data_1JXM # _model_server_result.job_id xj0aT4kA57F9kGcgNHkFJQ _model_server_result.datetime_utc '2025-02-27 08:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 1JXM # _exptl.entry_id 1JXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JXM _cell.length_a 59.724 _cell.length_b 59.724 _cell.length_c 209.956 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1JXM _atom_sites.fract_transf_matrix[1][1] 0.016744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 101 101 5GP 5GP . C 3 GAI A 1 201 201 GAI GAI . D 3 GAI A 1 202 202 GAI GAI . E 4 MPD A 1 102 102 MPD MPD . F 4 MPD A 1 103 103 MPD MPD . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 3 3 HOH HOH . G 5 HOH A 4 4 4 HOH HOH . G 5 HOH A 5 5 5 HOH HOH . G 5 HOH A 6 6 6 HOH HOH . G 5 HOH A 7 7 7 HOH HOH . G 5 HOH A 8 8 8 HOH HOH . G 5 HOH A 9 9 9 HOH HOH . G 5 HOH A 10 10 10 HOH HOH . G 5 HOH A 11 11 11 HOH HOH . G 5 HOH A 12 12 12 HOH HOH . G 5 HOH A 13 13 13 HOH HOH . G 5 HOH A 14 14 14 HOH HOH . G 5 HOH A 15 15 15 HOH HOH . G 5 HOH A 16 16 16 HOH HOH . G 5 HOH A 17 17 17 HOH HOH . G 5 HOH A 18 18 18 HOH HOH . G 5 HOH A 19 19 19 HOH HOH . G 5 HOH A 20 20 20 HOH HOH . G 5 HOH A 21 21 21 HOH HOH . G 5 HOH A 22 22 22 HOH HOH . G 5 HOH A 23 23 23 HOH HOH . G 5 HOH A 24 24 24 HOH HOH . G 5 HOH A 25 25 25 HOH HOH . G 5 HOH A 26 26 26 HOH HOH . G 5 HOH A 27 27 27 HOH HOH . G 5 HOH A 28 28 28 HOH HOH . G 5 HOH A 29 29 29 HOH HOH . G 5 HOH A 30 30 30 HOH HOH . G 5 HOH A 31 31 31 HOH HOH . G 5 HOH A 32 32 32 HOH HOH . G 5 HOH A 33 33 33 HOH HOH . G 5 HOH A 34 34 34 HOH HOH . G 5 HOH A 35 35 35 HOH HOH . G 5 HOH A 36 36 36 HOH HOH . G 5 HOH A 37 37 37 HOH HOH . G 5 HOH A 38 38 38 HOH HOH . G 5 HOH A 39 39 39 HOH HOH . G 5 HOH A 40 40 40 HOH HOH . G 5 HOH A 41 41 41 HOH HOH . G 5 HOH A 42 42 42 HOH HOH . G 5 HOH A 43 43 43 HOH HOH . G 5 HOH A 44 44 44 HOH HOH . G 5 HOH A 45 45 45 HOH HOH . G 5 HOH A 46 46 46 HOH HOH . G 5 HOH A 47 47 47 HOH HOH . G 5 HOH A 48 48 48 HOH HOH . G 5 HOH A 49 49 49 HOH HOH . G 5 HOH A 50 50 50 HOH HOH . G 5 HOH A 51 51 51 HOH HOH . G 5 HOH A 52 52 52 HOH HOH . G 5 HOH A 53 53 53 HOH HOH . G 5 HOH A 54 54 54 HOH HOH . G 5 HOH A 55 55 55 HOH HOH . G 5 HOH A 56 56 56 HOH HOH . G 5 HOH A 57 57 57 HOH HOH . G 5 HOH A 58 58 58 HOH HOH . G 5 HOH A 59 59 59 HOH HOH . G 5 HOH A 60 60 60 HOH HOH . G 5 HOH A 61 61 61 HOH HOH . G 5 HOH A 62 62 62 HOH HOH . G 5 HOH A 63 63 63 HOH HOH . G 5 HOH A 64 64 64 HOH HOH . G 5 HOH A 65 65 65 HOH HOH . G 5 HOH A 66 66 66 HOH HOH . G 5 HOH A 67 67 67 HOH HOH . G 5 HOH A 68 68 68 HOH HOH . G 5 HOH A 69 69 69 HOH HOH . G 5 HOH A 70 70 70 HOH HOH . G 5 HOH A 71 71 71 HOH HOH . G 5 HOH A 72 72 72 HOH HOH . G 5 HOH A 73 73 73 HOH HOH . G 5 HOH A 74 74 74 HOH HOH . G 5 HOH A 75 75 75 HOH HOH . G 5 HOH A 76 76 76 HOH HOH . G 5 HOH A 77 77 77 HOH HOH . G 5 HOH A 78 78 78 HOH HOH . G 5 HOH A 79 79 79 HOH HOH . G 5 HOH A 80 80 80 HOH HOH . G 5 HOH A 81 81 81 HOH HOH . G 5 HOH A 82 82 82 HOH HOH . G 5 HOH A 83 83 83 HOH HOH . G 5 HOH A 84 84 84 HOH HOH . G 5 HOH A 85 85 85 HOH HOH . G 5 HOH A 86 86 86 HOH HOH . G 5 HOH A 87 87 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 43.956 36.128 59.798 1 65.87 ? P 5GP 101 A 1 HETATM 2 O O1P 5GP . . . B 2 43.834 37.59 59.942 1 65 ? O1P 5GP 101 A 1 HETATM 3 O O2P 5GP . . . B 2 45.379 35.633 59.939 1 64.62 ? O2P 5GP 101 A 1 HETATM 4 O O3P 5GP . . . B 2 43.014 35.378 60.805 1 65.32 ? O3P 5GP 101 A 1 HETATM 5 O O5' 5GP . . . B 2 43.438 35.615 58.365 1 65.54 ? O5' 5GP 101 A 1 HETATM 6 C C5' 5GP . . . B 2 42.189 36.092 57.846 1 67 ? C5' 5GP 101 A 1 HETATM 7 C C4' 5GP . . . B 2 41.826 35.502 56.5 1 67.36 ? C4' 5GP 101 A 1 HETATM 8 O O4' 5GP . . . B 2 42.807 36.039 55.535 1 66.62 ? O4' 5GP 101 A 1 HETATM 9 C C3' 5GP . . . B 2 41.918 33.998 56.318 1 67.72 ? C3' 5GP 101 A 1 HETATM 10 O O3' 5GP . . . B 2 40.746 33.315 56.72 1 69.13 ? O3' 5GP 101 A 1 HETATM 11 C C2' 5GP . . . B 2 42.175 33.817 54.836 1 68.32 ? C2' 5GP 101 A 1 HETATM 12 O O2' 5GP . . . B 2 40.95 33.737 54.069 1 69.69 ? O2' 5GP 101 A 1 HETATM 13 C C1' 5GP . . . B 2 43.014 35.041 54.498 1 67.42 ? C1' 5GP 101 A 1 HETATM 14 N N9 5GP . . . B 2 44.482 34.822 54.337 1 66.36 ? N9 5GP 101 A 1 HETATM 15 C C8 5GP . . . B 2 45.526 34.98 55.22 1 66.08 ? C8 5GP 101 A 1 HETATM 16 N N7 5GP . . . B 2 46.715 34.697 54.739 1 65.94 ? N7 5GP 101 A 1 HETATM 17 C C5 5GP . . . B 2 46.416 34.314 53.408 1 65.6 ? C5 5GP 101 A 1 HETATM 18 C C6 5GP . . . B 2 47.319 33.894 52.369 1 65.54 ? C6 5GP 101 A 1 HETATM 19 O O6 5GP . . . B 2 48.541 33.781 52.427 1 64.5 ? O6 5GP 101 A 1 HETATM 20 N N1 5GP . . . B 2 46.619 33.592 51.153 1 65.46 ? N1 5GP 101 A 1 HETATM 21 C C2 5GP . . . B 2 45.232 33.696 51.001 1 65.51 ? C2 5GP 101 A 1 HETATM 22 N N2 5GP . . . B 2 44.782 33.362 49.77 1 65.6 ? N2 5GP 101 A 1 HETATM 23 N N3 5GP . . . B 2 44.384 34.093 51.976 1 66.32 ? N3 5GP 101 A 1 HETATM 24 C C4 5GP . . . B 2 45.055 34.387 53.156 1 66.34 ? C4 5GP 101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #