data_1JWT # _model_server_result.job_id yDGoQEiLHGsAfuVEzZajnQ _model_server_result.datetime_utc '2024-11-21 17:08:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1JWT # _exptl.entry_id 1JWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.99 _cell.angle_gamma 90 _cell.entry_id 1JWT _cell.length_a 71.54 _cell.length_b 72.18 _cell.length_c 73.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf2 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 209 A CYS 203 1_555 A SG CYS 223 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf4 A SG CYS 237 A CYS 231 1_555 A SG CYS 267 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C22 H32 N6 O5 S' _chem_comp.formula_weight 492.592 _chem_comp.id BLI _chem_comp.mon_nstd_flag . _chem_comp.name '4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 BLI sing 70 n n N1 C5 BLI sing 71 n n N1 C01 BLI sing 72 n n C1 C2 BLI sing 73 n n C1 C06 BLI sing 74 n n C1 H11 BLI sing 75 n n C2 N3 BLI sing 76 n n C2 H21 BLI sing 77 n n C2 H22 BLI sing 78 n n N3 C4 BLI sing 79 n n N3 S1 BLI sing 80 n n C4 C5 BLI sing 81 n n C4 H41 BLI sing 82 n n C4 H42 BLI sing 83 n n C5 O11 BLI doub 84 n n C01 C09 BLI sing 85 n n C01 C03 BLI sing 86 n n C01 H011 BLI sing 87 n n C09 O09 BLI doub 88 n n C09 N10 BLI sing 89 n n N10 C1' BLI sing 90 n n N10 H101 BLI sing 91 n n C03 C06 BLI sing 92 n n C03 H031 BLI sing 93 n n C03 H032 BLI sing 94 n n C06 H061 BLI sing 95 n n C06 H062 BLI sing 96 n n S1 O2 BLI doub 97 n n S1 C02 BLI sing 98 n n S1 O1 BLI doub 99 n n C02 C6B BLI sing 100 n n C02 H021 BLI sing 101 n n C02 H022 BLI sing 102 n n C1' C2' BLI sing 103 n n C1' "H1'1" BLI sing 104 n n C1' "H1'2" BLI sing 105 n n C2' C3' BLI sing 106 n n C2' C4' BLI sing 107 n n C2' "H2'1" BLI sing 108 n n C3' C7' BLI sing 109 n n C3' "H3'1" BLI sing 110 n n C3' "H3'2" BLI sing 111 n n C7' N1' BLI sing 112 n n C7' "H7'1" BLI sing 113 n n C7' "H7'2" BLI sing 114 n n C4' C5' BLI sing 115 n n C4' "H4'1" BLI sing 116 n n C4' "H4'2" BLI sing 117 n n C5' N1' BLI sing 118 n n C5' "H5'1" BLI sing 119 n n C5' "H5'2" BLI sing 120 n n N1' C6' BLI sing 121 n n C6' N2' BLI sing 122 n n C6' N3' BLI doub 123 z n N2' HN21 BLI sing 124 n n N2' HN22 BLI sing 125 n n N3' O3' BLI sing 126 n n O3' HO31 BLI sing 127 n n C6B C1B BLI doub 128 n y C6B C5B BLI sing 129 n y C1B C2B BLI sing 130 n y C1B H1A1 BLI sing 131 n n C2B C3B BLI doub 132 n y C2B H2A1 BLI sing 133 n n C3B C4B BLI sing 134 n y C3B H3A1 BLI sing 135 n n C4B C5B BLI doub 136 n y C4B H4A1 BLI sing 137 n n C5B H5A1 BLI sing 138 n n # _atom_sites.entry_id 1JWT _atom_sites.fract_transf_matrix[1][1] 0.013978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002715 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id BLI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id BLI _pdbx_nonpoly_scheme.auth_mon_id PIP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BLI . . . B 2 17.735 -13.996 22.235 1 21.24 ? N1 BLI 300 A 1 HETATM 2 C C1 BLI . . . B 2 18.821 -14.648 21.529 1 21.5 ? C1 BLI 300 A 1 HETATM 3 C C2 BLI . . . B 2 19.785 -15.363 22.463 1 19.58 ? C2 BLI 300 A 1 HETATM 4 N N3 BLI . . . B 2 19.068 -16.2 23.419 1 18.95 ? N3 BLI 300 A 1 HETATM 5 C C4 BLI . . . B 2 17.627 -15.966 23.579 1 20.66 ? C4 BLI 300 A 1 HETATM 6 C C5 BLI . . . B 2 17.171 -14.524 23.325 1 22.3 ? C5 BLI 300 A 1 HETATM 7 O O11 BLI . . . B 2 16.334 -13.94 24.023 1 24.83 ? O11 BLI 300 A 1 HETATM 8 C C01 BLI . . . B 2 17.186 -12.834 21.538 1 21.82 ? C01 BLI 300 A 1 HETATM 9 C C09 BLI . . . B 2 15.642 -12.958 21.239 1 20.73 ? C09 BLI 300 A 1 HETATM 10 O O09 BLI . . . B 2 15.083 -14.022 21.413 1 22.38 ? O09 BLI 300 A 1 HETATM 11 N N10 BLI . . . B 2 14.984 -11.857 20.801 1 18.35 ? N10 BLI 300 A 1 HETATM 12 C C03 BLI . . . B 2 18.092 -12.775 20.282 1 22.76 ? C03 BLI 300 A 1 HETATM 13 C C06 BLI . . . B 2 19.381 -13.508 20.681 1 22.17 ? C06 BLI 300 A 1 HETATM 14 S S1 BLI . . . B 2 19.642 -17.79 23.803 1 19.14 ? S1 BLI 300 A 1 HETATM 15 O O2 BLI . . . B 2 19.908 -18.402 22.511 1 22.84 ? O2 BLI 300 A 1 HETATM 16 C C02 BLI . . . B 2 21.235 -17.576 24.622 1 18.61 ? C02 BLI 300 A 1 HETATM 17 O O1 BLI . . . B 2 18.642 -18.324 24.648 1 16.84 ? O1 BLI 300 A 1 HETATM 18 C C1' BLI . . . B 2 13.569 -11.931 20.464 1 14.59 ? C1' BLI 300 A 1 HETATM 19 C C2' BLI . . . B 2 12.844 -11.954 21.78 1 11.2 ? C2' BLI 300 A 1 HETATM 20 C C3' BLI . . . B 2 11.943 -10.747 21.903 1 10.33 ? C3' BLI 300 A 1 HETATM 21 C C7' BLI . . . B 2 11.378 -10.711 23.313 1 9.37 ? C7' BLI 300 A 1 HETATM 22 C C4' BLI . . . B 2 12.054 -13.241 21.971 1 8.9 ? C4' BLI 300 A 1 HETATM 23 C C5' BLI . . . B 2 11.482 -13.218 23.389 1 8.29 ? C5' BLI 300 A 1 HETATM 24 N N1' BLI . . . B 2 10.782 -11.975 23.758 1 7.67 ? N1' BLI 300 A 1 HETATM 25 C C6' BLI . . . B 2 10.452 -11.881 25.114 1 7.69 ? C6' BLI 300 A 1 HETATM 26 N N2' BLI . . . B 2 9.871 -12.869 25.67 1 8.14 ? N2' BLI 300 A 1 HETATM 27 N N3' BLI . . . B 2 10.695 -10.801 25.888 1 11.28 ? N3' BLI 300 A 1 HETATM 28 O O3' BLI . . . B 2 10.313 -9.437 25.698 1 14.59 ? O3' BLI 300 A 1 HETATM 29 C C6B BLI . . . B 2 21.217 -16.467 25.631 1 16.12 ? C6B BLI 300 A 1 HETATM 30 C C1B BLI . . . B 2 22.183 -15.471 25.622 1 14.5 ? C1B BLI 300 A 1 HETATM 31 C C2B BLI . . . B 2 21.91 -14.286 26.262 1 13.7 ? C2B BLI 300 A 1 HETATM 32 C C3B BLI . . . B 2 20.722 -14.148 26.954 1 15.32 ? C3B BLI 300 A 1 HETATM 33 C C4B BLI . . . B 2 19.859 -15.221 27.125 1 15.27 ? C4B BLI 300 A 1 HETATM 34 C C5B BLI . . . B 2 20.135 -16.401 26.496 1 15.91 ? C5B BLI 300 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 34 #