data_1K0J # _model_server_result.job_id -J6IxfXdDxCFSxRYoWMhRA _model_server_result.datetime_utc '2024-11-08 06:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":395}' # _entry.id 1K0J # _exptl.entry_id 1K0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K0J _cell.length_a 71.845 _cell.length_b 139.146 _cell.length_c 91.637 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_757 -x+2,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 143.69 0 229.0925 3 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 139.146 183.274 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1K0J _atom_sites.fract_transf_matrix[1][1] 0.013919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 700 700 SO4 SO4 . C 2 SO4 A 1 701 701 SO4 SO4 . D 2 SO4 A 1 702 702 SO4 SO4 . E 2 SO4 A 1 703 703 SO4 SO4 . F 2 SO4 A 1 704 704 SO4 SO4 . G 3 FAD A 1 395 395 FAD FAD . H 4 NDP A 1 398 398 NDP NDP . I 5 HOH A 1 400 400 HOH HOH . I 5 HOH A 2 401 401 HOH HOH . I 5 HOH A 3 402 402 HOH HOH . I 5 HOH A 4 403 403 HOH HOH . I 5 HOH A 5 404 404 HOH HOH . I 5 HOH A 6 405 405 HOH HOH . I 5 HOH A 7 406 406 HOH HOH . I 5 HOH A 8 407 407 HOH HOH . I 5 HOH A 9 408 408 HOH HOH . I 5 HOH A 10 409 409 HOH HOH . I 5 HOH A 11 410 410 HOH HOH . I 5 HOH A 12 411 411 HOH HOH . I 5 HOH A 13 412 412 HOH HOH . I 5 HOH A 14 413 413 HOH HOH . I 5 HOH A 15 414 414 HOH HOH . I 5 HOH A 16 415 415 HOH HOH . I 5 HOH A 17 416 416 HOH HOH . I 5 HOH A 18 417 417 HOH HOH . I 5 HOH A 19 418 418 HOH HOH . I 5 HOH A 20 419 419 HOH HOH . I 5 HOH A 21 420 420 HOH HOH . I 5 HOH A 22 421 421 HOH HOH . I 5 HOH A 23 422 422 HOH HOH . I 5 HOH A 24 423 423 HOH HOH . I 5 HOH A 25 424 424 HOH HOH . I 5 HOH A 26 425 425 HOH HOH . I 5 HOH A 27 426 426 HOH HOH . I 5 HOH A 28 427 427 HOH HOH . I 5 HOH A 29 428 428 HOH HOH . I 5 HOH A 30 429 429 HOH HOH . I 5 HOH A 31 430 430 HOH HOH . I 5 HOH A 32 431 431 HOH HOH . I 5 HOH A 33 432 432 HOH HOH . I 5 HOH A 34 433 433 HOH HOH . I 5 HOH A 35 434 434 HOH HOH . I 5 HOH A 36 435 435 HOH HOH . I 5 HOH A 37 436 436 HOH HOH . I 5 HOH A 38 437 437 HOH HOH . I 5 HOH A 39 438 438 HOH HOH . I 5 HOH A 40 439 439 HOH HOH . I 5 HOH A 41 440 440 HOH HOH . I 5 HOH A 42 441 441 HOH HOH . I 5 HOH A 43 442 442 HOH HOH . I 5 HOH A 44 443 443 HOH HOH . I 5 HOH A 45 444 444 HOH HOH . I 5 HOH A 46 445 445 HOH HOH . I 5 HOH A 47 446 446 HOH HOH . I 5 HOH A 48 447 447 HOH HOH . I 5 HOH A 49 448 448 HOH HOH . I 5 HOH A 50 449 449 HOH HOH . I 5 HOH A 51 450 450 HOH HOH . I 5 HOH A 52 451 451 HOH HOH . I 5 HOH A 53 452 452 HOH HOH . I 5 HOH A 54 453 453 HOH HOH . I 5 HOH A 55 454 454 HOH HOH . I 5 HOH A 56 455 455 HOH HOH . I 5 HOH A 57 456 456 HOH HOH . I 5 HOH A 58 457 457 HOH HOH . I 5 HOH A 59 458 458 HOH HOH . I 5 HOH A 60 459 459 HOH HOH . I 5 HOH A 61 460 460 HOH HOH . I 5 HOH A 62 461 461 HOH HOH . I 5 HOH A 63 462 462 HOH HOH . I 5 HOH A 64 463 463 HOH HOH . I 5 HOH A 65 464 464 HOH HOH . I 5 HOH A 66 465 465 HOH HOH . I 5 HOH A 67 466 466 HOH HOH . I 5 HOH A 68 467 467 HOH HOH . I 5 HOH A 69 468 468 HOH HOH . I 5 HOH A 70 469 469 HOH HOH . I 5 HOH A 71 470 470 HOH HOH . I 5 HOH A 72 471 471 HOH HOH . I 5 HOH A 73 472 472 HOH HOH . I 5 HOH A 74 473 473 HOH HOH . I 5 HOH A 75 474 474 HOH HOH . I 5 HOH A 76 475 475 HOH HOH . I 5 HOH A 77 476 476 HOH HOH . I 5 HOH A 78 477 477 HOH HOH . I 5 HOH A 79 478 478 HOH HOH . I 5 HOH A 80 479 479 HOH HOH . I 5 HOH A 81 480 480 HOH HOH . I 5 HOH A 82 481 481 HOH HOH . I 5 HOH A 83 482 482 HOH HOH . I 5 HOH A 84 483 483 HOH HOH . I 5 HOH A 85 484 484 HOH HOH . I 5 HOH A 86 485 485 HOH HOH . I 5 HOH A 87 486 486 HOH HOH . I 5 HOH A 88 487 487 HOH HOH . I 5 HOH A 89 488 488 HOH HOH . I 5 HOH A 90 489 489 HOH HOH . I 5 HOH A 91 490 490 HOH HOH . I 5 HOH A 92 491 491 HOH HOH . I 5 HOH A 93 492 492 HOH HOH . I 5 HOH A 94 493 493 HOH HOH . I 5 HOH A 95 494 494 HOH HOH . I 5 HOH A 96 495 495 HOH HOH . I 5 HOH A 97 496 496 HOH HOH . I 5 HOH A 98 498 498 HOH HOH . I 5 HOH A 99 499 499 HOH HOH . I 5 HOH A 100 500 500 HOH HOH . I 5 HOH A 101 501 501 HOH HOH . I 5 HOH A 102 502 502 HOH HOH . I 5 HOH A 103 503 503 HOH HOH . I 5 HOH A 104 504 504 HOH HOH . I 5 HOH A 105 505 505 HOH HOH . I 5 HOH A 106 506 506 HOH HOH . I 5 HOH A 107 507 507 HOH HOH . I 5 HOH A 108 508 508 HOH HOH . I 5 HOH A 109 509 509 HOH HOH . I 5 HOH A 110 510 510 HOH HOH . I 5 HOH A 111 511 511 HOH HOH . I 5 HOH A 112 512 512 HOH HOH . I 5 HOH A 113 513 513 HOH HOH . I 5 HOH A 114 514 514 HOH HOH . I 5 HOH A 115 515 515 HOH HOH . I 5 HOH A 116 516 516 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 3 59.067 92.98 109.779 1 32.57 ? PA FAD 395 A 1 HETATM 2 O O1A FAD . . . G 3 58.138 93.711 108.92 1 31.34 ? O1A FAD 395 A 1 HETATM 3 O O2A FAD . . . G 3 60.431 92.731 109.28 1 33.39 ? O2A FAD 395 A 1 HETATM 4 O O5B FAD . . . G 3 59.091 93.687 111.146 1 31.68 ? O5B FAD 395 A 1 HETATM 5 C C5B FAD . . . G 3 59.917 93.426 112.254 1 33.84 ? C5B FAD 395 A 1 HETATM 6 C C4B FAD . . . G 3 60.028 94.72 113.096 1 35.9 ? C4B FAD 395 A 1 HETATM 7 O O4B FAD . . . G 3 60.744 94.537 114.335 1 38.4 ? O4B FAD 395 A 1 HETATM 8 C C3B FAD . . . G 3 60.771 95.813 112.377 1 36.37 ? C3B FAD 395 A 1 HETATM 9 O O3B FAD . . . G 3 60.04 96.997 112.572 1 33.43 ? O3B FAD 395 A 1 HETATM 10 C C2B FAD . . . G 3 62.154 95.725 112.988 1 36.97 ? C2B FAD 395 A 1 HETATM 11 O O2B FAD . . . G 3 62.986 96.87 112.905 1 39.35 ? O2B FAD 395 A 1 HETATM 12 C C1B FAD . . . G 3 61.9 95.349 114.4 1 37.96 ? C1B FAD 395 A 1 HETATM 13 N N9A FAD . . . G 3 63.003 94.638 115.104 1 40.58 ? N9A FAD 395 A 1 HETATM 14 C C8A FAD . . . G 3 64.111 93.98 114.589 1 40.81 ? C8A FAD 395 A 1 HETATM 15 N N7A FAD . . . G 3 65.043 93.763 115.45 1 42.18 ? N7A FAD 395 A 1 HETATM 16 C C5A FAD . . . G 3 64.549 94.304 116.623 1 40.84 ? C5A FAD 395 A 1 HETATM 17 C C6A FAD . . . G 3 65.087 94.363 117.912 1 40.21 ? C6A FAD 395 A 1 HETATM 18 N N6A FAD . . . G 3 66.315 93.948 118.12 1 39.57 ? N6A FAD 395 A 1 HETATM 19 N N1A FAD . . . G 3 64.368 94.927 118.896 1 39.33 ? N1A FAD 395 A 1 HETATM 20 C C2A FAD . . . G 3 63.173 95.412 118.569 1 41.06 ? C2A FAD 395 A 1 HETATM 21 N N3A FAD . . . G 3 62.548 95.43 117.381 1 40.75 ? N3A FAD 395 A 1 HETATM 22 C C4A FAD . . . G 3 63.311 94.842 116.432 1 40.43 ? C4A FAD 395 A 1 HETATM 23 N N1 FAD . . . G 3 54.141 89.124 101.776 1 44.21 ? N1 FAD 395 A 1 HETATM 24 C C2 FAD . . . G 3 52.839 88.963 101.363 1 48.25 ? C2 FAD 395 A 1 HETATM 25 O O2 FAD . . . G 3 52.026 88.227 101.933 1 50.91 ? O2 FAD 395 A 1 HETATM 26 N N3 FAD . . . G 3 52.459 89.575 100.192 1 48.2 ? N3 FAD 395 A 1 HETATM 27 C C4 FAD . . . G 3 53.256 90.32 99.368 1 46.48 ? C4 FAD 395 A 1 HETATM 28 O O4 FAD . . . G 3 52.715 90.75 98.345 1 50.63 ? O4 FAD 395 A 1 HETATM 29 C C4X FAD . . . G 3 54.614 90.445 99.813 1 44.17 ? C4X FAD 395 A 1 HETATM 30 N N5 FAD . . . G 3 55.462 90.989 98.88 1 43.69 ? N5 FAD 395 A 1 HETATM 31 C C5X FAD . . . G 3 56.809 90.872 99.143 1 43.73 ? C5X FAD 395 A 1 HETATM 32 C C6 FAD . . . G 3 57.668 91.217 98.031 1 44.01 ? C6 FAD 395 A 1 HETATM 33 C C7 FAD . . . G 3 59.047 91.024 98.071 1 43.58 ? C7 FAD 395 A 1 HETATM 34 C C7M FAD . . . G 3 59.797 91.466 96.846 1 42.01 ? C7M FAD 395 A 1 HETATM 35 C C8 FAD . . . G 3 59.667 90.438 99.312 1 45.6 ? C8 FAD 395 A 1 HETATM 36 C C8M FAD . . . G 3 61.202 90.171 99.516 1 45.47 ? C8M FAD 395 A 1 HETATM 37 C C9 FAD . . . G 3 58.822 90.108 100.399 1 44.58 ? C9 FAD 395 A 1 HETATM 38 C C9A FAD . . . G 3 57.389 90.316 100.339 1 43.16 ? C9A FAD 395 A 1 HETATM 39 N N10 FAD . . . G 3 56.407 89.957 101.357 1 42.5 ? N10 FAD 395 A 1 HETATM 40 C C10 FAD . . . G 3 54.982 89.838 101.016 1 42.76 ? C10 FAD 395 A 1 HETATM 41 C C1' FAD . . . G 3 56.876 89.62 102.702 1 42.92 ? C1' FAD 395 A 1 HETATM 42 C C2' FAD . . . G 3 56.689 90.622 103.863 1 40.88 ? C2' FAD 395 A 1 HETATM 43 O O2' FAD . . . G 3 57.371 91.816 103.49 1 42.98 ? O2' FAD 395 A 1 HETATM 44 C C3' FAD . . . G 3 57.227 90.131 105.2 1 39.33 ? C3' FAD 395 A 1 HETATM 45 O O3' FAD . . . G 3 56.993 88.719 105.357 1 38.81 ? O3' FAD 395 A 1 HETATM 46 C C4' FAD . . . G 3 56.684 90.964 106.395 1 39.25 ? C4' FAD 395 A 1 HETATM 47 O O4' FAD . . . G 3 57.286 92.246 106.481 1 40.18 ? O4' FAD 395 A 1 HETATM 48 C C5' FAD . . . G 3 57.018 90.357 107.721 1 38.11 ? C5' FAD 395 A 1 HETATM 49 O O5' FAD . . . G 3 56.49 91.124 108.77 1 36.71 ? O5' FAD 395 A 1 HETATM 50 P P FAD . . . G 3 56.99 90.988 110.263 1 35.44 ? P FAD 395 A 1 HETATM 51 O O1P FAD . . . G 3 56.197 91.901 111.122 1 35.53 ? O1P FAD 395 A 1 HETATM 52 O O2P FAD . . . G 3 57.025 89.538 110.562 1 34.32 ? O2P FAD 395 A 1 HETATM 53 O O3P FAD . . . G 3 58.502 91.549 110.216 1 34.72 ? O3P FAD 395 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #