data_1JZE # _model_server_result.job_id 887slANl0-DBIIunRpfMiA _model_server_result.datetime_utc '2024-12-03 23:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 1JZE # _exptl.entry_id 1JZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.507 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "DELTA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JZE _cell.length_a 53.43 _cell.length_b 61.76 _cell.length_c 68.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O ALA 1 A ALA 1 1_555 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A N ALA 1 A ALA 1 1_555 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc3 A N ALA 1 A ALA 1 4_565 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc4 A O ALA 1 A ALA 1 4_565 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A O GLY 45 A GLY 45 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc6 A ND1 HIS 46 A HIS 46 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc7 A NE2 HIS 83 A HIS 83 1_555 D RU DRU . A DRU 903 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A NE2 HIS 83 A HIS 83 1_555 E RU LRU . A LRU 904 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.079 ? metalc ? metalc9 A SG CYS 112 A CYS 112 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 A ND1 HIS 117 A HIS 117 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc11 A SD MET 121 A MET 121 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? # _chem_comp.formula 'C23 H19 N6 Ru 2' _chem_comp.formula_weight 480.507 _chem_comp.id DRU _chem_comp.mon_nstd_flag . _chem_comp.name "DELTA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 DRU doub 83 n y C10 C11 DRU sing 84 n y C9 C8 DRU sing 85 n y C11 C12 DRU doub 86 n y C8 C7 DRU sing 87 n n C8 N13 DRU doub 88 n y C6 C7 DRU doub 89 n y C6 C5 DRU sing 90 n y C12 N13 DRU sing 91 n y C7 N2 DRU sing 92 n y C5 C4 DRU doub 93 n y N13 RU DRU sing 94 n n N2 C3 DRU doub 95 n y N2 RU DRU sing 96 n n C4 C3 DRU sing 97 n y RU N37 DRU sing 98 n n RU N26 DRU sing 99 n n RU ND1 DRU sing 100 n n C36 N37 DRU doub 101 n y C36 C35 DRU sing 102 n y N37 C32 DRU sing 103 n y C35 C34 DRU doub 104 n y N26 C27 DRU doub 105 n y N26 C31 DRU sing 106 n y C27 C28 DRU sing 107 n y ND1 CE1 DRU sing 108 n y ND1 CG DRU sing 109 n y C32 C31 DRU sing 110 n n C32 C33 DRU doub 111 n y C34 C33 DRU sing 112 n y C31 C30 DRU doub 113 n y CE1 NE2 DRU doub 114 n y C28 C29 DRU doub 115 n y C30 C29 DRU sing 116 n y CG CD2 DRU doub 117 n y NE2 CD2 DRU sing 118 n y C3 H1 DRU sing 119 n n C4 H2 DRU sing 120 n n C5 H3 DRU sing 121 n n C6 H4 DRU sing 122 n n C9 H5 DRU sing 123 n n C10 H6 DRU sing 124 n n C11 H7 DRU sing 125 n n C12 H8 DRU sing 126 n n C27 H9 DRU sing 127 n n C28 H10 DRU sing 128 n n C29 H11 DRU sing 129 n n C30 H12 DRU sing 130 n n C33 H13 DRU sing 131 n n C34 H14 DRU sing 132 n n C35 H15 DRU sing 133 n n C36 H16 DRU sing 134 n n CG H17 DRU sing 135 n n CD2 H18 DRU sing 136 n n CE1 H19 DRU sing 137 n n # _atom_sites.entry_id 1JZE _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 901 901 CU CU . C 2 CU A 1 902 902 CU CU . D 3 DRU A 1 903 903 DRU RUA . E 4 LRU A 1 904 904 LRU RUB . F 5 HOH A 1 331 331 HOH WAT . F 5 HOH A 2 332 332 HOH WAT . F 5 HOH A 3 333 333 HOH WAT . F 5 HOH A 4 334 334 HOH WAT . F 5 HOH A 5 335 335 HOH WAT . F 5 HOH A 6 336 336 HOH WAT . F 5 HOH A 7 337 337 HOH WAT . F 5 HOH A 8 338 338 HOH WAT . F 5 HOH A 9 339 339 HOH WAT . F 5 HOH A 10 341 341 HOH WAT . F 5 HOH A 11 342 342 HOH WAT . F 5 HOH A 12 343 343 HOH WAT . F 5 HOH A 13 344 344 HOH WAT . F 5 HOH A 14 345 345 HOH WAT . F 5 HOH A 15 346 346 HOH WAT . F 5 HOH A 16 347 347 HOH WAT . F 5 HOH A 17 348 348 HOH WAT . F 5 HOH A 18 349 349 HOH WAT . F 5 HOH A 19 351 351 HOH WAT . F 5 HOH A 20 352 352 HOH WAT . F 5 HOH A 21 353 353 HOH WAT . F 5 HOH A 22 354 354 HOH WAT . F 5 HOH A 23 355 355 HOH WAT . F 5 HOH A 24 356 356 HOH WAT . F 5 HOH A 25 357 357 HOH WAT . F 5 HOH A 26 358 358 HOH WAT . F 5 HOH A 27 359 359 HOH WAT . F 5 HOH A 28 360 360 HOH WAT . F 5 HOH A 29 361 361 HOH WAT . F 5 HOH A 30 362 362 HOH WAT . F 5 HOH A 31 363 363 HOH WAT . F 5 HOH A 32 364 364 HOH WAT . F 5 HOH A 33 365 365 HOH WAT . F 5 HOH A 34 366 366 HOH WAT . F 5 HOH A 35 367 367 HOH WAT . F 5 HOH A 36 368 368 HOH WAT . F 5 HOH A 37 369 369 HOH WAT . F 5 HOH A 38 370 370 HOH WAT . F 5 HOH A 39 371 371 HOH WAT . F 5 HOH A 40 372 372 HOH WAT . F 5 HOH A 41 373 373 HOH WAT . F 5 HOH A 42 374 374 HOH WAT . F 5 HOH A 43 375 375 HOH WAT . F 5 HOH A 44 376 376 HOH WAT . F 5 HOH A 45 377 377 HOH WAT . F 5 HOH A 46 378 378 HOH WAT . F 5 HOH A 47 379 379 HOH WAT . F 5 HOH A 48 380 380 HOH WAT . F 5 HOH A 49 381 381 HOH WAT . F 5 HOH A 50 382 382 HOH WAT . F 5 HOH A 51 383 383 HOH WAT . F 5 HOH A 52 384 384 HOH WAT . F 5 HOH A 53 385 385 HOH WAT . F 5 HOH A 54 386 386 HOH WAT . F 5 HOH A 55 387 387 HOH WAT . F 5 HOH A 56 388 388 HOH WAT . F 5 HOH A 57 389 389 HOH WAT . F 5 HOH A 58 390 390 HOH WAT . F 5 HOH A 59 391 391 HOH WAT . F 5 HOH A 60 392 392 HOH WAT . F 5 HOH A 61 394 394 HOH WAT . F 5 HOH A 62 395 395 HOH WAT . F 5 HOH A 63 396 396 HOH WAT . F 5 HOH A 64 397 397 HOH WAT . F 5 HOH A 65 398 398 HOH WAT . F 5 HOH A 66 399 399 HOH WAT . F 5 HOH A 67 400 400 HOH WAT . F 5 HOH A 68 401 401 HOH WAT . F 5 HOH A 69 402 402 HOH WAT . F 5 HOH A 70 403 403 HOH WAT . F 5 HOH A 71 404 404 HOH WAT . F 5 HOH A 72 405 405 HOH WAT . F 5 HOH A 73 406 406 HOH WAT . F 5 HOH A 74 407 407 HOH WAT . F 5 HOH A 75 408 408 HOH WAT . F 5 HOH A 76 409 409 HOH WAT . F 5 HOH A 77 410 410 HOH WAT . F 5 HOH A 78 411 411 HOH WAT . F 5 HOH A 79 412 412 HOH WAT . F 5 HOH A 80 413 413 HOH WAT . F 5 HOH A 81 414 414 HOH WAT . F 5 HOH A 82 415 415 HOH WAT . F 5 HOH A 83 416 416 HOH WAT . F 5 HOH A 84 417 417 HOH WAT . F 5 HOH A 85 418 418 HOH WAT . F 5 HOH A 86 419 419 HOH WAT . F 5 HOH A 87 420 420 HOH WAT . F 5 HOH A 88 421 421 HOH WAT . F 5 HOH A 89 422 422 HOH WAT . F 5 HOH A 90 424 424 HOH WAT . F 5 HOH A 91 425 425 HOH WAT . F 5 HOH A 92 426 426 HOH WAT . F 5 HOH A 93 427 427 HOH WAT . F 5 HOH A 94 428 428 HOH WAT . F 5 HOH A 95 429 429 HOH WAT . F 5 HOH A 96 430 430 HOH WAT . F 5 HOH A 97 431 431 HOH WAT . F 5 HOH A 98 432 432 HOH WAT . F 5 HOH A 99 433 433 HOH WAT . F 5 HOH A 100 434 434 HOH WAT . F 5 HOH A 101 435 435 HOH WAT . F 5 HOH A 102 436 436 HOH WAT . F 5 HOH A 103 437 437 HOH WAT . F 5 HOH A 104 438 438 HOH WAT . F 5 HOH A 105 439 439 HOH WAT . F 5 HOH A 106 440 440 HOH WAT . F 5 HOH A 107 441 441 HOH WAT . F 5 HOH A 108 442 442 HOH WAT . F 5 HOH A 109 443 443 HOH WAT . F 5 HOH A 110 444 444 HOH WAT . F 5 HOH A 111 445 445 HOH WAT . F 5 HOH A 112 446 446 HOH WAT . F 5 HOH A 113 447 447 HOH WAT . F 5 HOH A 114 448 448 HOH WAT . F 5 HOH A 115 449 449 HOH WAT . F 5 HOH A 116 450 450 HOH WAT . F 5 HOH A 117 451 451 HOH WAT . F 5 HOH A 118 452 452 HOH WAT . F 5 HOH A 119 453 453 HOH WAT . F 5 HOH A 120 454 454 HOH WAT . F 5 HOH A 121 455 455 HOH WAT . F 5 HOH A 122 456 456 HOH WAT . F 5 HOH A 123 457 457 HOH WAT . F 5 HOH A 124 468 468 HOH WAT . F 5 HOH A 125 469 469 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RU RU DRU . A . D 3 18.965 11.143 16.793 0.5 30.89 ? RU DRU 903 A 1 HETATM 2 N N2 DRU . A . D 3 19.236 9.209 16.097 0.5 31.06 ? N2 DRU 903 A 1 HETATM 3 C C3 DRU . A . D 3 18.718 8.074 16.656 0.5 30.83 ? C3 DRU 903 A 1 HETATM 4 C C4 DRU . A . D 3 19.02 6.809 16.167 0.5 31.3 ? C4 DRU 903 A 1 HETATM 5 C C5 DRU . A . D 3 19.873 6.726 15.085 0.5 30.91 ? C5 DRU 903 A 1 HETATM 6 C C6 DRU . A . D 3 20.394 7.856 14.52 0.5 31 ? C6 DRU 903 A 1 HETATM 7 C C7 DRU . A . D 3 20.072 9.111 15.036 0.5 30.94 ? C7 DRU 903 A 1 HETATM 8 C C8 DRU . A . D 3 20.56 10.391 14.512 0.5 31.56 ? C8 DRU 903 A 1 HETATM 9 C C9 DRU . A . D 3 21.432 10.496 13.423 0.5 31.95 ? C9 DRU 903 A 1 HETATM 10 C C10 DRU . A . D 3 21.834 11.742 13.003 0.5 31.74 ? C10 DRU 903 A 1 HETATM 11 C C11 DRU . A . D 3 21.377 12.873 13.662 0.5 32.02 ? C11 DRU 903 A 1 HETATM 12 C C12 DRU . A . D 3 20.519 12.726 14.737 0.5 31.74 ? C12 DRU 903 A 1 HETATM 13 N N13 DRU . A . D 3 20.125 11.503 15.156 0.5 31.37 ? N13 DRU 903 A 1 HETATM 14 N N26 DRU . A . D 3 20.607 11.075 18.06 0.5 32.32 ? N26 DRU 903 A 1 HETATM 15 C C27 DRU . A . D 3 21.391 9.984 18.24 0.5 32.99 ? C27 DRU 903 A 1 HETATM 16 C C28 DRU . A . D 3 22.521 10.023 19.021 0.5 33.67 ? C28 DRU 903 A 1 HETATM 17 C C29 DRU . A . D 3 22.868 11.234 19.639 0.5 33.78 ? C29 DRU 903 A 1 HETATM 18 C C30 DRU . A . D 3 22.084 12.348 19.479 0.5 33.5 ? C30 DRU 903 A 1 HETATM 19 C C31 DRU . A . D 3 20.924 12.253 18.671 0.5 32.99 ? C31 DRU 903 A 1 HETATM 20 C C32 DRU . A . D 3 19.987 13.352 18.411 0.5 32.76 ? C32 DRU 903 A 1 HETATM 21 C C33 DRU . A . D 3 20.153 14.642 18.94 0.5 33.19 ? C33 DRU 903 A 1 HETATM 22 C C34 DRU . A . D 3 19.228 15.615 18.655 0.5 33.33 ? C34 DRU 903 A 1 HETATM 23 C C35 DRU . A . D 3 18.155 15.319 17.832 0.5 33.7 ? C35 DRU 903 A 1 HETATM 24 C C36 DRU . A . D 3 18.03 14.031 17.312 0.5 32.88 ? C36 DRU 903 A 1 HETATM 25 N N37 DRU . A . D 3 18.947 13.062 17.586 0.5 32.45 ? N37 DRU 903 A 1 HETATM 26 C CG DRU . A . D 3 17.921 11.137 19.605 0.5 26.81 ? CG DRU 903 A 1 HETATM 27 C CD2 DRU . A . D 3 17.122 10.639 20.578 0.5 28.03 ? CD2 DRU 903 A 1 HETATM 28 N ND1 DRU . A . D 3 17.901 10.449 18.41 0.5 28.25 ? ND1 DRU 903 A 1 HETATM 29 C CE1 DRU . A . D 3 17.03 9.525 18.78 0.5 28.27 ? CE1 DRU 903 A 1 HETATM 30 N NE2 DRU . A . D 3 16.523 9.546 20 0.5 27.9 ? NE2 DRU 903 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #