data_1K1M # _model_server_result.job_id OQYCFzNcX695SiYmYbCrxg _model_server_result.datetime_utc '2024-11-05 12:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1K1M # _exptl.entry_id 1K1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.605 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ALPHA-(2-NAPHTHYLSULFONYL)-N(3-AMIDINO-L-PHENYLALANINYL)-4-ACETYL-PIPERAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1K1M _cell.length_a 63.48 _cell.length_b 68.938 _cell.length_c 63.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc5 B CA CA . A CA 480 1_555 E O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C26 H29 N5 O4 S' _chem_comp.formula_weight 507.605 _chem_comp.id FD4 _chem_comp.mon_nstd_flag . _chem_comp.name N-ALPHA-(2-NAPHTHYLSULFONYL)-N(3-AMIDINO-L-PHENYLALANINYL)-4-ACETYL-PIPERAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C65 C66 FD4 doub 83 n y C65 C64 FD4 sing 84 n y C65 C34 FD4 sing 85 n n C66 C61 FD4 sing 86 n y C66 H661 FD4 sing 87 n n C64 C63 FD4 doub 88 n y C64 H641 FD4 sing 89 n n C63 C62 FD4 sing 90 n y C63 H631 FD4 sing 91 n n C62 C61 FD4 doub 92 n y C62 H621 FD4 sing 93 n n C61 C25 FD4 sing 94 n n C25 N43 FD4 sing 95 n n C25 N54 FD4 doub 96 n n N43 H431 FD4 sing 97 n n N43 H432 FD4 sing 98 n n N54 H541 FD4 sing 99 n n C34 C31 FD4 sing 100 n n C34 H341 FD4 sing 101 n n C34 H342 FD4 sing 102 n n C31 C35 FD4 sing 103 n n C31 N29 FD4 sing 104 n n C31 H311 FD4 sing 105 n n C35 O36 FD4 doub 106 n n C35 N81 FD4 sing 107 n n N81 C71 FD4 sing 108 n n N81 C75 FD4 sing 109 n n C71 C72 FD4 sing 110 n n C71 H711 FD4 sing 111 n n C71 H712 FD4 sing 112 n n C72 N40 FD4 sing 113 n n C72 H721 FD4 sing 114 n n C72 H722 FD4 sing 115 n n C74 C75 FD4 sing 116 n n C74 N40 FD4 sing 117 n n C74 H741 FD4 sing 118 n n C74 H742 FD4 sing 119 n n C75 H751 FD4 sing 120 n n C75 H752 FD4 sing 121 n n N40 C48 FD4 sing 122 n n N29 S12 FD4 sing 123 n n N29 H291 FD4 sing 124 n n S12 O32 FD4 doub 125 n n S12 O33 FD4 doub 126 n n S12 C2 FD4 sing 127 n n C2 C3 FD4 doub 128 n y C2 C1 FD4 sing 129 n y C3 C4 FD4 sing 130 n y C3 H31 FD4 sing 131 n n C4 C10 FD4 doub 132 n y C4 H41 FD4 sing 133 n n C9 C10 FD4 sing 134 n y C9 C1 FD4 doub 135 n y C9 C8 FD4 sing 136 n y C10 C5 FD4 sing 137 n y C1 H11 FD4 sing 138 n n C5 C6 FD4 doub 139 n y C5 H51 FD4 sing 140 n n C6 C7 FD4 sing 141 n y C6 H61 FD4 sing 142 n n C7 C8 FD4 doub 143 n y C7 H71 FD4 sing 144 n n C8 H81 FD4 sing 145 n n C48 O49 FD4 doub 146 n n C48 C55 FD4 sing 147 n n C55 H551 FD4 sing 148 n n C55 H552 FD4 sing 149 n n C55 H553 FD4 sing 150 n n # _atom_sites.entry_id 1K1M _atom_sites.fract_transf_matrix[1][1] 0.015753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 FD4 A 1 999 999 FD4 FD4 . E 5 HOH A 1 406 406 HOH HOH . E 5 HOH A 2 408 408 HOH HOH . E 5 HOH A 3 410 410 HOH HOH . E 5 HOH A 4 412 412 HOH HOH . E 5 HOH A 5 415 415 HOH HOH . E 5 HOH A 6 429 429 HOH HOH . E 5 HOH A 7 430 430 HOH HOH . E 5 HOH A 8 457 457 HOH HOH . E 5 HOH A 9 473 473 HOH HOH . E 5 HOH A 10 516 516 HOH HOH . E 5 HOH A 11 562 562 HOH HOH . E 5 HOH A 12 604 604 HOH HOH . E 5 HOH A 13 701 701 HOH HOH . E 5 HOH A 14 703 703 HOH HOH . E 5 HOH A 15 704 704 HOH HOH . E 5 HOH A 16 705 705 HOH HOH . E 5 HOH A 17 706 706 HOH HOH . E 5 HOH A 18 707 707 HOH HOH . E 5 HOH A 19 708 708 HOH HOH . E 5 HOH A 20 709 709 HOH HOH . E 5 HOH A 21 716 716 HOH HOH . E 5 HOH A 22 717 717 HOH HOH . E 5 HOH A 23 718 718 HOH HOH . E 5 HOH A 24 721 721 HOH HOH . E 5 HOH A 25 722 722 HOH HOH . E 5 HOH A 26 723 723 HOH HOH . E 5 HOH A 27 725 725 HOH HOH . E 5 HOH A 28 729 729 HOH HOH . E 5 HOH A 29 801 801 HOH HOH . E 5 HOH A 30 802 802 HOH HOH . E 5 HOH A 31 803 803 HOH HOH . E 5 HOH A 32 805 805 HOH HOH . E 5 HOH A 33 807 807 HOH HOH . E 5 HOH A 34 808 808 HOH HOH . E 5 HOH A 35 809 809 HOH HOH . E 5 HOH A 36 810 810 HOH HOH . E 5 HOH A 37 811 811 HOH HOH . E 5 HOH A 38 812 812 HOH HOH . E 5 HOH A 39 813 813 HOH HOH . E 5 HOH A 40 814 814 HOH HOH . E 5 HOH A 41 815 815 HOH HOH . E 5 HOH A 42 817 817 HOH HOH . E 5 HOH A 43 818 818 HOH HOH . E 5 HOH A 44 819 819 HOH HOH . E 5 HOH A 45 820 820 HOH HOH . E 5 HOH A 46 821 821 HOH HOH . E 5 HOH A 47 822 822 HOH HOH . E 5 HOH A 48 823 823 HOH HOH . E 5 HOH A 49 824 824 HOH HOH . E 5 HOH A 50 825 825 HOH HOH . E 5 HOH A 51 826 826 HOH HOH . E 5 HOH A 52 827 827 HOH HOH . E 5 HOH A 53 829 829 HOH HOH . E 5 HOH A 54 830 830 HOH HOH . E 5 HOH A 55 832 832 HOH HOH . E 5 HOH A 56 834 834 HOH HOH . E 5 HOH A 57 837 837 HOH HOH . E 5 HOH A 58 838 838 HOH HOH . E 5 HOH A 59 840 840 HOH HOH . E 5 HOH A 60 842 842 HOH HOH . E 5 HOH A 61 845 845 HOH HOH . E 5 HOH A 62 846 846 HOH HOH . E 5 HOH A 63 847 847 HOH HOH . E 5 HOH A 64 848 848 HOH HOH . E 5 HOH A 65 849 849 HOH HOH . E 5 HOH A 66 851 851 HOH HOH . E 5 HOH A 67 853 853 HOH HOH . E 5 HOH A 68 854 854 HOH HOH . E 5 HOH A 69 856 856 HOH HOH . E 5 HOH A 70 858 858 HOH HOH . E 5 HOH A 71 859 859 HOH HOH . E 5 HOH A 72 860 860 HOH HOH . E 5 HOH A 73 861 861 HOH HOH . E 5 HOH A 74 862 862 HOH HOH . E 5 HOH A 75 864 864 HOH HOH . E 5 HOH A 76 865 865 HOH HOH . E 5 HOH A 77 866 866 HOH HOH . E 5 HOH A 78 901 901 HOH HOH . E 5 HOH A 79 903 903 HOH HOH . E 5 HOH A 80 904 904 HOH HOH . E 5 HOH A 81 905 905 HOH HOH . E 5 HOH A 82 906 906 HOH HOH . E 5 HOH A 83 908 908 HOH HOH . E 5 HOH A 84 909 909 HOH HOH . E 5 HOH A 85 911 911 HOH HOH . E 5 HOH A 86 914 914 HOH HOH . E 5 HOH A 87 915 915 HOH HOH . E 5 HOH A 88 917 917 HOH HOH . E 5 HOH A 89 919 919 HOH HOH . E 5 HOH A 90 920 920 HOH HOH . E 5 HOH A 91 921 921 HOH HOH . E 5 HOH A 92 922 922 HOH HOH . E 5 HOH A 93 923 923 HOH HOH . E 5 HOH A 94 924 924 HOH HOH . E 5 HOH A 95 925 925 HOH HOH . E 5 HOH A 96 928 928 HOH HOH . E 5 HOH A 97 932 932 HOH HOH . E 5 HOH A 98 933 933 HOH HOH . E 5 HOH A 99 935 935 HOH HOH . E 5 HOH A 100 937 937 HOH HOH . E 5 HOH A 101 938 938 HOH HOH . E 5 HOH A 102 939 939 HOH HOH . E 5 HOH A 103 942 942 HOH HOH . E 5 HOH A 104 944 944 HOH HOH . E 5 HOH A 105 946 946 HOH HOH . E 5 HOH A 106 947 947 HOH HOH . E 5 HOH A 107 950 950 HOH HOH . E 5 HOH A 108 951 951 HOH HOH . E 5 HOH A 109 952 952 HOH HOH . E 5 HOH A 110 954 954 HOH HOH . E 5 HOH A 111 955 955 HOH HOH . E 5 HOH A 112 956 956 HOH HOH . E 5 HOH A 113 957 957 HOH HOH . E 5 HOH A 114 959 959 HOH HOH . E 5 HOH A 115 963 963 HOH HOH . E 5 HOH A 116 966 966 HOH HOH . E 5 HOH A 117 969 969 HOH HOH . E 5 HOH A 118 970 970 HOH HOH . E 5 HOH A 119 972 972 HOH HOH . E 5 HOH A 120 974 974 HOH HOH . E 5 HOH A 121 975 975 HOH HOH . E 5 HOH A 122 981 981 HOH HOH . E 5 HOH A 123 982 982 HOH HOH . E 5 HOH A 124 983 983 HOH HOH . E 5 HOH A 125 985 985 HOH HOH . E 5 HOH A 126 991 991 HOH HOH . E 5 HOH A 127 995 995 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C65 FD4 . . . D 4 -3.173 5.654 20.249 1 15.75 ? C65 FD4 999 A 1 HETATM 2 C C66 FD4 . . . D 4 -3.745 6.936 20.207 1 14.95 ? C66 FD4 999 A 1 HETATM 3 C C64 FD4 . . . D 4 -1.843 5.482 19.839 1 10.79 ? C64 FD4 999 A 1 HETATM 4 C C63 FD4 . . . D 4 -1.084 6.581 19.416 1 12.73 ? C63 FD4 999 A 1 HETATM 5 C C62 FD4 . . . D 4 -1.656 7.865 19.379 1 15.13 ? C62 FD4 999 A 1 HETATM 6 C C61 FD4 . . . D 4 -2.997 8.049 19.777 1 13.9 ? C61 FD4 999 A 1 HETATM 7 C C25 FD4 . . . D 4 -3.634 9.426 19.742 1 15.95 ? C25 FD4 999 A 1 HETATM 8 N N43 FD4 . . . D 4 -2.955 10.44 19.266 1 12.36 ? N43 FD4 999 A 1 HETATM 9 N N54 FD4 . . . D 4 -4.863 9.576 20.184 1 13.49 ? N54 FD4 999 A 1 HETATM 10 C C34 FD4 . . . D 4 -3.997 4.442 20.713 1 17.49 ? C34 FD4 999 A 1 HETATM 11 C C31 FD4 . . . D 4 -3.94 4.216 22.259 1 19.15 ? C31 FD4 999 A 1 HETATM 12 C C35 FD4 . . . D 4 -2.61 4.618 22.862 1 18.4 ? C35 FD4 999 A 1 HETATM 13 O O36 FD4 . . . D 4 -2.517 5.804 23.154 1 16.08 ? O36 FD4 999 A 1 HETATM 14 N N81 FD4 . . . D 4 -1.575 3.758 23.068 1 17.32 ? N81 FD4 999 A 1 HETATM 15 C C71 FD4 . . . D 4 -1.545 2.438 22.44 1 21.34 ? C71 FD4 999 A 1 HETATM 16 C C72 FD4 . . . D 4 -1.129 1.475 23.569 1 21.92 ? C72 FD4 999 A 1 HETATM 17 C C74 FD4 . . . D 4 0.16 3.396 24.659 1 17.28 ? C74 FD4 999 A 1 HETATM 18 C C75 FD4 . . . D 4 -0.294 4.302 23.497 1 16.73 ? C75 FD4 999 A 1 HETATM 19 N N40 FD4 . . . D 4 -0.002 1.973 24.364 1 20.05 ? N40 FD4 999 A 1 HETATM 20 N N29 FD4 . . . D 4 -5.015 4.948 22.932 1 19.08 ? N29 FD4 999 A 1 HETATM 21 S S12 FD4 . . . D 4 -5.889 4.253 24.253 1 16.14 ? S12 FD4 999 A 1 HETATM 22 O O32 FD4 . . . D 4 -6.929 5.166 24.637 1 18.38 ? O32 FD4 999 A 1 HETATM 23 O O33 FD4 . . . D 4 -6.218 2.879 23.927 1 16.36 ? O33 FD4 999 A 1 HETATM 24 C C2 FD4 . . . D 4 -4.656 4.29 25.495 1 14.83 ? C2 FD4 999 A 1 HETATM 25 C C3 FD4 . . . D 4 -4.3 5.515 26.086 1 17.02 ? C3 FD4 999 A 1 HETATM 26 C C4 FD4 . . . D 4 -3.327 5.579 27.085 1 15.17 ? C4 FD4 999 A 1 HETATM 27 C C9 FD4 . . . D 4 -3.035 3.174 26.951 1 17.07 ? C9 FD4 999 A 1 HETATM 28 C C10 FD4 . . . D 4 -2.693 4.419 27.522 1 18.4 ? C10 FD4 999 A 1 HETATM 29 C C1 FD4 . . . D 4 -4.029 3.111 25.933 1 13.45 ? C1 FD4 999 A 1 HETATM 30 C C5 FD4 . . . D 4 -1.728 4.486 28.521 1 19.55 ? C5 FD4 999 A 1 HETATM 31 C C6 FD4 . . . D 4 -1.064 3.326 28.927 1 19.57 ? C6 FD4 999 A 1 HETATM 32 C C7 FD4 . . . D 4 -1.418 2.083 28.378 1 23.68 ? C7 FD4 999 A 1 HETATM 33 C C8 FD4 . . . D 4 -2.4 2.006 27.384 1 20.37 ? C8 FD4 999 A 1 HETATM 34 C C48 FD4 . . . D 4 0.932 1.067 24.796 1 21.63 ? C48 FD4 999 A 1 HETATM 35 O O49 FD4 . . . D 4 1.847 1.394 25.538 1 27.49 ? O49 FD4 999 A 1 HETATM 36 C C55 FD4 . . . D 4 0.891 -0.395 24.408 1 17.52 ? C55 FD4 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #