data_1JXI # _model_server_result.job_id B1OGL7hPix-7qPwfy9ovNQ _model_server_result.datetime_utc '2024-11-15 22:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 1JXI # _exptl.entry_id 1JXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.155 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JXI _cell.length_a 77.75 _cell.length_b 77.75 _cell.length_c 183.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C6 H9 N3 O' _chem_comp.formula_weight 139.155 _chem_comp.id HMH _chem_comp.mon_nstd_flag . _chem_comp.name 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A HMH sing 150 n n CM2 HCM1 HMH sing 151 n n CM2 HCM2 HMH sing 152 n n CM2 HCM3 HMH sing 153 n n N1A C2A HMH doub 154 n y N1A C6A HMH sing 155 n y C2A N3A HMH sing 156 n y N3A C4A HMH doub 157 n y C4A N4A HMH sing 158 n n C4A C5A HMH sing 159 n y N4A HN41 HMH sing 160 n n N4A HN42 HMH sing 161 n n C5A C6A HMH doub 162 n y C5A C7A HMH sing 163 n n C6A HC6 HMH sing 164 n n C7A O1 HMH sing 165 n n C7A HC71 HMH sing 166 n n C7A HC72 HMH sing 167 n n O1 HO1 HMH sing 168 n n # _atom_sites.entry_id 1JXI _atom_sites.fract_transf_matrix[1][1] 0.012862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2003 2003 SO4 SO4 . D 2 SO4 A 1 2005 2005 SO4 SO4 . E 3 HMH A 1 2001 2001 HMH TPS . F 2 SO4 B 1 2004 2004 SO4 SO4 . G 2 SO4 B 1 2006 2006 SO4 SO4 . H 3 HMH B 1 2002 2002 HMH TPS . I 4 HOH A 1 2006 2 HOH TIP . I 4 HOH A 2 2007 4 HOH TIP . I 4 HOH A 3 2008 7 HOH TIP . I 4 HOH A 4 2009 11 HOH TIP . I 4 HOH A 5 2010 14 HOH TIP . I 4 HOH A 6 2011 16 HOH TIP . I 4 HOH A 7 2012 17 HOH TIP . I 4 HOH A 8 2013 26 HOH TIP . I 4 HOH A 9 2014 28 HOH TIP . I 4 HOH A 10 2015 30 HOH TIP . I 4 HOH A 11 2016 32 HOH TIP . I 4 HOH A 12 2017 33 HOH TIP . I 4 HOH A 13 2018 34 HOH TIP . I 4 HOH A 14 2019 35 HOH TIP . I 4 HOH A 15 2020 36 HOH TIP . I 4 HOH A 16 2021 38 HOH TIP . I 4 HOH A 17 2022 39 HOH TIP . I 4 HOH A 18 2023 40 HOH TIP . I 4 HOH A 19 2024 41 HOH TIP . I 4 HOH A 20 2025 43 HOH TIP . I 4 HOH A 21 2026 44 HOH TIP . I 4 HOH A 22 2027 45 HOH TIP . I 4 HOH A 23 2028 47 HOH TIP . I 4 HOH A 24 2029 48 HOH TIP . I 4 HOH A 25 2030 49 HOH TIP . I 4 HOH A 26 2031 50 HOH TIP . I 4 HOH A 27 2032 51 HOH TIP . I 4 HOH A 28 2033 53 HOH TIP . I 4 HOH A 29 2034 56 HOH TIP . I 4 HOH A 30 2035 59 HOH TIP . I 4 HOH A 31 2036 60 HOH TIP . I 4 HOH A 32 2037 61 HOH TIP . I 4 HOH A 33 2038 62 HOH TIP . I 4 HOH A 34 2039 63 HOH TIP . I 4 HOH A 35 2040 64 HOH TIP . I 4 HOH A 36 2041 65 HOH TIP . I 4 HOH A 37 2042 72 HOH TIP . I 4 HOH A 38 2043 73 HOH TIP . I 4 HOH A 39 2044 75 HOH TIP . J 4 HOH B 1 2007 1 HOH TIP . J 4 HOH B 2 2008 3 HOH TIP . J 4 HOH B 3 2009 5 HOH TIP . J 4 HOH B 4 2010 6 HOH TIP . J 4 HOH B 5 2011 9 HOH TIP . J 4 HOH B 6 2012 10 HOH TIP . J 4 HOH B 7 2013 12 HOH TIP . J 4 HOH B 8 2014 13 HOH TIP . J 4 HOH B 9 2015 15 HOH TIP . J 4 HOH B 10 2016 18 HOH TIP . J 4 HOH B 11 2017 19 HOH TIP . J 4 HOH B 12 2018 20 HOH TIP . J 4 HOH B 13 2019 21 HOH TIP . J 4 HOH B 14 2020 22 HOH TIP . J 4 HOH B 15 2021 23 HOH TIP . J 4 HOH B 16 2022 24 HOH TIP . J 4 HOH B 17 2023 25 HOH TIP . J 4 HOH B 18 2024 27 HOH TIP . J 4 HOH B 19 2025 29 HOH TIP . J 4 HOH B 20 2026 31 HOH TIP . J 4 HOH B 21 2027 37 HOH TIP . J 4 HOH B 22 2028 42 HOH TIP . J 4 HOH B 23 2029 46 HOH TIP . J 4 HOH B 24 2030 52 HOH TIP . J 4 HOH B 25 2031 54 HOH TIP . J 4 HOH B 26 2032 55 HOH TIP . J 4 HOH B 27 2033 57 HOH TIP . J 4 HOH B 28 2034 58 HOH TIP . J 4 HOH B 29 2035 66 HOH TIP . J 4 HOH B 30 2036 67 HOH TIP . J 4 HOH B 31 2037 68 HOH TIP . J 4 HOH B 32 2038 69 HOH TIP . J 4 HOH B 33 2039 70 HOH TIP . J 4 HOH B 34 2040 71 HOH TIP . J 4 HOH B 35 2041 74 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 HMH . . . E 3 25.423 47.844 69.419 1 44.99 ? CM2 HMH 2001 A 1 HETATM 2 N N1A HMH . . . E 3 26.227 49.734 70.753 1 47.16 ? N1A HMH 2001 A 1 HETATM 3 C C2A HMH . . . E 3 25.921 49.224 69.467 1 46.22 ? C2A HMH 2001 A 1 HETATM 4 N N3A HMH . . . E 3 26.074 49.948 68.364 1 46.17 ? N3A HMH 2001 A 1 HETATM 5 C C4A HMH . . . E 3 26.566 51.303 68.419 1 48.44 ? C4A HMH 2001 A 1 HETATM 6 N N4A HMH . . . E 3 26.696 51.979 67.265 1 47.83 ? N4A HMH 2001 A 1 HETATM 7 C C5A HMH . . . E 3 26.918 51.923 69.765 1 49.97 ? C5A HMH 2001 A 1 HETATM 8 C C6A HMH . . . E 3 26.714 51.059 70.88 1 48.95 ? C6A HMH 2001 A 1 HETATM 9 C C7A HMH . . . E 3 27.426 53.336 69.778 1 50.45 ? C7A HMH 2001 A 1 HETATM 10 O O1 HMH . . . E 3 26.478 54.506 69.15 1 56.57 ? O1 HMH 2001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 10 #