data_1K1L
#
_model_server_result.job_id            0FaZ2RJ3GOSfgt-oNlT85g 
_model_server_result.datetime_utc      '2024-11-05 14:47:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1k1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":999}' 
#
_entry.id    1K1L 
#
_exptl.entry_id    1K1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              465.568 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-ALPHA-(2-NAPHTHYLSULFONYL)-3-AMIDINO-L-PHENYLALANINE PIPERAZIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1K1L 
_cell.length_a            63.277 
_cell.length_b            68.832 
_cell.length_c            63.715 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1K1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 C CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 C CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 C CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 C CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc5 C CA CA . A CA 480 1_555 E O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
#
_chem_comp.formula           'C24 H27 N5 O3 S' 
_chem_comp.formula_weight    465.568 
_chem_comp.id                FD3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-ALPHA-(2-NAPHTHYLSULFONYL)-3-AMIDINO-L-PHENYLALANINE PIPERAZIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C65 C66 FD3 doub 83 n y 
C65 C64 FD3 sing 84 n y 
C65 C34 FD3 sing 85 n n 
C66 C61 FD3 sing 86 n y 
C66 H661 FD3 sing 87 n n 
C64 C63 FD3 doub 88 n y 
C64 H641 FD3 sing 89 n n 
C63 C62 FD3 sing 90 n y 
C63 H631 FD3 sing 91 n n 
C62 C61 FD3 doub 92 n y 
C62 H621 FD3 sing 93 n n 
C61 C25 FD3 sing 94 n n 
C25 N43 FD3 sing 95 n n 
C25 N54 FD3 doub 96 z n 
N43 H431 FD3 sing 97 n n 
N43 H432 FD3 sing 98 n n 
N54 H541 FD3 sing 99 n n 
C34 C31 FD3 sing 100 n n 
C34 H341 FD3 sing 101 n n 
C34 H342 FD3 sing 102 n n 
C31 C35 FD3 sing 103 n n 
C31 N29 FD3 sing 104 n n 
C31 H311 FD3 sing 105 n n 
C35 O36 FD3 doub 106 n n 
C35 N81 FD3 sing 107 n n 
N81 C71 FD3 sing 108 n n 
N81 C75 FD3 sing 109 n n 
C71 C72 FD3 sing 110 n n 
C71 H711 FD3 sing 111 n n 
C71 H712 FD3 sing 112 n n 
C72 N40 FD3 sing 113 n n 
C72 H721 FD3 sing 114 n n 
C72 H722 FD3 sing 115 n n 
C74 C75 FD3 sing 116 n n 
C74 N40 FD3 sing 117 n n 
C74 H741 FD3 sing 118 n n 
C74 H742 FD3 sing 119 n n 
C75 H751 FD3 sing 120 n n 
C75 H752 FD3 sing 121 n n 
N40 H401 FD3 sing 122 n n 
N29 S12 FD3 sing 123 n n 
N29 H291 FD3 sing 124 n n 
S12 O32 FD3 doub 125 n n 
S12 O33 FD3 doub 126 n n 
S12 C2 FD3 sing 127 n n 
C2 C3 FD3 doub 128 n y 
C2 C1 FD3 sing 129 n y 
C3 C4 FD3 sing 130 n y 
C3 H31 FD3 sing 131 n n 
C4 C10 FD3 doub 132 n y 
C4 H41 FD3 sing 133 n n 
C9 C10 FD3 sing 134 n y 
C9 C1 FD3 doub 135 n y 
C9 C8 FD3 sing 136 n y 
C10 C5 FD3 sing 137 n y 
C1 H11 FD3 sing 138 n n 
C5 C6 FD3 doub 139 n y 
C5 H51 FD3 sing 140 n n 
C6 C7 FD3 sing 141 n y 
C6 H61 FD3 sing 142 n n 
C7 C8 FD3 doub 143 n y 
C7 H71 FD3 sing 144 n n 
C8 H81 FD3 sing 145 n n 
#
_atom_sites.entry_id                     1K1L 
_atom_sites.fract_transf_matrix[1][1]    0.015804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014528 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 600 999 SO4 SO4 . 
C 3 CA A 1 480 480 CA CA . 
D 4 FD3 A 1 999 999 FD3 FD3 . 
E 5 HOH A 1 406 406 HOH HOH . 
E 5 HOH A 2 408 408 HOH HOH . 
E 5 HOH A 3 410 410 HOH HOH . 
E 5 HOH A 4 412 412 HOH HOH . 
E 5 HOH A 5 415 415 HOH HOH . 
E 5 HOH A 6 429 429 HOH HOH . 
E 5 HOH A 7 430 430 HOH HOH . 
E 5 HOH A 8 457 457 HOH HOH . 
E 5 HOH A 9 473 473 HOH HOH . 
E 5 HOH A 10 516 516 HOH HOH . 
E 5 HOH A 11 562 562 HOH HOH . 
E 5 HOH A 12 701 701 HOH HOH . 
E 5 HOH A 13 703 703 HOH HOH . 
E 5 HOH A 14 704 704 HOH HOH . 
E 5 HOH A 15 705 705 HOH HOH . 
E 5 HOH A 16 706 706 HOH HOH . 
E 5 HOH A 17 707 707 HOH HOH . 
E 5 HOH A 18 708 708 HOH HOH . 
E 5 HOH A 19 709 709 HOH HOH . 
E 5 HOH A 20 716 716 HOH HOH . 
E 5 HOH A 21 717 717 HOH HOH . 
E 5 HOH A 22 718 718 HOH HOH . 
E 5 HOH A 23 721 721 HOH HOH . 
E 5 HOH A 24 722 722 HOH HOH . 
E 5 HOH A 25 725 725 HOH HOH . 
E 5 HOH A 26 729 729 HOH HOH . 
E 5 HOH A 27 802 802 HOH HOH . 
E 5 HOH A 28 803 803 HOH HOH . 
E 5 HOH A 29 804 804 HOH HOH . 
E 5 HOH A 30 805 805 HOH HOH . 
E 5 HOH A 31 807 807 HOH HOH . 
E 5 HOH A 32 809 809 HOH HOH . 
E 5 HOH A 33 810 810 HOH HOH . 
E 5 HOH A 34 811 811 HOH HOH . 
E 5 HOH A 35 813 813 HOH HOH . 
E 5 HOH A 36 815 815 HOH HOH . 
E 5 HOH A 37 817 817 HOH HOH . 
E 5 HOH A 38 819 819 HOH HOH . 
E 5 HOH A 39 821 821 HOH HOH . 
E 5 HOH A 40 822 822 HOH HOH . 
E 5 HOH A 41 823 823 HOH HOH . 
E 5 HOH A 42 826 826 HOH HOH . 
E 5 HOH A 43 827 827 HOH HOH . 
E 5 HOH A 44 829 829 HOH HOH . 
E 5 HOH A 45 830 830 HOH HOH . 
E 5 HOH A 46 840 840 HOH HOH . 
E 5 HOH A 47 842 842 HOH HOH . 
E 5 HOH A 48 846 846 HOH HOH . 
E 5 HOH A 49 848 848 HOH HOH . 
E 5 HOH A 50 849 849 HOH HOH . 
E 5 HOH A 51 853 853 HOH HOH . 
E 5 HOH A 52 854 854 HOH HOH . 
E 5 HOH A 53 856 856 HOH HOH . 
E 5 HOH A 54 858 858 HOH HOH . 
E 5 HOH A 55 861 861 HOH HOH . 
E 5 HOH A 56 862 862 HOH HOH . 
E 5 HOH A 57 864 864 HOH HOH . 
E 5 HOH A 58 865 865 HOH HOH . 
E 5 HOH A 59 904 904 HOH HOH . 
E 5 HOH A 60 908 908 HOH HOH . 
E 5 HOH A 61 909 909 HOH HOH . 
E 5 HOH A 62 911 911 HOH HOH . 
E 5 HOH A 63 915 915 HOH HOH . 
E 5 HOH A 64 919 919 HOH HOH . 
E 5 HOH A 65 920 920 HOH HOH . 
E 5 HOH A 66 921 921 HOH HOH . 
E 5 HOH A 67 922 922 HOH HOH . 
E 5 HOH A 68 924 924 HOH HOH . 
E 5 HOH A 69 925 925 HOH HOH . 
E 5 HOH A 70 926 926 HOH HOH . 
E 5 HOH A 71 929 929 HOH HOH . 
E 5 HOH A 72 932 932 HOH HOH . 
E 5 HOH A 73 934 934 HOH HOH . 
E 5 HOH A 74 935 935 HOH HOH . 
E 5 HOH A 75 937 937 HOH HOH . 
E 5 HOH A 76 942 942 HOH HOH . 
E 5 HOH A 77 946 946 HOH HOH . 
E 5 HOH A 78 947 947 HOH HOH . 
E 5 HOH A 79 950 950 HOH HOH . 
E 5 HOH A 80 951 951 HOH HOH . 
E 5 HOH A 81 952 952 HOH HOH . 
E 5 HOH A 82 953 953 HOH HOH . 
E 5 HOH A 83 954 954 HOH HOH . 
E 5 HOH A 84 955 955 HOH HOH . 
E 5 HOH A 85 956 956 HOH HOH . 
E 5 HOH A 86 957 957 HOH HOH . 
E 5 HOH A 87 958 958 HOH HOH . 
E 5 HOH A 88 959 959 HOH HOH . 
E 5 HOH A 89 963 963 HOH HOH . 
E 5 HOH A 90 965 965 HOH HOH . 
E 5 HOH A 91 966 966 HOH HOH . 
E 5 HOH A 92 969 969 HOH HOH . 
E 5 HOH A 93 972 972 HOH HOH . 
E 5 HOH A 94 973 973 HOH HOH . 
E 5 HOH A 95 974 974 HOH HOH . 
E 5 HOH A 96 975 975 HOH HOH . 
E 5 HOH A 97 982 982 HOH HOH . 
E 5 HOH A 98 985 985 HOH HOH . 
E 5 HOH A 99 991 991 HOH HOH . 
E 5 HOH A 100 992 992 HOH HOH . 
E 5 HOH A 101 993 993 HOH HOH . 
E 5 HOH A 102 994 994 HOH HOH . 
E 5 HOH A 103 995 995 HOH HOH . 
E 5 HOH A 104 996 996 HOH HOH . 
E 5 HOH A 105 997 997 HOH HOH . 
E 5 HOH A 106 998 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C65 FD3 . . . D 4 -3.245 5.748 20.208 1 26.32 ? C65 FD3 999 A 1 
HETATM 2 C C66 FD3 . . . D 4 -3.813 7.028 20.103 1 26.72 ? C66 FD3 999 A 1 
HETATM 3 C C64 FD3 . . . D 4 -1.896 5.564 19.825 1 21.45 ? C64 FD3 999 A 1 
HETATM 4 C C63 FD3 . . . D 4 -1.128 6.645 19.371 1 18.1 ? C63 FD3 999 A 1 
HETATM 5 C C62 FD3 . . . D 4 -1.707 7.924 19.276 1 23.74 ? C62 FD3 999 A 1 
HETATM 6 C C61 FD3 . . . D 4 -3.056 8.117 19.64 1 24.91 ? C61 FD3 999 A 1 
HETATM 7 C C25 FD3 . . . D 4 -3.694 9.474 19.544 1 25.48 ? C25 FD3 999 A 1 
HETATM 8 N N43 FD3 . . . D 4 -2.981 10.491 19.139 1 25.26 ? N43 FD3 999 A 1 
HETATM 9 N N54 FD3 . . . D 4 -4.956 9.614 19.886 1 26.12 ? N54 FD3 999 A 1 
HETATM 10 C C34 FD3 . . . D 4 -4.09 4.56 20.713 1 28.9 ? C34 FD3 999 A 1 
HETATM 11 C C31 FD3 . . . D 4 -4.052 4.382 22.242 1 30.06 ? C31 FD3 999 A 1 
HETATM 12 C C35 FD3 . . . D 4 -2.733 4.759 22.885 1 28.62 ? C35 FD3 999 A 1 
HETATM 13 O O36 FD3 . . . D 4 -2.706 5.896 23.353 1 26.96 ? O36 FD3 999 A 1 
HETATM 14 N N81 FD3 . . . D 4 -1.653 3.922 22.912 1 32.12 ? N81 FD3 999 A 1 
HETATM 15 C C71 FD3 . . . D 4 -1.595 2.734 22.03 1 35.07 ? C71 FD3 999 A 1 
HETATM 16 C C72 FD3 . . . D 4 -1.119 1.567 22.931 1 33.94 ? C72 FD3 999 A 1 
HETATM 17 C C74 FD3 . . . D 4 0.13 3.304 24.376 1 34.76 ? C74 FD3 999 A 1 
HETATM 18 C C75 FD3 . . . D 4 -0.372 4.427 23.437 1 34.58 ? C75 FD3 999 A 1 
HETATM 19 N N40 FD3 . . . D 4 -0.025 1.937 23.806 1 35.13 ? N40 FD3 999 A 1 
HETATM 20 N N29 FD3 . . . D 4 -5.156 5.101 22.893 1 26.62 ? N29 FD3 999 A 1 
HETATM 21 S S12 FD3 . . . D 4 -6.016 4.356 24.182 1 22.46 ? S12 FD3 999 A 1 
HETATM 22 O O32 FD3 . . . D 4 -7.07 5.238 24.608 1 24.32 ? O32 FD3 999 A 1 
HETATM 23 O O33 FD3 . . . D 4 -6.266 2.988 23.875 1 22.22 ? O33 FD3 999 A 1 
HETATM 24 C C2 FD3 . . . D 4 -4.759 4.41 25.36 1 23.8 ? C2 FD3 999 A 1 
HETATM 25 C C3 FD3 . . . D 4 -4.471 5.648 25.958 1 28.52 ? C3 FD3 999 A 1 
HETATM 26 C C4 FD3 . . . D 4 -3.443 5.755 26.929 1 27.44 ? C4 FD3 999 A 1 
HETATM 27 C C9 FD3 . . . D 4 -3.019 3.33 26.677 1 25.16 ? C9 FD3 999 A 1 
HETATM 28 C C10 FD3 . . . D 4 -2.71 4.586 27.297 1 25.37 ? C10 FD3 999 A 1 
HETATM 29 C C1 FD3 . . . D 4 -4.054 3.259 25.707 1 22.18 ? C1 FD3 999 A 1 
HETATM 30 C C5 FD3 . . . D 4 -1.668 4.628 28.275 1 28.06 ? C5 FD3 999 A 1 
HETATM 31 C C6 FD3 . . . D 4 -0.945 3.441 28.625 1 27.75 ? C6 FD3 999 A 1 
HETATM 32 C C7 FD3 . . . D 4 -1.266 2.211 28 1 27.37 ? C7 FD3 999 A 1 
HETATM 33 C C8 FD3 . . . D 4 -2.291 2.15 27.033 1 25.67 ? C8 FD3 999 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#