data_1JX0 # _model_server_result.job_id Ad12WuRzKe1aHgghnGegvw _model_server_result.datetime_utc '2024-10-12 09:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 1JX0 # _exptl.entry_id 1JX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JX0 _cell.length_a 89.56 _cell.length_b 89.56 _cell.length_c 351.66 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1,2 A,B,C,D,E,F,G,H,I 4 1 A,C,D,E,F,H 5 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.78 77.561235 58.61 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 O4' _chem_comp.formula_weight 256.253 _chem_comp.id DFV _chem_comp.mon_nstd_flag . _chem_comp.name 7-HYDROXY-2-(4-HYDROXY-PHENYL)-CHROMAN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-DEOXYFLAVANONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DFV doub 83 n y C1 C6 DFV sing 84 n y C1 O3 DFV sing 85 n n C2 C3 DFV sing 86 n y C2 H2 DFV sing 87 n n C3 C4 DFV doub 88 n y C3 H3 DFV sing 89 n n C4 C5 DFV sing 90 n y C4 C7 DFV sing 91 n n C5 C6 DFV doub 92 n y C5 O1 DFV sing 93 n n C6 H6 DFV sing 94 n n C7 C8 DFV sing 95 n n C7 O2 DFV doub 96 n n C8 C9 DFV sing 97 n n C8 H81 DFV sing 98 n n C8 H82 DFV sing 99 n n C9 O1 DFV sing 100 n n C9 C10 DFV sing 101 n n C9 H9 DFV sing 102 n n C10 C11 DFV doub 103 n y C10 C15 DFV sing 104 n y C11 C12 DFV sing 105 n y C11 H11 DFV sing 106 n n C12 C13 DFV doub 107 n y C12 H12 DFV sing 108 n n C13 C14 DFV sing 109 n y C13 O4 DFV sing 110 n n C14 C15 DFV doub 111 n y C14 H14 DFV sing 112 n n C15 H15 DFV sing 113 n n O3 HO3 DFV sing 114 n n O4 HO4 DFV sing 115 n n # _atom_sites.entry_id 1JX0 _atom_sites.fract_transf_matrix[1][1] 0.011166 _atom_sites.fract_transf_matrix[1][2] 0.006447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 602 602 SO4 SO4 . D 2 SO4 A 1 603 603 SO4 SO4 . E 2 SO4 A 1 604 604 SO4 SO4 . F 3 DFV A 1 501 501 DFV DFV . G 2 SO4 B 1 601 601 SO4 SO4 . H 4 HOH A 1 605 1 HOH HOH . H 4 HOH A 2 606 7 HOH HOH . H 4 HOH A 3 607 8 HOH HOH . H 4 HOH A 4 608 9 HOH HOH . H 4 HOH A 5 609 12 HOH HOH . H 4 HOH A 6 610 13 HOH HOH . H 4 HOH A 7 611 15 HOH HOH . H 4 HOH A 8 612 16 HOH HOH . H 4 HOH A 9 613 17 HOH HOH . H 4 HOH A 10 614 24 HOH HOH . H 4 HOH A 11 615 25 HOH HOH . H 4 HOH A 12 616 27 HOH HOH . H 4 HOH A 13 617 31 HOH HOH . H 4 HOH A 14 618 32 HOH HOH . H 4 HOH A 15 619 33 HOH HOH . H 4 HOH A 16 620 34 HOH HOH . H 4 HOH A 17 621 36 HOH HOH . H 4 HOH A 18 622 37 HOH HOH . H 4 HOH A 19 623 38 HOH HOH . H 4 HOH A 20 624 48 HOH HOH . H 4 HOH A 21 625 49 HOH HOH . H 4 HOH A 22 626 50 HOH HOH . H 4 HOH A 23 627 51 HOH HOH . H 4 HOH A 24 628 52 HOH HOH . H 4 HOH A 25 629 53 HOH HOH . H 4 HOH A 26 630 54 HOH HOH . H 4 HOH A 27 631 57 HOH HOH . H 4 HOH A 28 632 58 HOH HOH . H 4 HOH A 29 633 59 HOH HOH . H 4 HOH A 30 634 60 HOH HOH . H 4 HOH A 31 635 61 HOH HOH . H 4 HOH A 32 636 62 HOH HOH . H 4 HOH A 33 637 63 HOH HOH . H 4 HOH A 34 638 64 HOH HOH . H 4 HOH A 35 639 65 HOH HOH . H 4 HOH A 36 640 66 HOH HOH . H 4 HOH A 37 641 67 HOH HOH . H 4 HOH A 38 642 68 HOH HOH . H 4 HOH A 39 643 69 HOH HOH . H 4 HOH A 40 644 70 HOH HOH . H 4 HOH A 41 645 72 HOH HOH . H 4 HOH A 42 646 73 HOH HOH . H 4 HOH A 43 647 74 HOH HOH . H 4 HOH A 44 648 75 HOH HOH . H 4 HOH A 45 649 76 HOH HOH . H 4 HOH A 46 650 77 HOH HOH . H 4 HOH A 47 651 79 HOH HOH . H 4 HOH A 48 652 80 HOH HOH . H 4 HOH A 49 653 81 HOH HOH . H 4 HOH A 50 654 82 HOH HOH . H 4 HOH A 51 655 83 HOH HOH . H 4 HOH A 52 656 84 HOH HOH . H 4 HOH A 53 657 85 HOH HOH . H 4 HOH A 54 658 91 HOH HOH . H 4 HOH A 55 659 99 HOH HOH . H 4 HOH A 56 660 100 HOH HOH . I 4 HOH B 1 602 2 HOH HOH . I 4 HOH B 2 603 3 HOH HOH . I 4 HOH B 3 604 4 HOH HOH . I 4 HOH B 4 605 5 HOH HOH . I 4 HOH B 5 606 6 HOH HOH . I 4 HOH B 6 607 10 HOH HOH . I 4 HOH B 7 608 11 HOH HOH . I 4 HOH B 8 609 14 HOH HOH . I 4 HOH B 9 610 18 HOH HOH . I 4 HOH B 10 611 19 HOH HOH . I 4 HOH B 11 612 20 HOH HOH . I 4 HOH B 12 613 21 HOH HOH . I 4 HOH B 13 614 22 HOH HOH . I 4 HOH B 14 615 23 HOH HOH . I 4 HOH B 15 616 26 HOH HOH . I 4 HOH B 16 617 28 HOH HOH . I 4 HOH B 17 618 29 HOH HOH . I 4 HOH B 18 619 30 HOH HOH . I 4 HOH B 19 620 35 HOH HOH . I 4 HOH B 20 621 39 HOH HOH . I 4 HOH B 21 622 40 HOH HOH . I 4 HOH B 22 623 41 HOH HOH . I 4 HOH B 23 624 42 HOH HOH . I 4 HOH B 24 625 43 HOH HOH . I 4 HOH B 25 626 44 HOH HOH . I 4 HOH B 26 627 45 HOH HOH . I 4 HOH B 27 628 46 HOH HOH . I 4 HOH B 28 629 47 HOH HOH . I 4 HOH B 29 630 55 HOH HOH . I 4 HOH B 30 631 56 HOH HOH . I 4 HOH B 31 632 71 HOH HOH . I 4 HOH B 32 633 78 HOH HOH . I 4 HOH B 33 634 86 HOH HOH . I 4 HOH B 34 635 87 HOH HOH . I 4 HOH B 35 636 88 HOH HOH . I 4 HOH B 36 637 89 HOH HOH . I 4 HOH B 37 638 90 HOH HOH . I 4 HOH B 38 639 92 HOH HOH . I 4 HOH B 39 640 93 HOH HOH . I 4 HOH B 40 641 94 HOH HOH . I 4 HOH B 41 642 95 HOH HOH . I 4 HOH B 42 643 96 HOH HOH . I 4 HOH B 43 644 97 HOH HOH . I 4 HOH B 44 645 98 HOH HOH . I 4 HOH B 45 646 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFV . . . F 3 27.95 18.405 35.709 1 110.62 ? C1 DFV 501 A 1 HETATM 2 C C2 DFV . . . F 3 26.602 18.322 35.938 1 109.15 ? C2 DFV 501 A 1 HETATM 3 C C3 DFV . . . F 3 25.594 19.281 35.272 1 107.17 ? C3 DFV 501 A 1 HETATM 4 C C4 DFV . . . F 3 26.103 20.24 34.394 1 107.24 ? C4 DFV 501 A 1 HETATM 5 C C5 DFV . . . F 3 27.645 20.369 34.112 1 109.61 ? C5 DFV 501 A 1 HETATM 6 C C6 DFV . . . F 3 28.486 19.474 34.741 1 111.2 ? C6 DFV 501 A 1 HETATM 7 C C7 DFV . . . F 3 25.176 21.286 33.65 1 108.27 ? C7 DFV 501 A 1 HETATM 8 C C8 DFV . . . F 3 25.915 22.285 32.745 1 105.48 ? C8 DFV 501 A 1 HETATM 9 C C9 DFV . . . F 3 27.23 21.753 32.229 1 104.79 ? C9 DFV 501 A 1 HETATM 10 O O1 DFV . . . F 3 28.115 21.319 33.241 1 110.63 ? O1 DFV 501 A 1 HETATM 11 C C10 DFV . . . F 3 27.917 22.774 31.357 1 98.54 ? C10 DFV 501 A 1 HETATM 12 C C11 DFV . . . F 3 28.189 24.089 31.754 1 97.69 ? C11 DFV 501 A 1 HETATM 13 C C12 DFV . . . F 3 28.908 25.037 30.766 1 100.52 ? C12 DFV 501 A 1 HETATM 14 C C13 DFV . . . F 3 29.296 24.602 29.506 1 103.7 ? C13 DFV 501 A 1 HETATM 15 C C14 DFV . . . F 3 28.986 23.164 29.092 1 101.98 ? C14 DFV 501 A 1 HETATM 16 C C15 DFV . . . F 3 28.354 22.315 29.955 1 101.07 ? C15 DFV 501 A 1 HETATM 17 O O2 DFV . . . F 3 23.973 21.312 33.767 1 110.79 ? O2 DFV 501 A 1 HETATM 18 O O3 DFV . . . F 3 28.783 17.554 36.312 1 111.78 ? O3 DFV 501 A 1 HETATM 19 O O4 DFV . . . F 3 29.924 25.416 28.649 1 102.24 ? O4 DFV 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #