data_1JWB # _model_server_result.job_id vhjpBmCxCdvknU9OwgtBbg _model_server_result.datetime_utc '2024-10-17 05:33:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":82}' # _entry.id 1JWB # _exptl.entry_id 1JWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JWB _cell.length_a 77.23 _cell.length_b 77.23 _cell.length_c 100.545 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 77.23 77.23 50.2725 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 172 B CYS 172 1_555 C ZN ZN . B ZN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A SG CYS 175 B CYS 175 1_555 C ZN ZN . B ZN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc3 A SG CYS 244 B CYS 244 1_555 C ZN ZN . B ZN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A SG CYS 247 B CYS 247 1_555 C ZN ZN . B ZN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? covale ? covale1 B C GLY 81 D GLY 81 1_555 E O1P AMP . D AMP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JWB _atom_sites.fract_transf_matrix[1][1] 0.012948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN B 1 250 1 ZN ZN . D 4 SO4 B 1 251 3 SO4 SO4 . E 5 AMP D 1 82 2 AMP AMP . F 6 HOH B 1 252 6 HOH WAT . F 6 HOH B 2 253 7 HOH WAT . F 6 HOH B 3 254 8 HOH WAT . F 6 HOH B 4 255 11 HOH WAT . F 6 HOH B 5 256 13 HOH WAT . F 6 HOH B 6 257 14 HOH WAT . F 6 HOH B 7 258 15 HOH WAT . F 6 HOH B 8 259 18 HOH WAT . F 6 HOH B 9 260 19 HOH WAT . F 6 HOH B 10 261 23 HOH WAT . F 6 HOH B 11 262 25 HOH WAT . F 6 HOH B 12 263 26 HOH WAT . F 6 HOH B 13 264 27 HOH WAT . F 6 HOH B 14 265 28 HOH WAT . F 6 HOH B 15 266 29 HOH WAT . F 6 HOH B 16 267 30 HOH WAT . F 6 HOH B 17 268 31 HOH WAT . F 6 HOH B 18 269 32 HOH WAT . F 6 HOH B 19 270 33 HOH WAT . F 6 HOH B 20 271 34 HOH WAT . F 6 HOH B 21 272 35 HOH WAT . F 6 HOH B 22 273 36 HOH WAT . F 6 HOH B 23 274 38 HOH WAT . F 6 HOH B 24 275 39 HOH WAT . F 6 HOH B 25 276 40 HOH WAT . F 6 HOH B 26 277 41 HOH WAT . F 6 HOH B 27 278 42 HOH WAT . F 6 HOH B 28 279 43 HOH WAT . F 6 HOH B 29 280 44 HOH WAT . F 6 HOH B 30 281 45 HOH WAT . F 6 HOH B 31 282 48 HOH WAT . F 6 HOH B 32 283 49 HOH WAT . F 6 HOH B 33 284 51 HOH WAT . F 6 HOH B 34 285 53 HOH WAT . F 6 HOH B 35 286 54 HOH WAT . F 6 HOH B 36 287 55 HOH WAT . F 6 HOH B 37 288 56 HOH WAT . F 6 HOH B 38 289 57 HOH WAT . F 6 HOH B 39 290 58 HOH WAT . F 6 HOH B 40 291 60 HOH WAT . F 6 HOH B 41 292 61 HOH WAT . F 6 HOH B 42 293 62 HOH WAT . F 6 HOH B 43 294 64 HOH WAT . F 6 HOH B 44 295 65 HOH WAT . F 6 HOH B 45 296 66 HOH WAT . F 6 HOH B 46 297 67 HOH WAT . F 6 HOH B 47 298 68 HOH WAT . F 6 HOH B 48 299 69 HOH WAT . F 6 HOH B 49 300 70 HOH WAT . F 6 HOH B 50 301 71 HOH WAT . F 6 HOH B 51 302 72 HOH WAT . F 6 HOH B 52 303 73 HOH WAT . F 6 HOH B 53 304 74 HOH WAT . F 6 HOH B 54 305 75 HOH WAT . F 6 HOH B 55 306 76 HOH WAT . F 6 HOH B 56 307 77 HOH WAT . F 6 HOH B 57 308 79 HOH WAT . F 6 HOH B 58 309 80 HOH WAT . F 6 HOH B 59 310 81 HOH WAT . F 6 HOH B 60 311 82 HOH WAT . F 6 HOH B 61 312 83 HOH WAT . F 6 HOH B 62 313 84 HOH WAT . F 6 HOH B 63 314 85 HOH WAT . F 6 HOH B 64 315 86 HOH WAT . F 6 HOH B 65 316 87 HOH WAT . F 6 HOH B 66 317 88 HOH WAT . F 6 HOH B 67 318 89 HOH WAT . F 6 HOH B 68 319 92 HOH WAT . F 6 HOH B 69 320 93 HOH WAT . F 6 HOH B 70 321 94 HOH WAT . F 6 HOH B 71 322 95 HOH WAT . F 6 HOH B 72 323 96 HOH WAT . F 6 HOH B 73 324 98 HOH WAT . F 6 HOH B 74 325 99 HOH WAT . F 6 HOH B 75 326 100 HOH WAT . F 6 HOH B 76 327 101 HOH WAT . F 6 HOH B 77 328 102 HOH WAT . F 6 HOH B 78 329 107 HOH WAT . F 6 HOH B 79 330 108 HOH WAT . F 6 HOH B 80 331 110 HOH WAT . F 6 HOH B 81 332 112 HOH WAT . F 6 HOH B 82 333 113 HOH WAT . F 6 HOH B 83 334 114 HOH WAT . F 6 HOH B 84 335 116 HOH WAT . F 6 HOH B 85 336 117 HOH WAT . F 6 HOH B 86 337 119 HOH WAT . F 6 HOH B 87 338 121 HOH WAT . F 6 HOH B 88 339 122 HOH WAT . F 6 HOH B 89 340 123 HOH WAT . F 6 HOH B 90 341 125 HOH WAT . F 6 HOH B 91 342 126 HOH WAT . F 6 HOH B 92 343 127 HOH WAT . F 6 HOH B 93 344 128 HOH WAT . F 6 HOH B 94 345 129 HOH WAT . F 6 HOH B 95 346 131 HOH WAT . F 6 HOH B 96 347 132 HOH WAT . F 6 HOH B 97 348 134 HOH WAT . F 6 HOH B 98 349 135 HOH WAT . F 6 HOH B 99 350 136 HOH WAT . F 6 HOH B 100 351 137 HOH WAT . F 6 HOH B 101 352 138 HOH WAT . F 6 HOH B 102 353 139 HOH WAT . F 6 HOH B 103 354 140 HOH WAT . F 6 HOH B 104 355 142 HOH WAT . F 6 HOH B 105 356 143 HOH WAT . F 6 HOH B 106 357 144 HOH WAT . F 6 HOH B 107 358 145 HOH WAT . G 6 HOH D 1 83 5 HOH WAT . G 6 HOH D 2 84 16 HOH WAT . G 6 HOH D 3 85 20 HOH WAT . G 6 HOH D 4 86 22 HOH WAT . G 6 HOH D 5 87 24 HOH WAT . G 6 HOH D 6 88 37 HOH WAT . G 6 HOH D 7 89 46 HOH WAT . G 6 HOH D 8 90 47 HOH WAT . G 6 HOH D 9 91 50 HOH WAT . G 6 HOH D 10 92 52 HOH WAT . G 6 HOH D 11 93 59 HOH WAT . G 6 HOH D 12 94 63 HOH WAT . G 6 HOH D 13 95 78 HOH WAT . G 6 HOH D 14 96 90 HOH WAT . G 6 HOH D 15 97 91 HOH WAT . G 6 HOH D 16 98 97 HOH WAT . G 6 HOH D 17 99 103 HOH WAT . G 6 HOH D 18 100 104 HOH WAT . G 6 HOH D 19 101 105 HOH WAT . G 6 HOH D 20 102 109 HOH WAT . G 6 HOH D 21 103 111 HOH WAT . G 6 HOH D 22 104 118 HOH WAT . G 6 HOH D 23 105 120 HOH WAT . G 6 HOH D 24 106 124 HOH WAT . G 6 HOH D 25 107 130 HOH WAT . G 6 HOH D 26 108 133 HOH WAT . G 6 HOH D 27 109 141 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 5 36.652 22.765 17.803 1 27.31 ? P AMP 82 D 1 HETATM 2 O O1P AMP . . . E 5 35.58 23.728 17.894 1 36.52 ? O1P AMP 82 D 1 HETATM 3 O O2P AMP . . . E 5 36.301 21.876 16.61 1 21.99 ? O2P AMP 82 D 1 HETATM 4 O O3P AMP . . . E 5 37.948 23.576 17.699 1 22.07 ? O3P AMP 82 D 1 HETATM 5 O O5' AMP . . . E 5 36.564 22.002 19.204 1 27.13 ? O5' AMP 82 D 1 HETATM 6 C C5' AMP . . . E 5 35.408 21.299 19.587 1 20.29 ? C5' AMP 82 D 1 HETATM 7 C C4' AMP . . . E 5 35.905 19.995 20.17 1 22.75 ? C4' AMP 82 D 1 HETATM 8 O O4' AMP . . . E 5 34.736 19.469 20.678 1 24.55 ? O4' AMP 82 D 1 HETATM 9 C C3' AMP . . . E 5 36.451 18.951 19.225 1 22.37 ? C3' AMP 82 D 1 HETATM 10 O O3' AMP . . . E 5 37.779 18.729 19.461 1 21.37 ? O3' AMP 82 D 1 HETATM 11 C C2' AMP . . . E 5 35.363 17.916 19.066 1 25.76 ? C2' AMP 82 D 1 HETATM 12 O O2' AMP . . . E 5 35.952 16.643 18.863 1 22.19 ? O2' AMP 82 D 1 HETATM 13 C C1' AMP . . . E 5 34.732 18.095 20.431 1 24.36 ? C1' AMP 82 D 1 HETATM 14 N N9 AMP . . . E 5 33.397 17.496 20.555 1 25.31 ? N9 AMP 82 D 1 HETATM 15 C C8 AMP . . . E 5 32.306 17.682 19.787 1 23.74 ? C8 AMP 82 D 1 HETATM 16 N N7 AMP . . . E 5 31.322 16.902 20.275 1 30.69 ? N7 AMP 82 D 1 HETATM 17 C C5 AMP . . . E 5 31.801 16.21 21.338 1 27.65 ? C5 AMP 82 D 1 HETATM 18 C C6 AMP . . . E 5 31.225 15.259 22.166 1 29.99 ? C6 AMP 82 D 1 HETATM 19 N N6 AMP . . . E 5 29.969 14.875 21.985 1 23.87 ? N6 AMP 82 D 1 HETATM 20 N N1 AMP . . . E 5 31.988 14.761 23.19 1 39.36 ? N1 AMP 82 D 1 HETATM 21 C C2 AMP . . . E 5 33.32 15.169 23.355 1 38.52 ? C2 AMP 82 D 1 HETATM 22 N N3 AMP . . . E 5 33.875 16.092 22.504 1 29.2 ? N3 AMP 82 D 1 HETATM 23 C C4 AMP . . . E 5 33.103 16.595 21.528 1 22.4 ? C4 AMP 82 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #