data_1JZI # _model_server_result.job_id IpNITHGL7wtCd0VCOXP5yg _model_server_result.datetime_utc '2024-10-18 18:17:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 1JZI # _exptl.entry_id 1JZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.854 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRA(IMIDAZOLE)DIAQUACOPPER (II)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.1 _cell.angle_gamma 90 _cell.entry_id 1JZI _cell.length_a 93.95 _cell.length_b 50.99 _cell.length_c 62.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 3 B CYS 203 1_555 B SG CYS 26 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O GLY 45 A GLY 45 1_555 C CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 A ND1 HIS 46 A HIS 46 1_555 C CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc3 A NE2 HIS 83 A HIS 83 1_555 D RE REP . A REP 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A SG CYS 112 A CYS 112 1_555 C CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 A ND1 HIS 117 A HIS 117 1_555 C CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 A SD MET 121 A MET 121 1_555 C CU CU . A CU 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? metalc ? metalc7 B O GLY 45 B GLY 245 1_555 F CU CU . B CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc8 B ND1 HIS 46 B HIS 246 1_555 F CU CU . B CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc9 B NE2 HIS 83 B HIS 283 1_555 G RE REP . B REP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc10 B SG CYS 112 B CYS 312 1_555 F CU CU . B CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc11 B ND1 HIS 117 B HIS 317 1_555 F CU CU . B CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc12 B SD MET 121 B MET 321 1_555 F CU CU . B CU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.29 ? # _chem_comp.formula 'C12 H16 Cu N8 O2 2' _chem_comp.formula_weight 367.854 _chem_comp.id IME _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRA(IMIDAZOLE)DIAQUACOPPER (II)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CU O1 IME sing 173 n n CU O2 IME sing 174 n n CU NEC IME sing 175 n n CU NEM IME sing 176 n n CU NEW IME sing 177 n n CU NE6 IME sing 178 n n O1 HO1 IME sing 179 n n O2 HO2 IME sing 180 n n CG1 CDC IME doub 181 n y CG1 NDB IME sing 182 n y CG1 HG1 IME sing 183 n n CDC NEC IME sing 184 n y CDC HD21 IME sing 185 n n NDB CEB IME doub 186 n y CEB NEC IME sing 187 n y CEB HE11 IME sing 188 n n CG2 CDM IME doub 189 n y CG2 NDL IME sing 190 n y CG2 HG2 IME sing 191 n n CDM NEM IME sing 192 n y CDM HD22 IME sing 193 n n NDL CEL IME doub 194 n y CEL NEM IME sing 195 n y CEL HE12 IME sing 196 n n CG3 CDW IME doub 197 n y CG3 NDV IME sing 198 n y CG3 HG3 IME sing 199 n n CDW NEW IME sing 200 n y CDW HD23 IME sing 201 n n NDV CEV IME doub 202 n y CEV NEW IME sing 203 n y CEV HE13 IME sing 204 n n CG4 CD6 IME doub 205 n y CG4 ND5 IME sing 206 n y CG4 HG4 IME sing 207 n n CD6 NE6 IME sing 208 n y CD6 HD24 IME sing 209 n n ND5 CE5 IME doub 210 n y CE5 NE6 IME sing 211 n y CE5 HE14 IME sing 212 n n O1 H15 IME sing 213 n n O2 H16 IME sing 214 n n # _atom_sites.entry_id 1JZI _atom_sites.fract_transf_matrix[1][1] 0.010644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 901 901 CU CU . D 3 REP A 1 903 903 REP REP . E 4 IME A 1 2000 2000 IME CU . F 2 CU B 1 902 902 CU CU . G 3 REP B 1 904 904 REP REP . H 5 HOH A 1 1000 1000 HOH WAT . H 5 HOH A 2 1004 1004 HOH WAT . H 5 HOH A 3 1005 1005 HOH WAT . H 5 HOH A 4 1006 1006 HOH WAT . H 5 HOH A 5 1007 1007 HOH WAT . H 5 HOH A 6 1008 1008 HOH WAT . H 5 HOH A 7 1009 1009 HOH WAT . H 5 HOH A 8 1011 1011 HOH WAT . H 5 HOH A 9 1012 1012 HOH WAT . H 5 HOH A 10 1015 1015 HOH WAT . H 5 HOH A 11 1024 1024 HOH WAT . H 5 HOH A 12 1026 1026 HOH WAT . H 5 HOH A 13 1029 1029 HOH WAT . H 5 HOH A 14 1031 1031 HOH WAT . H 5 HOH A 15 1034 1034 HOH WAT . H 5 HOH A 16 1038 1038 HOH WAT . H 5 HOH A 17 1039 1039 HOH WAT . H 5 HOH A 18 1040 1040 HOH WAT . H 5 HOH A 19 1041 1041 HOH WAT . H 5 HOH A 20 1042 1042 HOH WAT . H 5 HOH A 21 1044 1044 HOH WAT . H 5 HOH A 22 1045 1045 HOH WAT . H 5 HOH A 23 1046 1046 HOH WAT . H 5 HOH A 24 1048 1048 HOH WAT . H 5 HOH A 25 1052 1052 HOH WAT . H 5 HOH A 26 1054 1054 HOH WAT . H 5 HOH A 27 1055 1055 HOH WAT . H 5 HOH A 28 1056 1056 HOH WAT . H 5 HOH A 29 1058 1058 HOH WAT . H 5 HOH A 30 1059 1059 HOH WAT . H 5 HOH A 31 1060 1060 HOH WAT . H 5 HOH A 32 1061 1061 HOH WAT . H 5 HOH A 33 1062 1062 HOH WAT . H 5 HOH A 34 1063 1063 HOH WAT . H 5 HOH A 35 1064 1064 HOH WAT . H 5 HOH A 36 1065 1065 HOH WAT . H 5 HOH A 37 1066 1066 HOH WAT . H 5 HOH A 38 1067 1067 HOH WAT . H 5 HOH A 39 1069 1069 HOH WAT . H 5 HOH A 40 1071 1071 HOH WAT . H 5 HOH A 41 1072 1072 HOH WAT . H 5 HOH A 42 1075 1075 HOH WAT . H 5 HOH A 43 1078 1078 HOH WAT . H 5 HOH A 44 1079 1079 HOH WAT . H 5 HOH A 45 1080 1080 HOH WAT . H 5 HOH A 46 1082 1082 HOH WAT . H 5 HOH A 47 1084 1084 HOH WAT . H 5 HOH A 48 1090 1090 HOH WAT . H 5 HOH A 49 1091 1091 HOH WAT . H 5 HOH A 50 1093 1093 HOH WAT . H 5 HOH A 51 1096 1096 HOH WAT . H 5 HOH A 52 1101 1101 HOH WAT . H 5 HOH A 53 1102 1102 HOH WAT . H 5 HOH A 54 1105 1105 HOH WAT . H 5 HOH A 55 1107 1107 HOH WAT . H 5 HOH A 56 1109 1109 HOH WAT . H 5 HOH A 57 1110 1110 HOH WAT . H 5 HOH A 58 1111 1111 HOH WAT . H 5 HOH A 59 1112 1112 HOH WAT . H 5 HOH A 60 1114 1114 HOH WAT . H 5 HOH A 61 1116 1116 HOH WAT . H 5 HOH A 62 1118 1118 HOH WAT . H 5 HOH A 63 1119 1119 HOH WAT . H 5 HOH A 64 1120 1120 HOH WAT . H 5 HOH A 65 1122 1122 HOH WAT . H 5 HOH A 66 1125 1125 HOH WAT . H 5 HOH A 67 1126 1126 HOH WAT . H 5 HOH A 68 1128 1128 HOH WAT . H 5 HOH A 69 1129 1129 HOH WAT . H 5 HOH A 70 1132 1132 HOH WAT . H 5 HOH A 71 1134 1134 HOH WAT . H 5 HOH A 72 1135 1135 HOH WAT . H 5 HOH A 73 1136 1136 HOH WAT . H 5 HOH A 74 1140 1140 HOH WAT . H 5 HOH A 75 1141 1141 HOH WAT . H 5 HOH A 76 1142 1142 HOH WAT . H 5 HOH A 77 1143 1143 HOH WAT . H 5 HOH A 78 1144 1144 HOH WAT . H 5 HOH A 79 1145 1145 HOH WAT . H 5 HOH A 80 1146 1146 HOH WAT . H 5 HOH A 81 1147 1147 HOH WAT . H 5 HOH A 82 1148 1148 HOH WAT . H 5 HOH A 83 1149 1149 HOH WAT . H 5 HOH A 84 1150 1150 HOH WAT . H 5 HOH A 85 1151 1151 HOH WAT . H 5 HOH A 86 1152 1152 HOH WAT . I 5 HOH B 1 1001 1001 HOH WAT . I 5 HOH B 2 1002 1002 HOH WAT . I 5 HOH B 3 1003 1003 HOH WAT . I 5 HOH B 4 1010 1010 HOH WAT . I 5 HOH B 5 1013 1013 HOH WAT . I 5 HOH B 6 1014 1014 HOH WAT . I 5 HOH B 7 1016 1016 HOH WAT . I 5 HOH B 8 1017 1017 HOH WAT . I 5 HOH B 9 1018 1018 HOH WAT . I 5 HOH B 10 1019 1019 HOH WAT . I 5 HOH B 11 1020 1020 HOH WAT . I 5 HOH B 12 1021 1021 HOH WAT . I 5 HOH B 13 1022 1022 HOH WAT . I 5 HOH B 14 1023 1023 HOH WAT . I 5 HOH B 15 1025 1025 HOH WAT . I 5 HOH B 16 1027 1027 HOH WAT . I 5 HOH B 17 1028 1028 HOH WAT . I 5 HOH B 18 1030 1030 HOH WAT . I 5 HOH B 19 1032 1032 HOH WAT . I 5 HOH B 20 1033 1033 HOH WAT . I 5 HOH B 21 1035 1035 HOH WAT . I 5 HOH B 22 1036 1036 HOH WAT . I 5 HOH B 23 1037 1037 HOH WAT . I 5 HOH B 24 1043 1043 HOH WAT . I 5 HOH B 25 1047 1047 HOH WAT . I 5 HOH B 26 1049 1049 HOH WAT . I 5 HOH B 27 1050 1050 HOH WAT . I 5 HOH B 28 1051 1051 HOH WAT . I 5 HOH B 29 1053 1053 HOH WAT . I 5 HOH B 30 1057 1057 HOH WAT . I 5 HOH B 31 1068 1068 HOH WAT . I 5 HOH B 32 1070 1070 HOH WAT . I 5 HOH B 33 1073 1073 HOH WAT . I 5 HOH B 34 1074 1074 HOH WAT . I 5 HOH B 35 1076 1076 HOH WAT . I 5 HOH B 36 1077 1077 HOH WAT . I 5 HOH B 37 1081 1081 HOH WAT . I 5 HOH B 38 1083 1083 HOH WAT . I 5 HOH B 39 1085 1085 HOH WAT . I 5 HOH B 40 1086 1086 HOH WAT . I 5 HOH B 41 1087 1087 HOH WAT . I 5 HOH B 42 1088 1088 HOH WAT . I 5 HOH B 43 1089 1089 HOH WAT . I 5 HOH B 44 1092 1092 HOH WAT . I 5 HOH B 45 1094 1094 HOH WAT . I 5 HOH B 46 1095 1095 HOH WAT . I 5 HOH B 47 1098 1098 HOH WAT . I 5 HOH B 48 1099 1099 HOH WAT . I 5 HOH B 49 1100 1100 HOH WAT . I 5 HOH B 50 1103 1103 HOH WAT . I 5 HOH B 51 1104 1104 HOH WAT . I 5 HOH B 52 1106 1106 HOH WAT . I 5 HOH B 53 1108 1108 HOH WAT . I 5 HOH B 54 1113 1113 HOH WAT . I 5 HOH B 55 1115 1115 HOH WAT . I 5 HOH B 56 1117 1117 HOH WAT . I 5 HOH B 57 1121 1121 HOH WAT . I 5 HOH B 58 1123 1123 HOH WAT . I 5 HOH B 59 1124 1124 HOH WAT . I 5 HOH B 60 1127 1127 HOH WAT . I 5 HOH B 61 1130 1130 HOH WAT . I 5 HOH B 62 1131 1131 HOH WAT . I 5 HOH B 63 1133 1133 HOH WAT . I 5 HOH B 64 1137 1137 HOH WAT . I 5 HOH B 65 1138 1138 HOH WAT . I 5 HOH B 66 1139 1139 HOH WAT . I 5 HOH B 67 1153 1153 HOH WAT . I 5 HOH B 68 1154 1154 HOH WAT . I 5 HOH B 69 1155 1155 HOH WAT . I 5 HOH B 70 1156 1156 HOH WAT . I 5 HOH B 71 1157 1157 HOH WAT . I 5 HOH B 72 1158 1158 HOH WAT . I 5 HOH B 73 1159 1159 HOH WAT . I 5 HOH B 74 1160 1160 HOH WAT . I 5 HOH B 75 1161 1161 HOH WAT . I 5 HOH B 76 1162 1162 HOH WAT . I 5 HOH B 77 1163 1163 HOH WAT . I 5 HOH B 78 1164 1164 HOH WAT . I 5 HOH B 79 1165 1165 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CU CU IME . . . E 4 -4.806 -15.263 6.535 1 16.18 ? CU IME 2000 A 1 HETATM 2 O O1 IME . . . E 4 -4.802 -12.75 6.884 1 16.28 ? O1 IME 2000 A 1 HETATM 3 O O2 IME . . . E 4 -5.096 -17.759 6.42 1 16.12 ? O2 IME 2000 A 1 HETATM 4 C CG1 IME . . . E 4 -2.223 -14.655 3.31 1 17.52 ? CG1 IME 2000 A 1 HETATM 5 C CDC IME . . . E 4 -2.985 -14.225 4.342 1 17.37 ? CDC IME 2000 A 1 HETATM 6 N NDB IME . . . E 4 -2.254 -16.031 3.324 1 17.54 ? NDB IME 2000 A 1 HETATM 7 C CEB IME . . . E 4 -3.023 -16.375 4.344 1 17.38 ? CEB IME 2000 A 1 HETATM 8 N NEC IME . . . E 4 -3.493 -15.322 4.996 1 16.84 ? NEC IME 2000 A 1 HETATM 9 C CG2 IME . . . E 4 -8.03 -16.002 3.887 1 15.87 ? CG2 IME 2000 A 1 HETATM 10 C CDM IME . . . E 4 -7.317 -16.213 5.018 1 15.88 ? CDM IME 2000 A 1 HETATM 11 N NDL IME . . . E 4 -7.446 -14.933 3.245 1 16.23 ? NDL IME 2000 A 1 HETATM 12 C CEL IME . . . E 4 -6.459 -14.634 4.07 1 16.19 ? CEL IME 2000 A 1 HETATM 13 N NEM IME . . . E 4 -6.273 -15.332 5.177 1 15.96 ? NEM IME 2000 A 1 HETATM 14 C CG3 IME . . . E 4 -7.401 -16.014 9.654 1 14.55 ? CG3 IME 2000 A 1 HETATM 15 C CDW IME . . . E 4 -6.545 -16.403 8.68 1 15.05 ? CDW IME 2000 A 1 HETATM 16 N NDV IME . . . E 4 -7.544 -14.644 9.655 1 14.68 ? NDV IME 2000 A 1 HETATM 17 C CEV IME . . . E 4 -6.75 -14.28 8.664 1 14.9 ? CEV IME 2000 A 1 HETATM 18 N NEW IME . . . E 4 -6.124 -15.262 8.039 1 15.24 ? NEW IME 2000 A 1 HETATM 19 C CG4 IME . . . E 4 -1.115 -15.784 8.786 1 14.97 ? CG4 IME 2000 A 1 HETATM 20 C CD6 IME . . . E 4 -1.969 -16.076 7.777 1 15.14 ? CD6 IME 2000 A 1 HETATM 21 N ND5 IME . . . E 4 -1.826 -14.771 9.392 1 15.23 ? ND5 IME 2000 A 1 HETATM 22 C CE5 IME . . . E 4 -2.91 -14.672 8.648 1 15.31 ? CE5 IME 2000 A 1 HETATM 23 N NE6 IME . . . E 4 -3.162 -15.421 7.587 1 15.28 ? NE6 IME 2000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #