 C C1' C2P . . . C 2 36.938 0.865 24.936 1 32.32 ? C1' C2P 130 A 1 
HETATM 10 C C2' C2P . . . C 2 36.824 -0.136 23.777 1 34.28 ? C2' C2P 130 A 1 
HETATM 11 O O2' C2P . . . C 2 36.781 -1.388 24.462 1 39.7 ? O2' C2P 130 A 1 
HETATM 12 C C3' C2P . . . C 2 38.061 0.243 22.97 1 32.63 ? C3' C2P 130 A 1 
HETATM 13 C C4' C2P . . . C 2 39.081 0.472 24.068 1 37.39 ? C4' C2P 130 A 1 
HETATM 14 O O4' C2P . . . C 2 38.316 1.171 25.091 1 34.63 ? O4' C2P 130 A 1 
HETATM 15 O O3' C2P . . . C 2 38.499 -0.738 22.065 1 31.85 ? O3' C2P 130 A 1 
HETATM 16 C C5' C2P . . . C 2 40.267 1.294 23.654 1 41.85 ? C5' C2P 130 A 1 
HETATM 17 O O5' C2P . . . C 2 39.832 2.405 22.851 1 52.43 ? O5' C2P 130 A 1 
HETATM 18 P P C2P . . . C 2 36.589 -2.795 23.653 1 42.24 ? P C2P 130 A 1 
HETATM 19 O O1P C2P . . . C 2 35.102 -2.851 23.444 1 34.69 ? O1P C2P 130 A 1 
HETATM 20 O O2P C2P . . . C 2 37.29 -3.897 24.379 1 47.69 ? O2P C2P 130 A 1 
HETATM 21 O O3P C2P . . . C 2 37.264 -2.633 22.223 1 43.96 ? O3P C2P 130 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#