data_1K1D # _model_server_result.job_id vCcXWHfZZp7VCSsEMyzEPQ _model_server_result.datetime_utc '2024-11-30 06:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 1K1D # _exptl.entry_id 1K1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.27 _cell.angle_gamma 90 _cell.entry_id 1K1D _cell.length_a 214.449 _cell.length_b 182.89 _cell.length_c 156.131 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,U,V,W,X 1 1 C,D,E,F,M,N,O,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 T ZN ZN . F ZN 502 1_555 F OD1 ASP 315 F ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? covale ? covale1 A C LEU 149 A LEU 149 1_555 A N KCX 150 A KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 A C KCX 150 A KCX 150 1_555 A N VAL 151 A VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? metalc ? metalc2 I ZN ZN . A ZN 501 1_555 A NE2 HIS 239 A HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc3 I ZN ZN . A ZN 501 1_555 A OQ1 KCX 150 A KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc4 I ZN ZN . A ZN 501 1_555 A ND1 HIS 183 A HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 J ZN ZN . A ZN 502 1_555 A OQ2 KCX 150 A KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 J ZN ZN . A ZN 502 1_555 A NE2 HIS 58 A HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 J ZN ZN . A ZN 502 1_555 A NE2 HIS 60 A HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 J ZN ZN . A ZN 502 1_555 A OD1 ASP 315 A ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? covale ? covale3 B C LEU 149 B LEU 149 1_555 B N KCX 150 B KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 B C KCX 150 B KCX 150 1_555 B N VAL 151 B VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc9 K ZN ZN . B ZN 501 1_555 B OQ1 KCX 150 B KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc10 K ZN ZN . B ZN 501 1_555 B NE2 HIS 239 B HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc11 K ZN ZN . B ZN 501 1_555 B ND1 HIS 183 B HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 L ZN ZN . B ZN 502 1_555 B NE2 HIS 60 B HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc13 L ZN ZN . B ZN 502 1_555 B NE2 HIS 58 B HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc14 L ZN ZN . B ZN 502 1_555 B OD1 ASP 315 B ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc15 L ZN ZN . B ZN 502 1_555 B OQ2 KCX 150 B KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? covale ? covale5 C C LEU 149 C LEU 149 1_555 C N KCX 150 C KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale6 C C KCX 150 C KCX 150 1_555 C N VAL 151 C VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? metalc ? metalc16 M ZN ZN . C ZN 501 1_555 C OQ1 KCX 150 C KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc17 M ZN ZN . C ZN 501 1_555 C ND1 HIS 183 C HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc18 M ZN ZN . C ZN 501 1_555 C NE2 HIS 239 C HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc19 N ZN ZN . C ZN 502 1_555 C OD1 ASP 315 C ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc20 N ZN ZN . C ZN 502 1_555 C NE2 HIS 58 C HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc21 N ZN ZN . C ZN 502 1_555 C NE2 HIS 60 C HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc22 N ZN ZN . C ZN 502 1_555 C OQ2 KCX 150 C KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? covale ? covale7 D C LEU 149 D LEU 149 1_555 D N KCX 150 D KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale8 D C KCX 150 D KCX 150 1_555 D N VAL 151 D VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? metalc ? metalc23 O ZN ZN . D ZN 501 1_555 D OQ1 KCX 150 D KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc24 O ZN ZN . D ZN 501 1_555 D ND1 HIS 183 D HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc25 O ZN ZN . D ZN 501 1_555 D NE2 HIS 239 D HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc26 P ZN ZN . D ZN 502 1_555 D OQ2 KCX 150 D KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc27 P ZN ZN . D ZN 502 1_555 D OD1 ASP 315 D ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc28 P ZN ZN . D ZN 502 1_555 D NE2 HIS 60 D HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc29 P ZN ZN . D ZN 502 1_555 D NE2 HIS 58 D HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? covale ? covale9 E C LEU 149 E LEU 149 1_555 E N KCX 150 E KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale10 E C KCX 150 E KCX 150 1_555 E N VAL 151 E VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc30 Q ZN ZN . E ZN 501 1_555 E OQ1 KCX 150 E KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc31 Q ZN ZN . E ZN 501 1_555 E ND1 HIS 183 E HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc32 Q ZN ZN . E ZN 501 1_555 E NE2 HIS 239 E HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc33 R ZN ZN . E ZN 502 1_555 E OD1 ASP 315 E ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc34 R ZN ZN . E ZN 502 1_555 E NE2 HIS 60 E HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc35 R ZN ZN . E ZN 502 1_555 E OQ2 KCX 150 E KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc36 R ZN ZN . E ZN 502 1_555 E NE2 HIS 58 E HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? covale ? covale11 F C LEU 149 F LEU 149 1_555 F N KCX 150 F KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale12 F C KCX 150 F KCX 150 1_555 F N VAL 151 F VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc37 S ZN ZN . F ZN 501 1_555 F NE2 HIS 239 F HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc38 S ZN ZN . F ZN 501 1_555 F ND1 HIS 183 F HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc39 S ZN ZN . F ZN 501 1_555 F OQ1 KCX 150 F KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc40 T ZN ZN . F ZN 502 1_555 F OQ2 KCX 150 F KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc41 T ZN ZN . F ZN 502 1_555 F NE2 HIS 60 F HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc42 T ZN ZN . F ZN 502 1_555 F NE2 HIS 58 F HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? covale ? covale13 G C LEU 149 G LEU 149 1_555 G N KCX 150 G KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale14 G C KCX 150 G KCX 150 1_555 G N VAL 151 G VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc43 U ZN ZN . G ZN 501 1_555 G ND1 HIS 183 G HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc44 U ZN ZN . G ZN 501 1_555 G OQ1 KCX 150 G KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc45 U ZN ZN . G ZN 501 1_555 G NE2 HIS 239 G HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc46 V ZN ZN . G ZN 502 1_555 G OD1 ASP 315 G ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc47 V ZN ZN . G ZN 502 1_555 G OQ2 KCX 150 G KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc48 V ZN ZN . G ZN 502 1_555 G NE2 HIS 58 G HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc49 V ZN ZN . G ZN 502 1_555 G NE2 HIS 60 G HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? covale ? covale15 H C LEU 149 H LEU 149 1_555 H N KCX 150 H KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale16 H C KCX 150 H KCX 150 1_555 H N VAL 151 H VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? metalc ? metalc50 W ZN ZN . H ZN 501 1_555 H ND1 HIS 183 H HIS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc51 W ZN ZN . H ZN 501 1_555 H NE2 HIS 239 H HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc52 W ZN ZN . H ZN 501 1_555 H OQ1 KCX 150 H KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc53 X ZN ZN . H ZN 502 1_555 H NE2 HIS 60 H HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc54 X ZN ZN . H ZN 502 1_555 H OQ2 KCX 150 H KCX 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc55 X ZN ZN . H ZN 502 1_555 H OD1 ASP 315 H ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc56 X ZN ZN . H ZN 502 1_555 H NE2 HIS 58 H HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1K1D _atom_sites.fract_transf_matrix[1][1] 0.004663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003298 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 ZN A 1 501 501 ZN ZN . J 2 ZN A 1 502 502 ZN ZN . K 2 ZN B 1 501 501 ZN ZN . L 2 ZN B 1 502 502 ZN ZN . M 2 ZN C 1 501 501 ZN ZN . N 2 ZN C 1 502 502 ZN ZN . O 2 ZN D 1 501 501 ZN ZN . P 2 ZN D 1 502 502 ZN ZN . Q 2 ZN E 1 501 501 ZN ZN . R 2 ZN E 1 502 502 ZN ZN . S 2 ZN F 1 501 501 ZN ZN . T 2 ZN F 1 502 502 ZN ZN . U 2 ZN G 1 501 501 ZN ZN . V 2 ZN G 1 502 502 ZN ZN . W 2 ZN H 1 501 501 ZN ZN . X 2 ZN H 1 502 502 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x 80.349 _atom_site.Cartn_y 110.506 _atom_site.Cartn_z 45.43 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #