data_1K0C # _model_server_result.job_id nqAKoyzn5GyZ9uaCr8I7KA _model_server_result.datetime_utc '2025-03-01 07:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":357}' # _entry.id 1K0C # _exptl.entry_id 1K0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.444 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-(P-NITROBENZYL)GLUTATHIONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K0C _cell.length_a 54.736 _cell.length_b 123.214 _cell.length_c 168.182 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C17 H22 N4 O8 S' _chem_comp.formula_weight 442.444 _chem_comp.id GTB _chem_comp.mon_nstd_flag . _chem_comp.name S-(P-NITROBENZYL)GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTB sing 152 n n N1 HN11 GTB sing 153 n n N1 HN12 GTB sing 154 n n CA1 C1 GTB sing 155 n n CA1 CB1 GTB sing 156 n n CA1 HA1 GTB sing 157 n n C1 O11 GTB doub 158 n n C1 O12 GTB sing 159 n n CB1 CG1 GTB sing 160 n n CB1 HB11 GTB sing 161 n n CB1 HB12 GTB sing 162 n n CG1 CD1 GTB sing 163 n n CG1 HG11 GTB sing 164 n n CG1 HG12 GTB sing 165 n n CD1 OE1 GTB doub 166 n n CD1 N2 GTB sing 167 n n N2 CA2 GTB sing 168 n n N2 HN2 GTB sing 169 n n CA2 C2 GTB sing 170 n n CA2 CB2 GTB sing 171 n n CA2 HA2 GTB sing 172 n n C2 O2 GTB doub 173 n n C2 N3 GTB sing 174 n n CB2 SG2 GTB sing 175 n n CB2 HB21 GTB sing 176 n n CB2 HB22 GTB sing 177 n n SG2 C' GTB sing 178 n n N3 CA3 GTB sing 179 n n N3 HN3 GTB sing 180 n n CA3 C3 GTB sing 181 n n CA3 HA31 GTB sing 182 n n CA3 HA32 GTB sing 183 n n C3 O31 GTB doub 184 n n C3 O32 GTB sing 185 n n C' C1' GTB sing 186 n n C' "H'1" GTB sing 187 n n C' "H'2" GTB sing 188 n n C1' C2' GTB doub 189 n y C1' C6' GTB sing 190 n y C2' C3' GTB sing 191 n y C2' H2' GTB sing 192 n n C3' C4' GTB doub 193 n y C3' H3' GTB sing 194 n n C4' N41 GTB sing 195 n n C4' C5' GTB sing 196 n y N41 O41 GTB sing 197 n n N41 O42 GTB doub 198 n n C5' C6' GTB doub 199 n y C5' H5' GTB sing 200 n n C6' H6' GTB sing 201 n n O12 HO1 GTB sing 202 n n O32 HO3 GTB sing 203 n n # _atom_sites.entry_id 1K0C _atom_sites.fract_transf_matrix[1][1] 0.01827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GTB A 1 355 355 GTB GTB . F 2 GTB B 1 356 355 GTB GTB . G 2 GTB C 1 357 355 GTB GTB . H 3 GSH D 1 358 355 GSH GTT . I 4 HOH A 1 356 2 HOH HOH . I 4 HOH A 2 357 12 HOH HOH . I 4 HOH A 3 358 13 HOH HOH . I 4 HOH A 4 359 15 HOH HOH . I 4 HOH A 5 360 17 HOH HOH . I 4 HOH A 6 361 19 HOH HOH . I 4 HOH A 7 362 41 HOH HOH . I 4 HOH A 8 363 50 HOH HOH . I 4 HOH A 9 364 52 HOH HOH . I 4 HOH A 10 365 56 HOH HOH . I 4 HOH A 11 366 57 HOH HOH . I 4 HOH A 12 367 59 HOH HOH . I 4 HOH A 13 368 61 HOH HOH . I 4 HOH A 14 369 62 HOH HOH . I 4 HOH A 15 370 69 HOH HOH . I 4 HOH A 16 371 72 HOH HOH . I 4 HOH A 17 372 82 HOH HOH . I 4 HOH A 18 373 86 HOH HOH . I 4 HOH A 19 374 88 HOH HOH . I 4 HOH A 20 375 96 HOH HOH . I 4 HOH A 21 376 105 HOH HOH . I 4 HOH A 22 377 107 HOH HOH . I 4 HOH A 23 378 108 HOH HOH . I 4 HOH A 24 379 112 HOH HOH . I 4 HOH A 25 380 118 HOH HOH . I 4 HOH A 26 381 126 HOH HOH . I 4 HOH A 27 382 131 HOH HOH . I 4 HOH A 28 383 133 HOH HOH . I 4 HOH A 29 384 137 HOH HOH . I 4 HOH A 30 385 140 HOH HOH . I 4 HOH A 31 386 143 HOH HOH . I 4 HOH A 32 387 154 HOH HOH . I 4 HOH A 33 388 156 HOH HOH . J 4 HOH B 1 357 7 HOH HOH . J 4 HOH B 2 358 9 HOH HOH . J 4 HOH B 3 359 26 HOH HOH . J 4 HOH B 4 360 27 HOH HOH . J 4 HOH B 5 361 32 HOH HOH . J 4 HOH B 6 362 35 HOH HOH . J 4 HOH B 7 363 37 HOH HOH . J 4 HOH B 8 364 39 HOH HOH . J 4 HOH B 9 365 40 HOH HOH . J 4 HOH B 10 366 42 HOH HOH . J 4 HOH B 11 367 55 HOH HOH . J 4 HOH B 12 368 58 HOH HOH . J 4 HOH B 13 369 63 HOH HOH . J 4 HOH B 14 370 66 HOH HOH . J 4 HOH B 15 371 67 HOH HOH . J 4 HOH B 16 372 75 HOH HOH . J 4 HOH B 17 373 76 HOH HOH . J 4 HOH B 18 374 92 HOH HOH . J 4 HOH B 19 375 98 HOH HOH . J 4 HOH B 20 376 104 HOH HOH . J 4 HOH B 21 377 122 HOH HOH . J 4 HOH B 22 378 128 HOH HOH . J 4 HOH B 23 379 130 HOH HOH . J 4 HOH B 24 380 136 HOH HOH . J 4 HOH B 25 381 142 HOH HOH . J 4 HOH B 26 382 144 HOH HOH . J 4 HOH B 27 383 147 HOH HOH . J 4 HOH B 28 384 150 HOH HOH . J 4 HOH B 29 385 158 HOH HOH . K 4 HOH C 1 358 3 HOH HOH . K 4 HOH C 2 359 4 HOH HOH . K 4 HOH C 3 360 6 HOH HOH . K 4 HOH C 4 361 8 HOH HOH . K 4 HOH C 5 362 11 HOH HOH . K 4 HOH C 6 363 16 HOH HOH . K 4 HOH C 7 364 18 HOH HOH . K 4 HOH C 8 365 21 HOH HOH . K 4 HOH C 9 366 25 HOH HOH . K 4 HOH C 10 367 33 HOH HOH . K 4 HOH C 11 368 38 HOH HOH . K 4 HOH C 12 369 44 HOH HOH . K 4 HOH C 13 370 46 HOH HOH . K 4 HOH C 14 371 47 HOH HOH . K 4 HOH C 15 372 48 HOH HOH . K 4 HOH C 16 373 49 HOH HOH . K 4 HOH C 17 374 51 HOH HOH . K 4 HOH C 18 375 64 HOH HOH . K 4 HOH C 19 376 65 HOH HOH . K 4 HOH C 20 377 70 HOH HOH . K 4 HOH C 21 378 71 HOH HOH . K 4 HOH C 22 379 74 HOH HOH . K 4 HOH C 23 380 77 HOH HOH . K 4 HOH C 24 381 78 HOH HOH . K 4 HOH C 25 382 84 HOH HOH . K 4 HOH C 26 383 85 HOH HOH . K 4 HOH C 27 384 90 HOH HOH . K 4 HOH C 28 385 93 HOH HOH . K 4 HOH C 29 386 100 HOH HOH . K 4 HOH C 30 387 101 HOH HOH . K 4 HOH C 31 388 102 HOH HOH . K 4 HOH C 32 389 109 HOH HOH . K 4 HOH C 33 390 111 HOH HOH . K 4 HOH C 34 391 114 HOH HOH . K 4 HOH C 35 392 116 HOH HOH . K 4 HOH C 36 393 117 HOH HOH . K 4 HOH C 37 394 120 HOH HOH . K 4 HOH C 38 395 124 HOH HOH . K 4 HOH C 39 396 125 HOH HOH . K 4 HOH C 40 397 134 HOH HOH . K 4 HOH C 41 398 138 HOH HOH . K 4 HOH C 42 399 145 HOH HOH . K 4 HOH C 43 400 148 HOH HOH . K 4 HOH C 44 401 159 HOH HOH . K 4 HOH C 45 402 161 HOH HOH . L 4 HOH D 1 359 1 HOH HOH . L 4 HOH D 2 360 5 HOH HOH . L 4 HOH D 3 361 10 HOH HOH . L 4 HOH D 4 362 14 HOH HOH . L 4 HOH D 5 363 20 HOH HOH . L 4 HOH D 6 364 22 HOH HOH . L 4 HOH D 7 365 23 HOH HOH . L 4 HOH D 8 366 24 HOH HOH . L 4 HOH D 9 367 28 HOH HOH . L 4 HOH D 10 368 29 HOH HOH . L 4 HOH D 11 369 30 HOH HOH . L 4 HOH D 12 370 31 HOH HOH . L 4 HOH D 13 371 34 HOH HOH . L 4 HOH D 14 372 36 HOH HOH . L 4 HOH D 15 373 43 HOH HOH . L 4 HOH D 16 374 45 HOH HOH . L 4 HOH D 17 375 53 HOH HOH . L 4 HOH D 18 376 54 HOH HOH . L 4 HOH D 19 377 60 HOH HOH . L 4 HOH D 20 378 68 HOH HOH . L 4 HOH D 21 379 73 HOH HOH . L 4 HOH D 22 380 79 HOH HOH . L 4 HOH D 23 381 80 HOH HOH . L 4 HOH D 24 382 81 HOH HOH . L 4 HOH D 25 383 83 HOH HOH . L 4 HOH D 26 384 87 HOH HOH . L 4 HOH D 27 385 89 HOH HOH . L 4 HOH D 28 386 91 HOH HOH . L 4 HOH D 29 387 94 HOH HOH . L 4 HOH D 30 388 95 HOH HOH . L 4 HOH D 31 389 97 HOH HOH . L 4 HOH D 32 390 99 HOH HOH . L 4 HOH D 33 391 103 HOH HOH . L 4 HOH D 34 392 106 HOH HOH . L 4 HOH D 35 393 110 HOH HOH . L 4 HOH D 36 394 113 HOH HOH . L 4 HOH D 37 395 115 HOH HOH . L 4 HOH D 38 396 119 HOH HOH . L 4 HOH D 39 397 121 HOH HOH . L 4 HOH D 40 398 123 HOH HOH . L 4 HOH D 41 399 127 HOH HOH . L 4 HOH D 42 400 129 HOH HOH . L 4 HOH D 43 401 132 HOH HOH . L 4 HOH D 44 402 135 HOH HOH . L 4 HOH D 45 403 139 HOH HOH . L 4 HOH D 46 404 141 HOH HOH . L 4 HOH D 47 405 146 HOH HOH . L 4 HOH D 48 406 149 HOH HOH . L 4 HOH D 49 407 151 HOH HOH . L 4 HOH D 50 408 152 HOH HOH . L 4 HOH D 51 409 153 HOH HOH . L 4 HOH D 52 410 155 HOH HOH . L 4 HOH D 53 411 157 HOH HOH . L 4 HOH D 54 412 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTB . . . G 2 25.443 -4.144 9.504 1 23.81 ? N1 GTB 357 C 1 HETATM 2 C CA1 GTB . . . G 2 25.732 -4.422 10.916 1 26.13 ? CA1 GTB 357 C 1 HETATM 3 C C1 GTB . . . G 2 24.628 -3.582 11.665 1 25.42 ? C1 GTB 357 C 1 HETATM 4 O O11 GTB . . . G 2 24.178 -2.56 11.145 1 23.49 ? O11 GTB 357 C 1 HETATM 5 O O12 GTB . . . G 2 24.237 -3.984 12.771 1 26.09 ? O12 GTB 357 C 1 HETATM 6 C CB1 GTB . . . G 2 27.19 -3.981 11.246 1 26.89 ? CB1 GTB 357 C 1 HETATM 7 C CG1 GTB . . . G 2 27.55 -4.218 12.708 1 31.19 ? CG1 GTB 357 C 1 HETATM 8 C CD1 GTB . . . G 2 28.994 -3.816 12.994 1 31.88 ? CD1 GTB 357 C 1 HETATM 9 O OE1 GTB . . . G 2 29.74 -3.374 12.11 1 37.46 ? OE1 GTB 357 C 1 HETATM 10 N N2 GTB . . . G 2 29.358 -3.979 14.256 1 32.05 ? N2 GTB 357 C 1 HETATM 11 C CA2 GTB . . . G 2 30.722 -3.66 14.704 1 33.75 ? CA2 GTB 357 C 1 HETATM 12 C C2 GTB . . . G 2 31.214 -4.835 15.552 1 33.04 ? C2 GTB 357 C 1 HETATM 13 O O2 GTB . . . G 2 30.394 -5.572 16.137 1 28.51 ? O2 GTB 357 C 1 HETATM 14 C CB2 GTB . . . G 2 30.755 -2.385 15.583 1 37.37 ? CB2 GTB 357 C 1 HETATM 15 S SG2 GTB . . . G 2 30.26 -0.851 14.741 1 40.65 ? SG2 GTB 357 C 1 HETATM 16 N N3 GTB . . . G 2 32.547 -5.024 15.626 1 36.51 ? N3 GTB 357 C 1 HETATM 17 C CA3 GTB . . . G 2 33.099 -6.126 16.418 1 42.69 ? CA3 GTB 357 C 1 HETATM 18 C C3 GTB . . . G 2 34.302 -6.764 15.767 1 45.89 ? C3 GTB 357 C 1 HETATM 19 O O31 GTB . . . G 2 35.381 -6.73 16.394 1 48.06 ? O31 GTB 357 C 1 HETATM 20 O O32 GTB . . . G 2 34.151 -7.3 14.649 1 46.54 ? O32 GTB 357 C 1 HETATM 21 C C' GTB . . . G 2 31.853 -0.563 13.882 1 46.96 ? C' GTB 357 C 1 HETATM 22 C C1' GTB . . . G 2 32.485 0.753 14.311 1 50.59 ? C1' GTB 357 C 1 HETATM 23 C C2' GTB . . . G 2 32.455 1.866 13.446 1 52.17 ? C2' GTB 357 C 1 HETATM 24 C C3' GTB . . . G 2 33.027 3.094 13.848 1 55.69 ? C3' GTB 357 C 1 HETATM 25 C C4' GTB . . . G 2 33.653 3.253 15.138 1 58.12 ? C4' GTB 357 C 1 HETATM 26 N N41 GTB . . . G 2 34.253 4.605 15.536 1 62.27 ? N41 GTB 357 C 1 HETATM 27 O O41 GTB . . . G 2 34.214 5.573 14.784 1 62.88 ? O41 GTB 357 C 1 HETATM 28 O O42 GTB . . . G 2 34.783 4.736 16.629 1 64.9 ? O42 GTB 357 C 1 HETATM 29 C C5' GTB . . . G 2 33.709 2.141 16.043 1 56.12 ? C5' GTB 357 C 1 HETATM 30 C C6' GTB . . . G 2 33.152 0.896 15.689 1 53.14 ? C6' GTB 357 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #