data_1JYL # _model_server_result.job_id xQITQrWgWTw-_kAUqsPKeg _model_server_result.datetime_utc '2024-10-19 00:46:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1996}' # _entry.id 1JYL # _exptl.entry_id 1JYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.4 _cell.angle_beta 92.8 _cell.angle_gamma 97.1 _cell.entry_id 1JYL _cell.length_a 48.2 _cell.length_b 69 _cell.length_c 81.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JYL _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 127 A ASP 107 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc2 A OD2 ASP 127 A ASP 107 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A OE2 GLU 236 A GLU 216 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 A OD1 ASP 238 A ASP 218 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 F O2B CDC . A CDC 1991 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 F O2A CDC . A CDC 1991 1_555 E MG MG . A MG 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc7 B OD1 ASP 127 B ASP 107 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 B OD2 ASP 127 B ASP 107 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc9 B OE2 GLU 236 B GLU 216 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc10 B OD1 ASP 238 B ASP 218 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc11 H O2A CDC . B CDC 2991 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc12 H O2B CDC . B CDC 2991 1_555 G MG MG . B MG 2996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc13 G MG MG . B MG 2996 1_555 N O HOH . B HOH 5164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc14 C OD2 ASP 127 C ASP 107 1_555 I MG MG . C MG 3996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc15 C OE2 GLU 236 C GLU 216 1_555 I MG MG . C MG 3996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc16 C OD1 ASP 238 C ASP 218 1_555 I MG MG . C MG 3996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc17 J O2A CDC . C CDC 3991 1_555 I MG MG . C MG 3996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc18 J O2B CDC . C CDC 3991 1_555 I MG MG . C MG 3996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc19 D OD2 ASP 127 D ASP 107 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc20 D OD1 ASP 127 D ASP 107 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc21 D OE1 GLU 236 D GLU 216 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc22 D OD2 ASP 238 D ASP 218 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc23 L O2B CDC . D CDC 4991 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc24 L O2A CDC . D CDC 4991 1_555 K MG MG . D MG 4996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc25 K MG MG . D MG 4996 1_555 P O HOH . D HOH 5165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JYL _atom_sites.fract_transf_matrix[1][1] 0.020747 _atom_sites.fract_transf_matrix[1][2] 0.002584 _atom_sites.fract_transf_matrix[1][3] 0.001188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014605 _atom_sites.fract_transf_matrix[2][3] 0.000965 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1996 1996 MG MG . F 3 CDC A 1 1991 1991 CDC CDC . G 2 MG B 1 2996 2996 MG MG . H 3 CDC B 1 2991 2991 CDC CDC . I 2 MG C 1 3996 3996 MG MG . J 3 CDC C 1 3991 3991 CDC CDC . K 2 MG D 1 4996 4996 MG MG . L 3 CDC D 1 4991 4991 CDC CDC . M 4 HOH A 1 5004 5004 HOH HOH . M 4 HOH A 2 5005 5005 HOH HOH . M 4 HOH A 3 5009 5009 HOH HOH . M 4 HOH A 4 5012 5012 HOH HOH . M 4 HOH A 5 5021 5021 HOH HOH . M 4 HOH A 6 5026 5026 HOH HOH . M 4 HOH A 7 5027 5027 HOH HOH . M 4 HOH A 8 5029 5029 HOH HOH . M 4 HOH A 9 5031 5031 HOH HOH . M 4 HOH A 10 5037 5037 HOH HOH . M 4 HOH A 11 5042 5042 HOH HOH . M 4 HOH A 12 5048 5048 HOH HOH . M 4 HOH A 13 5052 5052 HOH HOH . M 4 HOH A 14 5054 5054 HOH HOH . M 4 HOH A 15 5055 5055 HOH HOH . M 4 HOH A 16 5059 5059 HOH HOH . M 4 HOH A 17 5071 5071 HOH HOH . M 4 HOH A 18 5072 5072 HOH HOH . M 4 HOH A 19 5073 5073 HOH HOH . M 4 HOH A 20 5077 5077 HOH HOH . M 4 HOH A 21 5078 5078 HOH HOH . M 4 HOH A 22 5079 5079 HOH HOH . M 4 HOH A 23 5080 5080 HOH HOH . M 4 HOH A 24 5081 5081 HOH HOH . M 4 HOH A 25 5082 5082 HOH HOH . M 4 HOH A 26 5083 5083 HOH HOH . M 4 HOH A 27 5084 5084 HOH HOH . M 4 HOH A 28 5085 5085 HOH HOH . M 4 HOH A 29 5086 5086 HOH HOH . M 4 HOH A 30 5087 5087 HOH HOH . M 4 HOH A 31 5088 5088 HOH HOH . M 4 HOH A 32 5089 5089 HOH HOH . M 4 HOH A 33 5090 5090 HOH HOH . M 4 HOH A 34 5091 5091 HOH HOH . M 4 HOH A 35 5092 5092 HOH HOH . M 4 HOH A 36 5093 5093 HOH HOH . M 4 HOH A 37 5094 5094 HOH HOH . M 4 HOH A 38 5095 5095 HOH HOH . M 4 HOH A 39 5096 5096 HOH HOH . M 4 HOH A 40 5097 5097 HOH HOH . M 4 HOH A 41 5154 5154 HOH HOH . M 4 HOH A 42 5155 5155 HOH HOH . M 4 HOH A 43 5156 5156 HOH HOH . M 4 HOH A 44 5157 5157 HOH HOH . M 4 HOH A 45 5158 5158 HOH HOH . M 4 HOH A 46 5159 5159 HOH HOH . M 4 HOH A 47 5160 5160 HOH HOH . M 4 HOH A 48 5168 5168 HOH HOH . M 4 HOH A 49 5169 5169 HOH HOH . M 4 HOH A 50 5177 5177 HOH HOH . M 4 HOH A 51 5178 5178 HOH HOH . N 4 HOH B 1 5001 5001 HOH HOH . N 4 HOH B 2 5006 5006 HOH HOH . N 4 HOH B 3 5008 5008 HOH HOH . N 4 HOH B 4 5015 5015 HOH HOH . N 4 HOH B 5 5022 5022 HOH HOH . N 4 HOH B 6 5023 5023 HOH HOH . N 4 HOH B 7 5028 5028 HOH HOH . N 4 HOH B 8 5032 5032 HOH HOH . N 4 HOH B 9 5033 5033 HOH HOH . N 4 HOH B 10 5035 5035 HOH HOH . N 4 HOH B 11 5036 5036 HOH HOH . N 4 HOH B 12 5038 5038 HOH HOH . N 4 HOH B 13 5040 5040 HOH HOH . N 4 HOH B 14 5041 5041 HOH HOH . N 4 HOH B 15 5043 5043 HOH HOH . N 4 HOH B 16 5046 5046 HOH HOH . N 4 HOH B 17 5050 5050 HOH HOH . N 4 HOH B 18 5062 5062 HOH HOH . N 4 HOH B 19 5075 5075 HOH HOH . N 4 HOH B 20 5098 5098 HOH HOH . N 4 HOH B 21 5099 5099 HOH HOH . N 4 HOH B 22 5100 5100 HOH HOH . N 4 HOH B 23 5101 5101 HOH HOH . N 4 HOH B 24 5103 5103 HOH HOH . N 4 HOH B 25 5104 5104 HOH HOH . N 4 HOH B 26 5105 5105 HOH HOH . N 4 HOH B 27 5106 5106 HOH HOH . N 4 HOH B 28 5107 5107 HOH HOH . N 4 HOH B 29 5108 5108 HOH HOH . N 4 HOH B 30 5153 5153 HOH HOH . N 4 HOH B 31 5164 5164 HOH HOH . N 4 HOH B 32 5173 5173 HOH HOH . N 4 HOH B 33 5174 5174 HOH HOH . O 4 HOH C 1 5002 5002 HOH HOH . O 4 HOH C 2 5010 5010 HOH HOH . O 4 HOH C 3 5013 5013 HOH HOH . O 4 HOH C 4 5018 5018 HOH HOH . O 4 HOH C 5 5024 5024 HOH HOH . O 4 HOH C 6 5025 5025 HOH HOH . O 4 HOH C 7 5030 5030 HOH HOH . O 4 HOH C 8 5034 5034 HOH HOH . O 4 HOH C 9 5039 5039 HOH HOH . O 4 HOH C 10 5044 5044 HOH HOH . O 4 HOH C 11 5045 5045 HOH HOH . O 4 HOH C 12 5047 5047 HOH HOH . O 4 HOH C 13 5053 5053 HOH HOH . O 4 HOH C 14 5060 5060 HOH HOH . O 4 HOH C 15 5064 5064 HOH HOH . O 4 HOH C 16 5065 5065 HOH HOH . O 4 HOH C 17 5066 5066 HOH HOH . O 4 HOH C 18 5067 5067 HOH HOH . O 4 HOH C 19 5070 5070 HOH HOH . O 4 HOH C 20 5102 5102 HOH HOH . O 4 HOH C 21 5109 5109 HOH HOH . O 4 HOH C 22 5110 5110 HOH HOH . O 4 HOH C 23 5112 5112 HOH HOH . O 4 HOH C 24 5114 5114 HOH HOH . O 4 HOH C 25 5115 5115 HOH HOH . O 4 HOH C 26 5116 5116 HOH HOH . O 4 HOH C 27 5117 5117 HOH HOH . O 4 HOH C 28 5118 5118 HOH HOH . O 4 HOH C 29 5119 5119 HOH HOH . O 4 HOH C 30 5120 5120 HOH HOH . O 4 HOH C 31 5121 5121 HOH HOH . O 4 HOH C 32 5122 5122 HOH HOH . O 4 HOH C 33 5123 5123 HOH HOH . O 4 HOH C 34 5124 5124 HOH HOH . O 4 HOH C 35 5125 5125 HOH HOH . O 4 HOH C 36 5126 5126 HOH HOH . O 4 HOH C 37 5127 5127 HOH HOH . O 4 HOH C 38 5128 5128 HOH HOH . O 4 HOH C 39 5129 5129 HOH HOH . O 4 HOH C 40 5130 5130 HOH HOH . O 4 HOH C 41 5131 5131 HOH HOH . O 4 HOH C 42 5132 5132 HOH HOH . O 4 HOH C 43 5133 5133 HOH HOH . O 4 HOH C 44 5134 5134 HOH HOH . O 4 HOH C 45 5135 5135 HOH HOH . O 4 HOH C 46 5136 5136 HOH HOH . O 4 HOH C 47 5137 5137 HOH HOH . O 4 HOH C 48 5167 5167 HOH HOH . O 4 HOH C 49 5171 5171 HOH HOH . O 4 HOH C 50 5172 5172 HOH HOH . P 4 HOH D 1 5003 5003 HOH HOH . P 4 HOH D 2 5007 5007 HOH HOH . P 4 HOH D 3 5011 5011 HOH HOH . P 4 HOH D 4 5014 5014 HOH HOH . P 4 HOH D 5 5016 5016 HOH HOH . P 4 HOH D 6 5017 5017 HOH HOH . P 4 HOH D 7 5019 5019 HOH HOH . P 4 HOH D 8 5020 5020 HOH HOH . P 4 HOH D 9 5049 5049 HOH HOH . P 4 HOH D 10 5051 5051 HOH HOH . P 4 HOH D 11 5056 5056 HOH HOH . P 4 HOH D 12 5057 5057 HOH HOH . P 4 HOH D 13 5058 5058 HOH HOH . P 4 HOH D 14 5061 5061 HOH HOH . P 4 HOH D 15 5063 5063 HOH HOH . P 4 HOH D 16 5068 5068 HOH HOH . P 4 HOH D 17 5069 5069 HOH HOH . P 4 HOH D 18 5074 5074 HOH HOH . P 4 HOH D 19 5076 5076 HOH HOH . P 4 HOH D 20 5111 5111 HOH HOH . P 4 HOH D 21 5113 5113 HOH HOH . P 4 HOH D 22 5138 5138 HOH HOH . P 4 HOH D 23 5139 5139 HOH HOH . P 4 HOH D 24 5140 5140 HOH HOH . P 4 HOH D 25 5141 5141 HOH HOH . P 4 HOH D 26 5142 5142 HOH HOH . P 4 HOH D 27 5143 5143 HOH HOH . P 4 HOH D 28 5144 5144 HOH HOH . P 4 HOH D 29 5145 5145 HOH HOH . P 4 HOH D 30 5146 5146 HOH HOH . P 4 HOH D 31 5147 5147 HOH HOH . P 4 HOH D 32 5148 5148 HOH HOH . P 4 HOH D 33 5149 5149 HOH HOH . P 4 HOH D 34 5150 5150 HOH HOH . P 4 HOH D 35 5151 5151 HOH HOH . P 4 HOH D 36 5152 5152 HOH HOH . P 4 HOH D 37 5161 5161 HOH HOH . P 4 HOH D 38 5162 5162 HOH HOH . P 4 HOH D 39 5163 5163 HOH HOH . P 4 HOH D 40 5165 5165 HOH HOH . P 4 HOH D 41 5166 5166 HOH HOH . P 4 HOH D 42 5170 5170 HOH HOH . P 4 HOH D 43 5175 5175 HOH HOH . P 4 HOH D 44 5176 5176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.774 _atom_site.Cartn_y 32.057 _atom_site.Cartn_z 8.234 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1996 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #