data_1K1J # _model_server_result.job_id bFDo8RdbWqUUc1NLIWE4zQ _model_server_result.datetime_utc '2024-11-05 14:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1K1J # _exptl.entry_id 1K1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.616 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-ALPHA-(2-NAPHTHYLSULFONYL)-N(3-AMIDINO-L-PHENYLALANINYL)ISOPIPECOLINIC ACID METHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K1J _cell.length_a 62.941 _cell.length_b 68.913 _cell.length_c 63.603 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 B CA CA . A CA 480 1_555 E O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 B CA CA . A CA 480 1_555 E O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C27 H30 N4 O5 S' _chem_comp.formula_weight 522.616 _chem_comp.id FD2 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-ALPHA-(2-NAPHTHYLSULFONYL)-N(3-AMIDINO-L-PHENYLALANINYL)ISOPIPECOLINIC ACID METHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C65 C66 FD2 doub 83 n y C65 C64 FD2 sing 84 n y C65 C34 FD2 sing 85 n n C66 C61 FD2 sing 86 n y C66 H661 FD2 sing 87 n n C64 C63 FD2 doub 88 n y C64 H641 FD2 sing 89 n n C63 C62 FD2 sing 90 n y C63 H631 FD2 sing 91 n n C62 C61 FD2 doub 92 n y C62 H621 FD2 sing 93 n n C61 C25 FD2 sing 94 n n C25 N43 FD2 sing 95 n n C25 N54 FD2 doub 96 z n N43 H431 FD2 sing 97 n n N43 H432 FD2 sing 98 n n N54 H541 FD2 sing 99 n n C34 C31 FD2 sing 100 n n C34 H341 FD2 sing 101 n n C34 H342 FD2 sing 102 n n C31 C35 FD2 sing 103 n n C31 N29 FD2 sing 104 n n C31 H311 FD2 sing 105 n n C35 O36 FD2 doub 106 n n C35 N81 FD2 sing 107 n n N81 C71 FD2 sing 108 n n N81 C75 FD2 sing 109 n n C71 C72 FD2 sing 110 n n C71 H711 FD2 sing 111 n n C71 H712 FD2 sing 112 n n C72 C40 FD2 sing 113 n n C72 H721 FD2 sing 114 n n C72 H722 FD2 sing 115 n n C74 C75 FD2 sing 116 n n C74 C40 FD2 sing 117 n n C74 H741 FD2 sing 118 n n C74 H742 FD2 sing 119 n n C75 H751 FD2 sing 120 n n C75 H752 FD2 sing 121 n n C40 C48 FD2 sing 122 n n C40 H401 FD2 sing 123 n n C48 O49 FD2 doub 124 n n C48 O55 FD2 sing 125 n n O55 C99 FD2 sing 126 n n C99 H991 FD2 sing 127 n n C99 H992 FD2 sing 128 n n C99 H993 FD2 sing 129 n n N29 S12 FD2 sing 130 n n N29 H291 FD2 sing 131 n n S12 O32 FD2 doub 132 n n S12 O33 FD2 doub 133 n n S12 C2 FD2 sing 134 n n C2 C3 FD2 doub 135 n y C2 C1 FD2 sing 136 n y C3 C4 FD2 sing 137 n y C3 H31 FD2 sing 138 n n C4 C10 FD2 doub 139 n y C4 H41 FD2 sing 140 n n C9 C10 FD2 sing 141 n y C9 C1 FD2 doub 142 n y C9 C8 FD2 sing 143 n y C10 C5 FD2 sing 144 n y C1 H11 FD2 sing 145 n n C5 C6 FD2 doub 146 n y C5 H51 FD2 sing 147 n n C6 C7 FD2 sing 148 n y C6 H61 FD2 sing 149 n n C7 C8 FD2 doub 150 n y C7 H71 FD2 sing 151 n n C8 H81 FD2 sing 152 n n # _atom_sites.entry_id 1K1J _atom_sites.fract_transf_matrix[1][1] 0.015888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 FD2 A 1 999 999 FD2 FD2 . E 5 HOH A 1 406 406 HOH HOH . E 5 HOH A 2 408 408 HOH HOH . E 5 HOH A 3 410 410 HOH HOH . E 5 HOH A 4 412 412 HOH HOH . E 5 HOH A 5 415 415 HOH HOH . E 5 HOH A 6 429 429 HOH HOH . E 5 HOH A 7 430 430 HOH HOH . E 5 HOH A 8 457 457 HOH HOH . E 5 HOH A 9 473 473 HOH HOH . E 5 HOH A 10 516 516 HOH HOH . E 5 HOH A 11 562 562 HOH HOH . E 5 HOH A 12 604 604 HOH HOH . E 5 HOH A 13 701 701 HOH HOH . E 5 HOH A 14 703 703 HOH HOH . E 5 HOH A 15 704 704 HOH HOH . E 5 HOH A 16 705 705 HOH HOH . E 5 HOH A 17 706 706 HOH HOH . E 5 HOH A 18 707 707 HOH HOH . E 5 HOH A 19 708 708 HOH HOH . E 5 HOH A 20 709 709 HOH HOH . E 5 HOH A 21 714 714 HOH HOH . E 5 HOH A 22 716 716 HOH HOH . E 5 HOH A 23 717 717 HOH HOH . E 5 HOH A 24 718 718 HOH HOH . E 5 HOH A 25 721 721 HOH HOH . E 5 HOH A 26 722 722 HOH HOH . E 5 HOH A 27 725 725 HOH HOH . E 5 HOH A 28 729 729 HOH HOH . E 5 HOH A 29 801 801 HOH HOH . E 5 HOH A 30 802 802 HOH HOH . E 5 HOH A 31 803 803 HOH HOH . E 5 HOH A 32 805 805 HOH HOH . E 5 HOH A 33 807 807 HOH HOH . E 5 HOH A 34 808 808 HOH HOH . E 5 HOH A 35 809 809 HOH HOH . E 5 HOH A 36 810 810 HOH HOH . E 5 HOH A 37 811 811 HOH HOH . E 5 HOH A 38 812 812 HOH HOH . E 5 HOH A 39 814 814 HOH HOH . E 5 HOH A 40 815 815 HOH HOH . E 5 HOH A 41 818 818 HOH HOH . E 5 HOH A 42 819 819 HOH HOH . E 5 HOH A 43 820 820 HOH HOH . E 5 HOH A 44 822 822 HOH HOH . E 5 HOH A 45 823 823 HOH HOH . E 5 HOH A 46 826 826 HOH HOH . E 5 HOH A 47 827 827 HOH HOH . E 5 HOH A 48 829 829 HOH HOH . E 5 HOH A 49 830 830 HOH HOH . E 5 HOH A 50 832 832 HOH HOH . E 5 HOH A 51 834 834 HOH HOH . E 5 HOH A 52 837 837 HOH HOH . E 5 HOH A 53 838 838 HOH HOH . E 5 HOH A 54 840 840 HOH HOH . E 5 HOH A 55 842 842 HOH HOH . E 5 HOH A 56 845 845 HOH HOH . E 5 HOH A 57 846 846 HOH HOH . E 5 HOH A 58 848 848 HOH HOH . E 5 HOH A 59 849 849 HOH HOH . E 5 HOH A 60 851 851 HOH HOH . E 5 HOH A 61 853 853 HOH HOH . E 5 HOH A 62 854 854 HOH HOH . E 5 HOH A 63 856 856 HOH HOH . E 5 HOH A 64 858 858 HOH HOH . E 5 HOH A 65 859 859 HOH HOH . E 5 HOH A 66 860 860 HOH HOH . E 5 HOH A 67 861 861 HOH HOH . E 5 HOH A 68 862 862 HOH HOH . E 5 HOH A 69 864 864 HOH HOH . E 5 HOH A 70 865 865 HOH HOH . E 5 HOH A 71 866 866 HOH HOH . E 5 HOH A 72 900 900 HOH HOH . E 5 HOH A 73 901 901 HOH HOH . E 5 HOH A 74 903 903 HOH HOH . E 5 HOH A 75 904 904 HOH HOH . E 5 HOH A 76 905 905 HOH HOH . E 5 HOH A 77 906 906 HOH HOH . E 5 HOH A 78 908 908 HOH HOH . E 5 HOH A 79 909 909 HOH HOH . E 5 HOH A 80 911 911 HOH HOH . E 5 HOH A 81 914 914 HOH HOH . E 5 HOH A 82 915 915 HOH HOH . E 5 HOH A 83 920 920 HOH HOH . E 5 HOH A 84 921 921 HOH HOH . E 5 HOH A 85 922 922 HOH HOH . E 5 HOH A 86 923 923 HOH HOH . E 5 HOH A 87 924 924 HOH HOH . E 5 HOH A 88 925 925 HOH HOH . E 5 HOH A 89 928 928 HOH HOH . E 5 HOH A 90 932 932 HOH HOH . E 5 HOH A 91 933 933 HOH HOH . E 5 HOH A 92 935 935 HOH HOH . E 5 HOH A 93 937 937 HOH HOH . E 5 HOH A 94 938 938 HOH HOH . E 5 HOH A 95 939 939 HOH HOH . E 5 HOH A 96 942 942 HOH HOH . E 5 HOH A 97 944 944 HOH HOH . E 5 HOH A 98 947 947 HOH HOH . E 5 HOH A 99 950 950 HOH HOH . E 5 HOH A 100 951 951 HOH HOH . E 5 HOH A 101 952 952 HOH HOH . E 5 HOH A 102 954 954 HOH HOH . E 5 HOH A 103 955 955 HOH HOH . E 5 HOH A 104 956 956 HOH HOH . E 5 HOH A 105 957 957 HOH HOH . E 5 HOH A 106 959 959 HOH HOH . E 5 HOH A 107 963 963 HOH HOH . E 5 HOH A 108 969 969 HOH HOH . E 5 HOH A 109 971 971 HOH HOH . E 5 HOH A 110 972 972 HOH HOH . E 5 HOH A 111 974 974 HOH HOH . E 5 HOH A 112 975 975 HOH HOH . E 5 HOH A 113 982 982 HOH HOH . E 5 HOH A 114 983 983 HOH HOH . E 5 HOH A 115 995 995 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C65 FD2 . . . D 4 -3.035 5.609 20.247 1 16.88 ? C65 FD2 999 A 1 HETATM 2 C C66 FD2 . . . D 4 -3.68 6.861 20.178 1 16.39 ? C66 FD2 999 A 1 HETATM 3 C C64 FD2 . . . D 4 -1.674 5.516 19.893 1 13.26 ? C64 FD2 999 A 1 HETATM 4 C C63 FD2 . . . D 4 -0.965 6.651 19.476 1 16.04 ? C63 FD2 999 A 1 HETATM 5 C C62 FD2 . . . D 4 -1.611 7.899 19.404 1 16 ? C62 FD2 999 A 1 HETATM 6 C C61 FD2 . . . D 4 -2.975 8.014 19.758 1 15.36 ? C61 FD2 999 A 1 HETATM 7 C C25 FD2 . . . D 4 -3.669 9.36 19.67 1 17.42 ? C25 FD2 999 A 1 HETATM 8 N N43 FD2 . . . D 4 -2.976 10.402 19.287 1 13.18 ? N43 FD2 999 A 1 HETATM 9 N N54 FD2 . . . D 4 -4.951 9.466 19.969 1 16.31 ? N54 FD2 999 A 1 HETATM 10 C C34 FD2 . . . D 4 -3.805 4.361 20.707 1 18.44 ? C34 FD2 999 A 1 HETATM 11 C C31 FD2 . . . D 4 -3.793 4.153 22.254 1 24.43 ? C31 FD2 999 A 1 HETATM 12 C C35 FD2 . . . D 4 -2.469 4.514 22.904 1 21.71 ? C35 FD2 999 A 1 HETATM 13 O O36 FD2 . . . D 4 -2.417 5.659 23.345 1 20.78 ? O36 FD2 999 A 1 HETATM 14 N N81 FD2 . . . D 4 -1.414 3.678 23.021 1 21.11 ? N81 FD2 999 A 1 HETATM 15 C C71 FD2 . . . D 4 -1.509 2.346 22.445 1 23.07 ? C71 FD2 999 A 1 HETATM 16 C C72 FD2 . . . D 4 -1.024 1.316 23.492 1 22.6 ? C72 FD2 999 A 1 HETATM 17 C C74 FD2 . . . D 4 0.336 3.158 24.637 1 22.59 ? C74 FD2 999 A 1 HETATM 18 C C75 FD2 . . . D 4 -0.164 4.173 23.571 1 17.78 ? C75 FD2 999 A 1 HETATM 19 C C40 FD2 . . . D 4 0.375 1.708 24.055 1 26.56 ? C40 FD2 999 A 1 HETATM 20 C C48 FD2 . . . D 4 0.796 0.806 25.054 1 29.88 ? C48 FD2 999 A 1 HETATM 21 O O49 FD2 . . . D 4 0.185 -0.187 25.437 1 33.34 ? O49 FD2 999 A 1 HETATM 22 O O55 FD2 . . . D 4 1.999 1.168 25.536 1 32.82 ? O55 FD2 999 A 1 HETATM 23 C C99 FD2 . . . D 4 2.176 0.934 26.951 1 28.59 ? C99 FD2 999 A 1 HETATM 24 N N29 FD2 . . . D 4 -4.863 4.928 22.886 1 26.68 ? N29 FD2 999 A 1 HETATM 25 S S12 FD2 . . . D 4 -5.778 4.256 24.193 1 23.37 ? S12 FD2 999 A 1 HETATM 26 O O32 FD2 . . . D 4 -6.794 5.205 24.567 1 30.18 ? O32 FD2 999 A 1 HETATM 27 O O33 FD2 . . . D 4 -6.113 2.905 23.902 1 26.39 ? O33 FD2 999 A 1 HETATM 28 C C2 FD2 . . . D 4 -4.57 4.289 25.422 1 22.53 ? C2 FD2 999 A 1 HETATM 29 C C3 FD2 . . . D 4 -4.284 5.526 26.017 1 22.88 ? C3 FD2 999 A 1 HETATM 30 C C4 FD2 . . . D 4 -3.306 5.625 27.019 1 22.43 ? C4 FD2 999 A 1 HETATM 31 C C9 FD2 . . . D 4 -2.89 3.207 26.837 1 24.29 ? C9 FD2 999 A 1 HETATM 32 C C10 FD2 . . . D 4 -2.6 4.459 27.439 1 24.13 ? C10 FD2 999 A 1 HETATM 33 C C1 FD2 . . . D 4 -3.895 3.132 25.817 1 21.19 ? C1 FD2 999 A 1 HETATM 34 C C5 FD2 . . . D 4 -1.605 4.523 28.46 1 24.29 ? C5 FD2 999 A 1 HETATM 35 C C6 FD2 . . . D 4 -0.904 3.353 28.88 1 27.68 ? C6 FD2 999 A 1 HETATM 36 C C7 FD2 . . . D 4 -1.208 2.107 28.266 1 29.06 ? C7 FD2 999 A 1 HETATM 37 C C8 FD2 . . . D 4 -2.191 2.037 27.262 1 23.73 ? C8 FD2 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #