data_1JZM # _model_server_result.job_id yGjdi1zfkOlyyhWLR-2M0A _model_server_result.datetime_utc '2024-10-14 06:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":147}' # _entry.id 1JZM # _exptl.entry_id 1JZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JZM _cell.length_a 91.82 _cell.length_b 44.49 _cell.length_c 143.93 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 B NE2 HIS 101 B HIS 101 1_555 D FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1JZM _atom_sites.fract_transf_matrix[1][1] 0.010891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 2 HEM B 1 147 147 HEM HEM . E 3 HOH A 1 148 2 HOH TIP . E 3 HOH A 2 149 3 HOH TIP . E 3 HOH A 3 150 4 HOH TIP . E 3 HOH A 4 151 6 HOH TIP . E 3 HOH A 5 152 11 HOH TIP . E 3 HOH A 6 153 12 HOH TIP . E 3 HOH A 7 154 13 HOH TIP . E 3 HOH A 8 155 16 HOH TIP . E 3 HOH A 9 156 17 HOH TIP . E 3 HOH A 10 157 18 HOH TIP . E 3 HOH A 11 158 19 HOH TIP . E 3 HOH A 12 159 20 HOH TIP . E 3 HOH A 13 160 21 HOH TIP . E 3 HOH A 14 161 24 HOH TIP . E 3 HOH A 15 162 26 HOH TIP . E 3 HOH A 16 163 29 HOH TIP . E 3 HOH A 17 164 30 HOH TIP . E 3 HOH A 18 165 36 HOH TIP . E 3 HOH A 19 166 43 HOH TIP . E 3 HOH A 20 167 44 HOH TIP . E 3 HOH A 21 168 46 HOH TIP . E 3 HOH A 22 169 47 HOH TIP . E 3 HOH A 23 170 50 HOH TIP . E 3 HOH A 24 171 51 HOH TIP . E 3 HOH A 25 172 52 HOH TIP . E 3 HOH A 26 173 53 HOH TIP . E 3 HOH A 27 174 54 HOH TIP . E 3 HOH A 28 175 55 HOH TIP . E 3 HOH A 29 176 59 HOH TIP . E 3 HOH A 30 177 63 HOH TIP . E 3 HOH A 31 178 64 HOH TIP . E 3 HOH A 32 179 65 HOH TIP . E 3 HOH A 33 180 66 HOH TIP . E 3 HOH A 34 181 68 HOH TIP . E 3 HOH A 35 182 70 HOH TIP . E 3 HOH A 36 183 71 HOH TIP . E 3 HOH A 37 184 73 HOH TIP . E 3 HOH A 38 185 76 HOH TIP . E 3 HOH A 39 186 79 HOH TIP . E 3 HOH A 40 187 80 HOH TIP . E 3 HOH A 41 188 82 HOH TIP . E 3 HOH A 42 189 83 HOH TIP . E 3 HOH A 43 190 84 HOH TIP . E 3 HOH A 44 191 89 HOH TIP . E 3 HOH A 45 192 90 HOH TIP . E 3 HOH A 46 193 91 HOH TIP . E 3 HOH A 47 194 92 HOH TIP . E 3 HOH A 48 195 93 HOH TIP . E 3 HOH A 49 196 94 HOH TIP . E 3 HOH A 50 197 95 HOH TIP . E 3 HOH A 51 198 97 HOH TIP . E 3 HOH A 52 199 99 HOH TIP . E 3 HOH A 53 200 101 HOH TIP . E 3 HOH A 54 201 103 HOH TIP . E 3 HOH A 55 202 106 HOH TIP . E 3 HOH A 56 203 107 HOH TIP . E 3 HOH A 57 204 108 HOH TIP . E 3 HOH A 58 205 110 HOH TIP . E 3 HOH A 59 206 113 HOH TIP . E 3 HOH A 60 207 114 HOH TIP . E 3 HOH A 61 208 115 HOH TIP . E 3 HOH A 62 209 116 HOH TIP . E 3 HOH A 63 210 119 HOH TIP . E 3 HOH A 64 211 122 HOH TIP . E 3 HOH A 65 212 125 HOH TIP . E 3 HOH A 66 213 129 HOH TIP . E 3 HOH A 67 214 131 HOH TIP . E 3 HOH A 68 215 132 HOH TIP . E 3 HOH A 69 216 133 HOH TIP . E 3 HOH A 70 217 134 HOH TIP . E 3 HOH A 71 218 136 HOH TIP . E 3 HOH A 72 219 137 HOH TIP . E 3 HOH A 73 220 144 HOH TIP . E 3 HOH A 74 221 145 HOH TIP . E 3 HOH A 75 222 146 HOH TIP . F 3 HOH B 1 148 1 HOH TIP . F 3 HOH B 2 149 5 HOH TIP . F 3 HOH B 3 150 7 HOH TIP . F 3 HOH B 4 151 8 HOH TIP . F 3 HOH B 5 152 9 HOH TIP . F 3 HOH B 6 153 10 HOH TIP . F 3 HOH B 7 154 14 HOH TIP . F 3 HOH B 8 155 15 HOH TIP . F 3 HOH B 9 156 22 HOH TIP . F 3 HOH B 10 157 23 HOH TIP . F 3 HOH B 11 158 25 HOH TIP . F 3 HOH B 12 159 27 HOH TIP . F 3 HOH B 13 160 28 HOH TIP . F 3 HOH B 14 161 31 HOH TIP . F 3 HOH B 15 162 32 HOH TIP . F 3 HOH B 16 163 33 HOH TIP . F 3 HOH B 17 164 34 HOH TIP . F 3 HOH B 18 165 35 HOH TIP . F 3 HOH B 19 166 37 HOH TIP . F 3 HOH B 20 167 38 HOH TIP . F 3 HOH B 21 168 39 HOH TIP . F 3 HOH B 22 169 40 HOH TIP . F 3 HOH B 23 170 41 HOH TIP . F 3 HOH B 24 171 42 HOH TIP . F 3 HOH B 25 172 45 HOH TIP . F 3 HOH B 26 173 48 HOH TIP . F 3 HOH B 27 174 49 HOH TIP . F 3 HOH B 28 175 56 HOH TIP . F 3 HOH B 29 176 57 HOH TIP . F 3 HOH B 30 177 58 HOH TIP . F 3 HOH B 31 178 60 HOH TIP . F 3 HOH B 32 179 61 HOH TIP . F 3 HOH B 33 180 62 HOH TIP . F 3 HOH B 34 181 67 HOH TIP . F 3 HOH B 35 182 69 HOH TIP . F 3 HOH B 36 183 72 HOH TIP . F 3 HOH B 37 184 74 HOH TIP . F 3 HOH B 38 185 75 HOH TIP . F 3 HOH B 39 186 77 HOH TIP . F 3 HOH B 40 187 78 HOH TIP . F 3 HOH B 41 188 81 HOH TIP . F 3 HOH B 42 189 85 HOH TIP . F 3 HOH B 43 190 86 HOH TIP . F 3 HOH B 44 191 87 HOH TIP . F 3 HOH B 45 192 88 HOH TIP . F 3 HOH B 46 193 96 HOH TIP . F 3 HOH B 47 194 98 HOH TIP . F 3 HOH B 48 195 100 HOH TIP . F 3 HOH B 49 196 102 HOH TIP . F 3 HOH B 50 197 104 HOH TIP . F 3 HOH B 51 198 105 HOH TIP . F 3 HOH B 52 199 109 HOH TIP . F 3 HOH B 53 200 111 HOH TIP . F 3 HOH B 54 201 112 HOH TIP . F 3 HOH B 55 202 117 HOH TIP . F 3 HOH B 56 203 118 HOH TIP . F 3 HOH B 57 204 120 HOH TIP . F 3 HOH B 58 205 121 HOH TIP . F 3 HOH B 59 206 123 HOH TIP . F 3 HOH B 60 207 124 HOH TIP . F 3 HOH B 61 208 126 HOH TIP . F 3 HOH B 62 209 127 HOH TIP . F 3 HOH B 63 210 128 HOH TIP . F 3 HOH B 64 211 130 HOH TIP . F 3 HOH B 65 212 135 HOH TIP . F 3 HOH B 66 213 138 HOH TIP . F 3 HOH B 67 214 139 HOH TIP . F 3 HOH B 68 215 140 HOH TIP . F 3 HOH B 69 216 141 HOH TIP . F 3 HOH B 70 217 142 HOH TIP . F 3 HOH B 71 218 143 HOH TIP . F 3 HOH B 72 219 147 HOH TIP . F 3 HOH B 73 220 148 HOH TIP . F 3 HOH B 74 221 149 HOH TIP . F 3 HOH B 75 222 150 HOH TIP . F 3 HOH B 76 223 151 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 16.685 9.82 17.528 1 11.79 ? CHA HEM 147 A 1 HETATM 2 C CHB HEM . . . C 2 14.806 8.628 21.806 1 11.67 ? CHB HEM 147 A 1 HETATM 3 C CHC HEM . . . C 2 19.089 6.882 23.23 1 11.64 ? CHC HEM 147 A 1 HETATM 4 C CHD HEM . . . C 2 20.913 7.857 18.871 1 11.51 ? CHD HEM 147 A 1 HETATM 5 C C1A HEM . . . C 2 15.765 9.489 18.519 1 10.87 ? C1A HEM 147 A 1 HETATM 6 C C2A HEM . . . C 2 14.357 9.874 18.497 1 11.95 ? C2A HEM 147 A 1 HETATM 7 C C3A HEM . . . C 2 13.857 9.579 19.704 1 11.54 ? C3A HEM 147 A 1 HETATM 8 C C4A HEM . . . C 2 14.934 8.989 20.473 1 9.26 ? C4A HEM 147 A 1 HETATM 9 C CMA HEM . . . C 2 12.394 9.751 20.121 1 9.75 ? CMA HEM 147 A 1 HETATM 10 C CAA HEM . . . C 2 13.499 10.423 17.358 1 13.53 ? CAA HEM 147 A 1 HETATM 11 C CBA HEM . . . C 2 12.882 9.321 16.503 1 14.56 ? CBA HEM 147 A 1 HETATM 12 C CGA HEM . . . C 2 13.914 8.577 15.678 1 18.19 ? CGA HEM 147 A 1 HETATM 13 O O1A HEM . . . C 2 14.485 9.192 14.752 1 16.44 ? O1A HEM 147 A 1 HETATM 14 O O2A HEM . . . C 2 14.159 7.385 15.957 1 17.94 ? O2A HEM 147 A 1 HETATM 15 C C1B HEM . . . C 2 15.795 7.991 22.536 1 11.1 ? C1B HEM 147 A 1 HETATM 16 C C2B HEM . . . C 2 15.618 7.572 23.929 1 11.16 ? C2B HEM 147 A 1 HETATM 17 C C3B HEM . . . C 2 16.826 7.101 24.347 1 9.07 ? C3B HEM 147 A 1 HETATM 18 C C4B HEM . . . C 2 17.734 7.215 23.196 1 13.06 ? C4B HEM 147 A 1 HETATM 19 C CMB HEM . . . C 2 14.296 7.601 24.71 1 11.12 ? CMB HEM 147 A 1 HETATM 20 C CAB HEM . . . C 2 17.158 6.553 25.589 1 15.69 ? CAB HEM 147 A 1 HETATM 21 C CBB HEM . . . C 2 16.65 6.979 26.859 1 17.97 ? CBB HEM 147 A 1 HETATM 22 C C1C HEM . . . C 2 19.932 6.918 22.133 1 10.41 ? C1C HEM 147 A 1 HETATM 23 C C2C HEM . . . C 2 21.354 6.593 22.19 1 13.58 ? C2C HEM 147 A 1 HETATM 24 C C3C HEM . . . C 2 21.873 6.856 20.958 1 14.19 ? C3C HEM 147 A 1 HETATM 25 C C4C HEM . . . C 2 20.754 7.322 20.143 1 12.91 ? C4C HEM 147 A 1 HETATM 26 C CMC HEM . . . C 2 22.089 6.059 23.423 1 14.01 ? CMC HEM 147 A 1 HETATM 27 C CAC HEM . . . C 2 23.195 6.738 20.492 1 17.24 ? CAC HEM 147 A 1 HETATM 28 C CBC HEM . . . C 2 24.371 6.284 21.197 1 16.92 ? CBC HEM 147 A 1 HETATM 29 C C1D HEM . . . C 2 19.921 8.505 18.155 1 10.78 ? C1D HEM 147 A 1 HETATM 30 C C2D HEM . . . C 2 20.187 9.262 16.942 1 12.54 ? C2D HEM 147 A 1 HETATM 31 C C3D HEM . . . C 2 19.029 9.872 16.616 1 13.7 ? C3D HEM 147 A 1 HETATM 32 C C4D HEM . . . C 2 18.027 9.454 17.587 1 14.22 ? C4D HEM 147 A 1 HETATM 33 C CMD HEM . . . C 2 21.515 9.43 16.198 1 15.43 ? CMD HEM 147 A 1 HETATM 34 C CAD HEM . . . C 2 18.872 10.879 15.479 1 14.67 ? CAD HEM 147 A 1 HETATM 35 C CBD HEM . . . C 2 19.212 12.296 15.939 1 15.15 ? CBD HEM 147 A 1 HETATM 36 C CGD HEM . . . C 2 18.972 13.336 14.859 1 18.54 ? CGD HEM 147 A 1 HETATM 37 O O1D HEM . . . C 2 19.679 13.304 13.833 1 17.21 ? O1D HEM 147 A 1 HETATM 38 O O2D HEM . . . C 2 18.073 14.184 15.03 1 21.49 ? O2D HEM 147 A 1 HETATM 39 N NA HEM . . . C 2 16.087 8.845 19.709 1 14.1 ? NA HEM 147 A 1 HETATM 40 N NB HEM . . . C 2 17.073 7.695 22.067 1 12.15 ? NB HEM 147 A 1 HETATM 41 N NC HEM . . . C 2 19.552 7.322 20.852 1 12.86 ? NC HEM 147 A 1 HETATM 42 N ND HEM . . . C 2 18.591 8.624 18.566 1 11.44 ? ND HEM 147 A 1 HETATM 43 FE FE HEM . . . C 2 17.744 7.809 20.179 1 13.78 ? FE HEM 147 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #