data_1K1K # _model_server_result.job_id wjc9BEvhEmoHp_BrH6dA8Q _model_server_result.datetime_utc '2025-02-27 01:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 1K1K # _exptl.entry_id 1K1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K1K _cell.length_a 54.16 _cell.length_b 54.16 _cell.length_c 195.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 54.16 54.16 97.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc6 E FE HEM . B HEM 147 1_555 F O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1K1K _atom_sites.fract_transf_matrix[1][1] 0.018464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 CMO A 1 143 143 CMO CO . E 3 HEM B 1 147 147 HEM HEM . F 4 CMO B 1 148 148 CMO CO . G 5 HOH A 1 200 200 HOH WAT . G 5 HOH A 2 201 201 HOH WAT . G 5 HOH A 3 202 202 HOH WAT . G 5 HOH A 4 203 203 HOH WAT . G 5 HOH A 5 206 206 HOH WAT . G 5 HOH A 6 207 207 HOH WAT . G 5 HOH A 7 208 208 HOH WAT . G 5 HOH A 8 209 209 HOH WAT . G 5 HOH A 9 210 210 HOH WAT . G 5 HOH A 10 211 211 HOH WAT . G 5 HOH A 11 216 216 HOH WAT . G 5 HOH A 12 218 218 HOH WAT . G 5 HOH A 13 220 220 HOH WAT . G 5 HOH A 14 222 222 HOH WAT . G 5 HOH A 15 226 226 HOH WAT . G 5 HOH A 16 228 228 HOH WAT . G 5 HOH A 17 229 229 HOH WAT . G 5 HOH A 18 232 232 HOH WAT . G 5 HOH A 19 233 233 HOH WAT . G 5 HOH A 20 235 235 HOH WAT . G 5 HOH A 21 238 238 HOH WAT . G 5 HOH A 22 239 239 HOH WAT . G 5 HOH A 23 242 242 HOH WAT . G 5 HOH A 24 243 243 HOH WAT . G 5 HOH A 25 244 244 HOH WAT . G 5 HOH A 26 245 245 HOH WAT . G 5 HOH A 27 246 246 HOH WAT . G 5 HOH A 28 247 247 HOH WAT . G 5 HOH A 29 248 248 HOH WAT . G 5 HOH A 30 251 251 HOH WAT . G 5 HOH A 31 253 253 HOH WAT . G 5 HOH A 32 255 255 HOH WAT . G 5 HOH A 33 258 258 HOH WAT . G 5 HOH A 34 259 259 HOH WAT . G 5 HOH A 35 262 262 HOH WAT . G 5 HOH A 36 263 263 HOH WAT . G 5 HOH A 37 265 265 HOH WAT . G 5 HOH A 38 267 267 HOH WAT . G 5 HOH A 39 269 269 HOH WAT . G 5 HOH A 40 271 271 HOH WAT . G 5 HOH A 41 272 272 HOH WAT . G 5 HOH A 42 275 275 HOH WAT . G 5 HOH A 43 276 276 HOH WAT . G 5 HOH A 44 277 277 HOH WAT . G 5 HOH A 45 278 278 HOH WAT . G 5 HOH A 46 280 280 HOH WAT . G 5 HOH A 47 283 283 HOH WAT . G 5 HOH A 48 285 285 HOH WAT . G 5 HOH A 49 286 286 HOH WAT . G 5 HOH A 50 287 287 HOH WAT . G 5 HOH A 51 290 290 HOH WAT . G 5 HOH A 52 292 292 HOH WAT . G 5 HOH A 53 293 293 HOH WAT . G 5 HOH A 54 295 295 HOH WAT . G 5 HOH A 55 296 296 HOH WAT . G 5 HOH A 56 297 297 HOH WAT . G 5 HOH A 57 303 303 HOH WAT . G 5 HOH A 58 304 304 HOH WAT . G 5 HOH A 59 309 309 HOH WAT . G 5 HOH A 60 310 310 HOH WAT . G 5 HOH A 61 311 311 HOH WAT . G 5 HOH A 62 312 312 HOH WAT . H 5 HOH B 1 204 204 HOH WAT . H 5 HOH B 2 205 205 HOH WAT . H 5 HOH B 3 212 212 HOH WAT . H 5 HOH B 4 213 213 HOH WAT . H 5 HOH B 5 214 214 HOH WAT . H 5 HOH B 6 215 215 HOH WAT . H 5 HOH B 7 217 217 HOH WAT . H 5 HOH B 8 219 219 HOH WAT . H 5 HOH B 9 221 221 HOH WAT . H 5 HOH B 10 223 223 HOH WAT . H 5 HOH B 11 224 224 HOH WAT . H 5 HOH B 12 225 225 HOH WAT . H 5 HOH B 13 227 227 HOH WAT . H 5 HOH B 14 230 230 HOH WAT . H 5 HOH B 15 231 231 HOH WAT . H 5 HOH B 16 234 234 HOH WAT . H 5 HOH B 17 236 236 HOH WAT . H 5 HOH B 18 237 237 HOH WAT . H 5 HOH B 19 240 240 HOH WAT . H 5 HOH B 20 241 241 HOH WAT . H 5 HOH B 21 249 249 HOH WAT . H 5 HOH B 22 250 250 HOH WAT . H 5 HOH B 23 252 252 HOH WAT . H 5 HOH B 24 254 254 HOH WAT . H 5 HOH B 25 256 256 HOH WAT . H 5 HOH B 26 257 257 HOH WAT . H 5 HOH B 27 260 260 HOH WAT . H 5 HOH B 28 261 261 HOH WAT . H 5 HOH B 29 264 264 HOH WAT . H 5 HOH B 30 266 266 HOH WAT . H 5 HOH B 31 268 268 HOH WAT . H 5 HOH B 32 270 270 HOH WAT . H 5 HOH B 33 273 273 HOH WAT . H 5 HOH B 34 274 274 HOH WAT . H 5 HOH B 35 279 279 HOH WAT . H 5 HOH B 36 281 281 HOH WAT . H 5 HOH B 37 282 282 HOH WAT . H 5 HOH B 38 284 284 HOH WAT . H 5 HOH B 39 288 288 HOH WAT . H 5 HOH B 40 289 289 HOH WAT . H 5 HOH B 41 291 291 HOH WAT . H 5 HOH B 42 294 294 HOH WAT . H 5 HOH B 43 298 298 HOH WAT . H 5 HOH B 44 299 299 HOH WAT . H 5 HOH B 45 300 300 HOH WAT . H 5 HOH B 46 301 301 HOH WAT . H 5 HOH B 47 302 302 HOH WAT . H 5 HOH B 48 305 305 HOH WAT . H 5 HOH B 49 306 306 HOH WAT . H 5 HOH B 50 307 307 HOH WAT . H 5 HOH B 51 308 308 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 16.251 52.549 31.215 1 14.85 ? CHA HEM 142 A 1 HETATM 2 C CHB HEM . . . C 3 14.29 48.288 32.201 1 12.42 ? CHB HEM 142 A 1 HETATM 3 C CHC HEM . . . C 3 11.151 50.478 35.078 1 15.17 ? CHC HEM 142 A 1 HETATM 4 C CHD HEM . . . C 3 12.886 54.741 33.809 1 10.51 ? CHD HEM 142 A 1 HETATM 5 C C1A HEM . . . C 3 15.973 51.21 31.244 1 16.45 ? C1A HEM 142 A 1 HETATM 6 C C2A HEM . . . C 3 16.681 50.225 30.489 1 18.51 ? C2A HEM 142 A 1 HETATM 7 C C3A HEM . . . C 3 16.138 49.027 30.765 1 17.15 ? C3A HEM 142 A 1 HETATM 8 C C4A HEM . . . C 3 15.064 49.288 31.669 1 15.73 ? C4A HEM 142 A 1 HETATM 9 C CMA HEM . . . C 3 16.566 47.667 30.215 1 16.49 ? CMA HEM 142 A 1 HETATM 10 C CAA HEM . . . C 3 17.793 50.508 29.487 1 20.52 ? CAA HEM 142 A 1 HETATM 11 C CBA HEM . . . C 3 19.154 50.347 30.134 1 28.95 ? CBA HEM 142 A 1 HETATM 12 C CGA HEM . . . C 3 20.291 50.65 29.184 1 36.42 ? CGA HEM 142 A 1 HETATM 13 O O1A HEM . . . C 3 20.093 51.457 28.248 1 46.06 ? O1A HEM 142 A 1 HETATM 14 O O2A HEM . . . C 3 21.385 50.079 29.374 1 40.68 ? O2A HEM 142 A 1 HETATM 15 C C1B HEM . . . C 3 13.274 48.503 33.09 1 13.2 ? C1B HEM 142 A 1 HETATM 16 C C2B HEM . . . C 3 12.493 47.447 33.719 1 16.12 ? C2B HEM 142 A 1 HETATM 17 C C3B HEM . . . C 3 11.652 48.068 34.579 1 11.69 ? C3B HEM 142 A 1 HETATM 18 C C4B HEM . . . C 3 11.889 49.497 34.432 1 16.29 ? C4B HEM 142 A 1 HETATM 19 C CMB HEM . . . C 3 12.614 45.949 33.441 1 11.92 ? CMB HEM 142 A 1 HETATM 20 C CAB HEM . . . C 3 10.808 47.501 35.526 1 14.39 ? CAB HEM 142 A 1 HETATM 21 C CBB HEM . . . C 3 9.794 46.514 35.204 1 18.96 ? CBB HEM 142 A 1 HETATM 22 C C1C HEM . . . C 3 11.347 51.854 34.973 1 18.41 ? C1C HEM 142 A 1 HETATM 23 C C2C HEM . . . C 3 10.463 52.828 35.575 1 13.9 ? C2C HEM 142 A 1 HETATM 24 C C3C HEM . . . C 3 10.947 54.03 35.185 1 14.46 ? C3C HEM 142 A 1 HETATM 25 C C4C HEM . . . C 3 12.111 53.775 34.378 1 13.47 ? C4C HEM 142 A 1 HETATM 26 C CMC HEM . . . C 3 9.304 52.48 36.511 1 14.56 ? CMC HEM 142 A 1 HETATM 27 C CAC HEM . . . C 3 10.482 55.3 35.485 1 15.75 ? CAC HEM 142 A 1 HETATM 28 C CBC HEM . . . C 3 9.093 55.693 35.477 1 19.56 ? CBC HEM 142 A 1 HETATM 29 C C1D HEM . . . C 3 13.985 54.505 33.018 1 13.35 ? C1D HEM 142 A 1 HETATM 30 C C2D HEM . . . C 3 14.814 55.55 32.465 1 16.39 ? C2D HEM 142 A 1 HETATM 31 C C3D HEM . . . C 3 15.792 54.926 31.784 1 18.38 ? C3D HEM 142 A 1 HETATM 32 C C4D HEM . . . C 3 15.546 53.52 31.893 1 15.57 ? C4D HEM 142 A 1 HETATM 33 C CMD HEM . . . C 3 14.614 57.053 32.607 1 13.86 ? CMD HEM 142 A 1 HETATM 34 C CAD HEM . . . C 3 16.912 55.589 30.996 1 17.11 ? CAD HEM 142 A 1 HETATM 35 C CBD HEM . . . C 3 16.357 55.949 29.634 1 20.79 ? CBD HEM 142 A 1 HETATM 36 C CGD HEM . . . C 3 17.39 56.603 28.738 1 25.53 ? CGD HEM 142 A 1 HETATM 37 O O1D HEM . . . C 3 17.928 57.666 29.108 1 30.05 ? O1D HEM 142 A 1 HETATM 38 O O2D HEM . . . C 3 17.664 56.055 27.653 1 34.04 ? O2D HEM 142 A 1 HETATM 39 N NA HEM . . . C 3 14.962 50.642 31.957 1 15.04 ? NA HEM 142 A 1 HETATM 40 N NB HEM . . . C 3 12.909 49.761 33.542 1 14.75 ? NB HEM 142 A 1 HETATM 41 N NC HEM . . . C 3 12.347 52.44 34.226 1 14.58 ? NC HEM 142 A 1 HETATM 42 N ND HEM . . . C 3 14.444 53.27 32.661 1 16.15 ? ND HEM 142 A 1 HETATM 43 FE FE HEM . . . C 3 13.693 51.543 33.105 1 15.28 ? FE HEM 142 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #