data_1K0J # _model_server_result.job_id A-6RA-JuIvJdEYnlBeANjQ _model_server_result.datetime_utc '2024-11-08 06:58:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":398}' # _entry.id 1K0J # _exptl.entry_id 1K0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K0J _cell.length_a 71.845 _cell.length_b 139.146 _cell.length_c 91.637 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_757 -x+2,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 143.69 0 229.0925 3 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 139.146 183.274 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 328 n n PA O2A NDP sing 329 n n PA O5B NDP sing 330 n n PA O3 NDP sing 331 n n O2A HOA2 NDP sing 332 n n O5B C5B NDP sing 333 n n C5B C4B NDP sing 334 n n C5B H51A NDP sing 335 n n C5B H52A NDP sing 336 n n C4B O4B NDP sing 337 n n C4B C3B NDP sing 338 n n C4B H4B NDP sing 339 n n O4B C1B NDP sing 340 n n C3B O3B NDP sing 341 n n C3B C2B NDP sing 342 n n C3B H3B NDP sing 343 n n O3B HO3A NDP sing 344 n n C2B O2B NDP sing 345 n n C2B C1B NDP sing 346 n n C2B H2B NDP sing 347 n n O2B P2B NDP sing 348 n n C1B N9A NDP sing 349 n n C1B H1B NDP sing 350 n n N9A C8A NDP sing 351 n y N9A C4A NDP sing 352 n y C8A N7A NDP doub 353 n y C8A H8A NDP sing 354 n n N7A C5A NDP sing 355 n y C5A C6A NDP sing 356 n y C5A C4A NDP doub 357 n y C6A N6A NDP sing 358 n n C6A N1A NDP doub 359 n y N6A H61A NDP sing 360 n n N6A H62A NDP sing 361 n n N1A C2A NDP sing 362 n y C2A N3A NDP doub 363 n y C2A H2A NDP sing 364 n n N3A C4A NDP sing 365 n y O3 PN NDP sing 366 n n PN O1N NDP doub 367 n n PN O2N NDP sing 368 n n PN O5D NDP sing 369 n n O2N H21N NDP sing 370 n n O5D C5D NDP sing 371 n n C5D C4D NDP sing 372 n n C5D H51N NDP sing 373 n n C5D H52N NDP sing 374 n n C4D O4D NDP sing 375 n n C4D C3D NDP sing 376 n n C4D H4D NDP sing 377 n n O4D C1D NDP sing 378 n n C3D O3D NDP sing 379 n n C3D C2D NDP sing 380 n n C3D H3D NDP sing 381 n n O3D HO3N NDP sing 382 n n C2D O2D NDP sing 383 n n C2D C1D NDP sing 384 n n C2D H2D NDP sing 385 n n O2D HO2N NDP sing 386 n n C1D N1N NDP sing 387 n n C1D H1D NDP sing 388 n n N1N C2N NDP sing 389 n n N1N C6N NDP sing 390 n n C2N C3N NDP doub 391 n n C2N H2N NDP sing 392 n n C3N C7N NDP sing 393 n n C3N C4N NDP sing 394 n n C7N O7N NDP doub 395 n n C7N N7N NDP sing 396 n n N7N H71N NDP sing 397 n n N7N H72N NDP sing 398 n n C4N C5N NDP sing 399 n n C4N H41N NDP sing 400 n n C4N H42N NDP sing 401 n n C5N C6N NDP doub 402 n n C5N H5N NDP sing 403 n n C6N H6N NDP sing 404 n n P2B O1X NDP doub 405 n n P2B O2X NDP sing 406 n n P2B O3X NDP sing 407 n n O2X HOP2 NDP sing 408 n n O3X HOP3 NDP sing 409 n n # _atom_sites.entry_id 1K0J _atom_sites.fract_transf_matrix[1][1] 0.013919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 700 700 SO4 SO4 . C 2 SO4 A 1 701 701 SO4 SO4 . D 2 SO4 A 1 702 702 SO4 SO4 . E 2 SO4 A 1 703 703 SO4 SO4 . F 2 SO4 A 1 704 704 SO4 SO4 . G 3 FAD A 1 395 395 FAD FAD . H 4 NDP A 1 398 398 NDP NDP . I 5 HOH A 1 400 400 HOH HOH . I 5 HOH A 2 401 401 HOH HOH . I 5 HOH A 3 402 402 HOH HOH . I 5 HOH A 4 403 403 HOH HOH . I 5 HOH A 5 404 404 HOH HOH . I 5 HOH A 6 405 405 HOH HOH . I 5 HOH A 7 406 406 HOH HOH . I 5 HOH A 8 407 407 HOH HOH . I 5 HOH A 9 408 408 HOH HOH . I 5 HOH A 10 409 409 HOH HOH . I 5 HOH A 11 410 410 HOH HOH . I 5 HOH A 12 411 411 HOH HOH . I 5 HOH A 13 412 412 HOH HOH . I 5 HOH A 14 413 413 HOH HOH . I 5 HOH A 15 414 414 HOH HOH . I 5 HOH A 16 415 415 HOH HOH . I 5 HOH A 17 416 416 HOH HOH . I 5 HOH A 18 417 417 HOH HOH . I 5 HOH A 19 418 418 HOH HOH . I 5 HOH A 20 419 419 HOH HOH . I 5 HOH A 21 420 420 HOH HOH . I 5 HOH A 22 421 421 HOH HOH . I 5 HOH A 23 422 422 HOH HOH . I 5 HOH A 24 423 423 HOH HOH . I 5 HOH A 25 424 424 HOH HOH . I 5 HOH A 26 425 425 HOH HOH . I 5 HOH A 27 426 426 HOH HOH . I 5 HOH A 28 427 427 HOH HOH . I 5 HOH A 29 428 428 HOH HOH . I 5 HOH A 30 429 429 HOH HOH . I 5 HOH A 31 430 430 HOH HOH . I 5 HOH A 32 431 431 HOH HOH . I 5 HOH A 33 432 432 HOH HOH . I 5 HOH A 34 433 433 HOH HOH . I 5 HOH A 35 434 434 HOH HOH . I 5 HOH A 36 435 435 HOH HOH . I 5 HOH A 37 436 436 HOH HOH . I 5 HOH A 38 437 437 HOH HOH . I 5 HOH A 39 438 438 HOH HOH . I 5 HOH A 40 439 439 HOH HOH . I 5 HOH A 41 440 440 HOH HOH . I 5 HOH A 42 441 441 HOH HOH . I 5 HOH A 43 442 442 HOH HOH . I 5 HOH A 44 443 443 HOH HOH . I 5 HOH A 45 444 444 HOH HOH . I 5 HOH A 46 445 445 HOH HOH . I 5 HOH A 47 446 446 HOH HOH . I 5 HOH A 48 447 447 HOH HOH . I 5 HOH A 49 448 448 HOH HOH . I 5 HOH A 50 449 449 HOH HOH . I 5 HOH A 51 450 450 HOH HOH . I 5 HOH A 52 451 451 HOH HOH . I 5 HOH A 53 452 452 HOH HOH . I 5 HOH A 54 453 453 HOH HOH . I 5 HOH A 55 454 454 HOH HOH . I 5 HOH A 56 455 455 HOH HOH . I 5 HOH A 57 456 456 HOH HOH . I 5 HOH A 58 457 457 HOH HOH . I 5 HOH A 59 458 458 HOH HOH . I 5 HOH A 60 459 459 HOH HOH . I 5 HOH A 61 460 460 HOH HOH . I 5 HOH A 62 461 461 HOH HOH . I 5 HOH A 63 462 462 HOH HOH . I 5 HOH A 64 463 463 HOH HOH . I 5 HOH A 65 464 464 HOH HOH . I 5 HOH A 66 465 465 HOH HOH . I 5 HOH A 67 466 466 HOH HOH . I 5 HOH A 68 467 467 HOH HOH . I 5 HOH A 69 468 468 HOH HOH . I 5 HOH A 70 469 469 HOH HOH . I 5 HOH A 71 470 470 HOH HOH . I 5 HOH A 72 471 471 HOH HOH . I 5 HOH A 73 472 472 HOH HOH . I 5 HOH A 74 473 473 HOH HOH . I 5 HOH A 75 474 474 HOH HOH . I 5 HOH A 76 475 475 HOH HOH . I 5 HOH A 77 476 476 HOH HOH . I 5 HOH A 78 477 477 HOH HOH . I 5 HOH A 79 478 478 HOH HOH . I 5 HOH A 80 479 479 HOH HOH . I 5 HOH A 81 480 480 HOH HOH . I 5 HOH A 82 481 481 HOH HOH . I 5 HOH A 83 482 482 HOH HOH . I 5 HOH A 84 483 483 HOH HOH . I 5 HOH A 85 484 484 HOH HOH . I 5 HOH A 86 485 485 HOH HOH . I 5 HOH A 87 486 486 HOH HOH . I 5 HOH A 88 487 487 HOH HOH . I 5 HOH A 89 488 488 HOH HOH . I 5 HOH A 90 489 489 HOH HOH . I 5 HOH A 91 490 490 HOH HOH . I 5 HOH A 92 491 491 HOH HOH . I 5 HOH A 93 492 492 HOH HOH . I 5 HOH A 94 493 493 HOH HOH . I 5 HOH A 95 494 494 HOH HOH . I 5 HOH A 96 495 495 HOH HOH . I 5 HOH A 97 496 496 HOH HOH . I 5 HOH A 98 498 498 HOH HOH . I 5 HOH A 99 499 499 HOH HOH . I 5 HOH A 100 500 500 HOH HOH . I 5 HOH A 101 501 501 HOH HOH . I 5 HOH A 102 502 502 HOH HOH . I 5 HOH A 103 503 503 HOH HOH . I 5 HOH A 104 504 504 HOH HOH . I 5 HOH A 105 505 505 HOH HOH . I 5 HOH A 106 506 506 HOH HOH . I 5 HOH A 107 507 507 HOH HOH . I 5 HOH A 108 508 508 HOH HOH . I 5 HOH A 109 509 509 HOH HOH . I 5 HOH A 110 510 510 HOH HOH . I 5 HOH A 111 511 511 HOH HOH . I 5 HOH A 112 512 512 HOH HOH . I 5 HOH A 113 513 513 HOH HOH . I 5 HOH A 114 514 514 HOH HOH . I 5 HOH A 115 515 515 HOH HOH . I 5 HOH A 116 516 516 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 4 69.191 91.824 102.751 1 88.15 ? PA NDP 398 A 1 HETATM 2 O O1A NDP . . . H 4 70.337 92.447 102.097 1 89.46 ? O1A NDP 398 A 1 HETATM 3 O O2A NDP . . . H 4 69.29 92.218 104.183 1 88.44 ? O2A NDP 398 A 1 HETATM 4 O O5B NDP . . . H 4 67.873 92.316 101.902 1 87.34 ? O5B NDP 398 A 1 HETATM 5 C C5B NDP . . . H 4 67.5 93.692 101.827 1 86.02 ? C5B NDP 398 A 1 HETATM 6 C C4B NDP . . . H 4 66.889 93.965 100.448 1 84.57 ? C4B NDP 398 A 1 HETATM 7 O O4B NDP . . . H 4 65.546 93.141 100.547 1 84 ? O4B NDP 398 A 1 HETATM 8 C C3B NDP . . . H 4 66.296 95.32 100.186 1 84.06 ? C3B NDP 398 A 1 HETATM 9 O O3B NDP . . . H 4 66.214 95.602 98.738 1 82.67 ? O3B NDP 398 A 1 HETATM 10 C C2B NDP . . . H 4 65.086 95.299 100.905 1 83.86 ? C2B NDP 398 A 1 HETATM 11 O O2B NDP . . . H 4 64.306 96.488 100.821 1 85 ? O2B NDP 398 A 1 HETATM 12 C C1B NDP . . . H 4 64.519 94.098 100.305 1 83.04 ? C1B NDP 398 A 1 HETATM 13 N N9A NDP . . . H 4 63.198 93.718 100.918 1 81.09 ? N9A NDP 398 A 1 HETATM 14 C C8A NDP . . . H 4 62.89 92.993 102.054 1 80.65 ? C8A NDP 398 A 1 HETATM 15 N N7A NDP . . . H 4 61.573 92.856 102.288 1 79.64 ? N7A NDP 398 A 1 HETATM 16 C C5A NDP . . . H 4 60.995 93.516 101.269 1 79.96 ? C5A NDP 398 A 1 HETATM 17 C C6A NDP . . . H 4 59.653 93.729 100.957 1 79.33 ? C6A NDP 398 A 1 HETATM 18 N N6A NDP . . . H 4 58.68 93.268 101.688 1 80.03 ? N6A NDP 398 A 1 HETATM 19 N N1A NDP . . . H 4 59.372 94.457 99.825 1 79.01 ? N1A NDP 398 A 1 HETATM 20 C C2A NDP . . . H 4 60.355 94.961 99.024 1 80.13 ? C2A NDP 398 A 1 HETATM 21 N N3A NDP . . . H 4 61.67 94.798 99.257 1 80.24 ? N3A NDP 398 A 1 HETATM 22 C C4A NDP . . . H 4 61.935 94.061 100.402 1 80.14 ? C4A NDP 398 A 1 HETATM 23 O O3 NDP . . . H 4 69.119 90.29 102.483 1 87.89 ? O3 NDP 398 A 1 HETATM 24 P PN NDP . . . H 4 68.138 89.259 103.327 1 88.86 ? PN NDP 398 A 1 HETATM 25 O O1N NDP . . . H 4 66.986 88.969 102.504 1 89.5 ? O1N NDP 398 A 1 HETATM 26 O O2N NDP . . . H 4 67.785 90.031 104.562 1 88.58 ? O2N NDP 398 A 1 HETATM 27 O O5D NDP . . . H 4 69.041 87.97 103.718 1 89.29 ? O5D NDP 398 A 1 HETATM 28 C C5D NDP . . . H 4 69.653 88.035 104.967 1 88.21 ? C5D NDP 398 A 1 HETATM 29 C C4D NDP . . . H 4 71.141 87.976 104.652 1 87.08 ? C4D NDP 398 A 1 HETATM 30 O O4D NDP . . . H 4 71.817 88.055 105.985 1 87.49 ? O4D NDP 398 A 1 HETATM 31 C C3D NDP . . . H 4 71.792 86.637 104.199 1 87.09 ? C3D NDP 398 A 1 HETATM 32 O O3D NDP . . . H 4 73.207 86.965 103.934 1 86.95 ? O3D NDP 398 A 1 HETATM 33 C C2D NDP . . . H 4 71.745 85.705 105.369 1 87.22 ? C2D NDP 398 A 1 HETATM 34 O O2D NDP . . . H 4 72.644 84.538 105.188 1 87.24 ? O2D NDP 398 A 1 HETATM 35 C C1D NDP . . . H 4 72.187 86.723 106.482 1 87.56 ? C1D NDP 398 A 1 HETATM 36 N N1N NDP . . . H 4 71.575 86.695 107.879 1 88.37 ? N1N NDP 398 A 1 HETATM 37 C C2N NDP . . . H 4 71.977 87.64 108.943 1 88.49 ? C2N NDP 398 A 1 HETATM 38 C C3N NDP . . . H 4 71.295 87.478 110.231 1 88.64 ? C3N NDP 398 A 1 HETATM 39 C C7N NDP . . . H 4 71.509 88.297 111.481 1 88.24 ? C7N NDP 398 A 1 HETATM 40 O O7N NDP . . . H 4 70.854 88.041 112.506 1 88.38 ? O7N NDP 398 A 1 HETATM 41 N N7N NDP . . . H 4 72.368 89.266 111.514 1 88.71 ? N7N NDP 398 A 1 HETATM 42 C C4N NDP . . . H 4 70.305 86.445 110.38 1 88.77 ? C4N NDP 398 A 1 HETATM 43 C C5N NDP . . . H 4 69.986 85.588 109.304 1 89.3 ? C5N NDP 398 A 1 HETATM 44 C C6N NDP . . . H 4 70.592 85.712 108.12 1 88.98 ? C6N NDP 398 A 1 HETATM 45 P P2B NDP . . . H 4 64.589 97.771 101.819 1 84.99 ? P2B NDP 398 A 1 HETATM 46 O O1X NDP . . . H 4 65.967 98.311 101.725 1 86.36 ? O1X NDP 398 A 1 HETATM 47 O O2X NDP . . . H 4 63.576 98.665 101.327 1 85.39 ? O2X NDP 398 A 1 HETATM 48 O O3X NDP . . . H 4 64.282 97.204 103.163 1 83.65 ? O3X NDP 398 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #