data_1JZE # _model_server_result.job_id lnU_DkNPDr0TbeCssfGH_g _model_server_result.datetime_utc '2024-12-03 23:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 1JZE # _exptl.entry_id 1JZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.507 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "LAMBDA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JZE _cell.length_a 53.43 _cell.length_b 61.76 _cell.length_c 68.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O ALA 1 A ALA 1 1_555 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A N ALA 1 A ALA 1 1_555 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc3 A N ALA 1 A ALA 1 4_565 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc4 A O ALA 1 A ALA 1 4_565 C CU CU . A CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A O GLY 45 A GLY 45 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc6 A ND1 HIS 46 A HIS 46 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc7 A NE2 HIS 83 A HIS 83 1_555 D RU DRU . A DRU 903 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A NE2 HIS 83 A HIS 83 1_555 E RU LRU . A LRU 904 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.079 ? metalc ? metalc9 A SG CYS 112 A CYS 112 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 A ND1 HIS 117 A HIS 117 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc11 A SD MET 121 A MET 121 1_555 B CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? # _chem_comp.formula 'C23 H19 N6 Ru 2' _chem_comp.formula_weight 480.507 _chem_comp.id LRU _chem_comp.mon_nstd_flag . _chem_comp.name "LAMBDA-BIS(2,2'-BIPYRIDINE)IMIDAZOLE RUTHENIUM (II)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CD2 NE2 LRU sing 249 n y CD2 CG LRU doub 250 n y NE2 CE1 LRU doub 251 n y CG ND1 LRU sing 252 n y CE1 ND1 LRU sing 253 n y C35 C36 LRU doub 254 n y C35 C34 LRU sing 255 n y ND1 RU LRU sing 256 n n C36 N37 LRU sing 257 n y C34 C33 LRU doub 258 n y N37 RU LRU sing 259 n n N37 C32 LRU doub 260 n y RU N2 LRU sing 261 n n RU N13 LRU sing 262 n n RU N26 LRU sing 263 n n C3 N2 LRU doub 264 n y C3 C4 LRU sing 265 n y C33 C32 LRU sing 266 n y C32 C31 LRU sing 267 n n N2 C7 LRU sing 268 n y C4 C5 LRU doub 269 n y N13 C12 LRU doub 270 n y N13 C8 LRU sing 271 n y C7 C8 LRU sing 272 n n C7 C6 LRU doub 273 n y C12 C11 LRU sing 274 n y C5 C6 LRU sing 275 n y C31 N26 LRU doub 276 n y C31 C30 LRU sing 277 n y N26 C27 LRU sing 278 n y C8 C9 LRU doub 279 n y C11 C10 LRU doub 280 n y C27 C28 LRU doub 281 n y C30 C29 LRU doub 282 n y C9 C10 LRU sing 283 n y C29 C28 LRU sing 284 n y C3 H1 LRU sing 285 n n C4 H2 LRU sing 286 n n C5 H3 LRU sing 287 n n C6 H4 LRU sing 288 n n C9 H5 LRU sing 289 n n C10 H6 LRU sing 290 n n C11 H7 LRU sing 291 n n C12 H8 LRU sing 292 n n C27 H9 LRU sing 293 n n C28 H10 LRU sing 294 n n C29 H11 LRU sing 295 n n C30 H12 LRU sing 296 n n C33 H13 LRU sing 297 n n C34 H14 LRU sing 298 n n C35 H15 LRU sing 299 n n C36 H16 LRU sing 300 n n CG H17 LRU sing 301 n n CD2 H18 LRU sing 302 n n CE1 H19 LRU sing 303 n n # _atom_sites.entry_id 1JZE _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 901 901 CU CU . C 2 CU A 1 902 902 CU CU . D 3 DRU A 1 903 903 DRU RUA . E 4 LRU A 1 904 904 LRU RUB . F 5 HOH A 1 331 331 HOH WAT . F 5 HOH A 2 332 332 HOH WAT . F 5 HOH A 3 333 333 HOH WAT . F 5 HOH A 4 334 334 HOH WAT . F 5 HOH A 5 335 335 HOH WAT . F 5 HOH A 6 336 336 HOH WAT . F 5 HOH A 7 337 337 HOH WAT . F 5 HOH A 8 338 338 HOH WAT . F 5 HOH A 9 339 339 HOH WAT . F 5 HOH A 10 341 341 HOH WAT . F 5 HOH A 11 342 342 HOH WAT . F 5 HOH A 12 343 343 HOH WAT . F 5 HOH A 13 344 344 HOH WAT . F 5 HOH A 14 345 345 HOH WAT . F 5 HOH A 15 346 346 HOH WAT . F 5 HOH A 16 347 347 HOH WAT . F 5 HOH A 17 348 348 HOH WAT . F 5 HOH A 18 349 349 HOH WAT . F 5 HOH A 19 351 351 HOH WAT . F 5 HOH A 20 352 352 HOH WAT . F 5 HOH A 21 353 353 HOH WAT . F 5 HOH A 22 354 354 HOH WAT . F 5 HOH A 23 355 355 HOH WAT . F 5 HOH A 24 356 356 HOH WAT . F 5 HOH A 25 357 357 HOH WAT . F 5 HOH A 26 358 358 HOH WAT . F 5 HOH A 27 359 359 HOH WAT . F 5 HOH A 28 360 360 HOH WAT . F 5 HOH A 29 361 361 HOH WAT . F 5 HOH A 30 362 362 HOH WAT . F 5 HOH A 31 363 363 HOH WAT . F 5 HOH A 32 364 364 HOH WAT . F 5 HOH A 33 365 365 HOH WAT . F 5 HOH A 34 366 366 HOH WAT . F 5 HOH A 35 367 367 HOH WAT . F 5 HOH A 36 368 368 HOH WAT . F 5 HOH A 37 369 369 HOH WAT . F 5 HOH A 38 370 370 HOH WAT . F 5 HOH A 39 371 371 HOH WAT . F 5 HOH A 40 372 372 HOH WAT . F 5 HOH A 41 373 373 HOH WAT . F 5 HOH A 42 374 374 HOH WAT . F 5 HOH A 43 375 375 HOH WAT . F 5 HOH A 44 376 376 HOH WAT . F 5 HOH A 45 377 377 HOH WAT . F 5 HOH A 46 378 378 HOH WAT . F 5 HOH A 47 379 379 HOH WAT . F 5 HOH A 48 380 380 HOH WAT . F 5 HOH A 49 381 381 HOH WAT . F 5 HOH A 50 382 382 HOH WAT . F 5 HOH A 51 383 383 HOH WAT . F 5 HOH A 52 384 384 HOH WAT . F 5 HOH A 53 385 385 HOH WAT . F 5 HOH A 54 386 386 HOH WAT . F 5 HOH A 55 387 387 HOH WAT . F 5 HOH A 56 388 388 HOH WAT . F 5 HOH A 57 389 389 HOH WAT . F 5 HOH A 58 390 390 HOH WAT . F 5 HOH A 59 391 391 HOH WAT . F 5 HOH A 60 392 392 HOH WAT . F 5 HOH A 61 394 394 HOH WAT . F 5 HOH A 62 395 395 HOH WAT . F 5 HOH A 63 396 396 HOH WAT . F 5 HOH A 64 397 397 HOH WAT . F 5 HOH A 65 398 398 HOH WAT . F 5 HOH A 66 399 399 HOH WAT . F 5 HOH A 67 400 400 HOH WAT . F 5 HOH A 68 401 401 HOH WAT . F 5 HOH A 69 402 402 HOH WAT . F 5 HOH A 70 403 403 HOH WAT . F 5 HOH A 71 404 404 HOH WAT . F 5 HOH A 72 405 405 HOH WAT . F 5 HOH A 73 406 406 HOH WAT . F 5 HOH A 74 407 407 HOH WAT . F 5 HOH A 75 408 408 HOH WAT . F 5 HOH A 76 409 409 HOH WAT . F 5 HOH A 77 410 410 HOH WAT . F 5 HOH A 78 411 411 HOH WAT . F 5 HOH A 79 412 412 HOH WAT . F 5 HOH A 80 413 413 HOH WAT . F 5 HOH A 81 414 414 HOH WAT . F 5 HOH A 82 415 415 HOH WAT . F 5 HOH A 83 416 416 HOH WAT . F 5 HOH A 84 417 417 HOH WAT . F 5 HOH A 85 418 418 HOH WAT . F 5 HOH A 86 419 419 HOH WAT . F 5 HOH A 87 420 420 HOH WAT . F 5 HOH A 88 421 421 HOH WAT . F 5 HOH A 89 422 422 HOH WAT . F 5 HOH A 90 424 424 HOH WAT . F 5 HOH A 91 425 425 HOH WAT . F 5 HOH A 92 426 426 HOH WAT . F 5 HOH A 93 427 427 HOH WAT . F 5 HOH A 94 428 428 HOH WAT . F 5 HOH A 95 429 429 HOH WAT . F 5 HOH A 96 430 430 HOH WAT . F 5 HOH A 97 431 431 HOH WAT . F 5 HOH A 98 432 432 HOH WAT . F 5 HOH A 99 433 433 HOH WAT . F 5 HOH A 100 434 434 HOH WAT . F 5 HOH A 101 435 435 HOH WAT . F 5 HOH A 102 436 436 HOH WAT . F 5 HOH A 103 437 437 HOH WAT . F 5 HOH A 104 438 438 HOH WAT . F 5 HOH A 105 439 439 HOH WAT . F 5 HOH A 106 440 440 HOH WAT . F 5 HOH A 107 441 441 HOH WAT . F 5 HOH A 108 442 442 HOH WAT . F 5 HOH A 109 443 443 HOH WAT . F 5 HOH A 110 444 444 HOH WAT . F 5 HOH A 111 445 445 HOH WAT . F 5 HOH A 112 446 446 HOH WAT . F 5 HOH A 113 447 447 HOH WAT . F 5 HOH A 114 448 448 HOH WAT . F 5 HOH A 115 449 449 HOH WAT . F 5 HOH A 116 450 450 HOH WAT . F 5 HOH A 117 451 451 HOH WAT . F 5 HOH A 118 452 452 HOH WAT . F 5 HOH A 119 453 453 HOH WAT . F 5 HOH A 120 454 454 HOH WAT . F 5 HOH A 121 455 455 HOH WAT . F 5 HOH A 122 456 456 HOH WAT . F 5 HOH A 123 457 457 HOH WAT . F 5 HOH A 124 468 468 HOH WAT . F 5 HOH A 125 469 469 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RU RU LRU . B . E 4 18.916 11.183 16.859 0.5 24.17 ? RU LRU 904 A 1 HETATM 2 N N2 LRU . B . E 4 18.86 13.164 17.468 0.5 26.49 ? N2 LRU 904 A 1 HETATM 3 C C3 LRU . B . E 4 17.942 14.07 17.06 0.5 27.24 ? C3 LRU 904 A 1 HETATM 4 C C4 LRU . B . E 4 17.943 15.387 17.515 0.5 28.23 ? C4 LRU 904 A 1 HETATM 5 C C5 LRU . B . E 4 18.931 15.745 18.408 0.5 27.7 ? C5 LRU 904 A 1 HETATM 6 C C6 LRU . B . E 4 19.86 14.835 18.824 0.5 27.6 ? C6 LRU 904 A 1 HETATM 7 C C7 LRU . B . E 4 19.832 13.524 18.338 0.5 27.18 ? C7 LRU 904 A 1 HETATM 8 C C8 LRU . B . E 4 20.757 12.456 18.69 0.5 27.56 ? C8 LRU 904 A 1 HETATM 9 C C9 LRU . B . E 4 21.793 12.638 19.567 0.5 28.23 ? C9 LRU 904 A 1 HETATM 10 C C10 LRU . B . E 4 22.639 11.584 19.849 0.5 28.5 ? C10 LRU 904 A 1 HETATM 11 C C11 LRU . B . E 4 22.403 10.351 19.24 0.5 28.43 ? C11 LRU 904 A 1 HETATM 12 C C12 LRU . B . E 4 21.362 10.21 18.374 0.5 27.68 ? C12 LRU 904 A 1 HETATM 13 N N13 LRU . B . E 4 20.547 11.253 18.1 0.5 26.43 ? N13 LRU 904 A 1 HETATM 14 N N26 LRU . B . E 4 17.767 10.385 18.434 0.5 24.64 ? N26 LRU 904 A 1 HETATM 15 C C27 LRU . B . E 4 17.181 11.086 19.449 0.5 24.57 ? C27 LRU 904 A 1 HETATM 16 C C28 LRU . B . E 4 16.444 10.461 20.496 0.5 24.84 ? C28 LRU 904 A 1 HETATM 17 C C29 LRU . B . E 4 16.293 9.06 20.489 0.5 24.13 ? C29 LRU 904 A 1 HETATM 18 C C30 LRU . B . E 4 16.885 8.363 19.458 0.5 24.31 ? C30 LRU 904 A 1 HETATM 19 C C31 LRU . B . E 4 17.614 9.027 18.428 0.5 23.95 ? C31 LRU 904 A 1 HETATM 20 C C32 LRU . B . E 4 18.267 8.35 17.317 0.5 23.47 ? C32 LRU 904 A 1 HETATM 21 C C33 LRU . B . E 4 18.209 6.959 17.171 0.5 23.18 ? C33 LRU 904 A 1 HETATM 22 C C34 LRU . B . E 4 18.833 6.371 16.108 0.5 23.25 ? C34 LRU 904 A 1 HETATM 23 C C35 LRU . B . E 4 19.523 7.155 15.201 0.5 22.76 ? C35 LRU 904 A 1 HETATM 24 C C36 LRU . B . E 4 19.564 8.533 15.378 0.5 22.68 ? C36 LRU 904 A 1 HETATM 25 N N37 LRU . B . E 4 18.941 9.137 16.44 0.5 23.87 ? N37 LRU 904 A 1 HETATM 26 C CG LRU . B . E 4 19.83 12.806 14.357 0.5 23.28 ? CG LRU 904 A 1 HETATM 27 C CD2 LRU . B . E 4 20.941 13.015 13.618 0.5 24.34 ? CD2 LRU 904 A 1 HETATM 28 N ND1 LRU . B . E 4 20.001 11.733 15.203 0.5 23.69 ? ND1 LRU 904 A 1 HETATM 29 C CE1 LRU . B . E 4 21.23 11.333 14.936 0.5 24.82 ? CE1 LRU 904 A 1 HETATM 30 N NE2 LRU . B . E 4 21.834 12.052 14.008 0.5 24.38 ? NE2 LRU 904 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #