data_1K1O # _model_server_result.job_id rn-Tt8wOjSmUYt2STfJQDQ _model_server_result.datetime_utc '2024-10-24 04:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1k1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1K1O # _exptl.entry_id 1K1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.564 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(1R)-2-((2S)-2-{[(3-{[AMINO(IMINO)METHYL]AMINO}PROPYL)AMINO]CARBONYL}PIPERIDINYL)-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]AMINO}ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1K1O _cell.length_a 55.153 _cell.length_b 55.153 _cell.length_c 109.674 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1K1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc5 B CA CA . A CA 480 1_555 D O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 B CA CA . A CA 480 1_555 D O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C21 H38 N6 O4' _chem_comp.formula_weight 438.564 _chem_comp.id IGN _chem_comp.mon_nstd_flag . _chem_comp.name '{[(1R)-2-((2S)-2-{[(3-{[AMINO(IMINO)METHYL]AMINO}PROPYL)AMINO]CARBONYL}PIPERIDINYL)-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]AMINO}ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INOGATRAN (ASTRA-ZENECA)' # _atom_sites.entry_id 1K1O _atom_sites.fract_transf_matrix[1][1] 0.018131 _atom_sites.fract_transf_matrix[1][2] 0.010468 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 IGN A 1 999 999 IGN ING . D 4 HOH A 1 406 406 HOH HOH . D 4 HOH A 2 408 408 HOH HOH . D 4 HOH A 3 410 410 HOH HOH . D 4 HOH A 4 412 412 HOH HOH . D 4 HOH A 5 416 416 HOH HOH . D 4 HOH A 6 429 429 HOH HOH . D 4 HOH A 7 430 430 HOH HOH . D 4 HOH A 8 439 439 HOH HOH . D 4 HOH A 9 457 457 HOH HOH . D 4 HOH A 10 470 470 HOH HOH . D 4 HOH A 11 473 473 HOH HOH . D 4 HOH A 12 516 516 HOH HOH . D 4 HOH A 13 530 530 HOH HOH . D 4 HOH A 14 562 562 HOH HOH . D 4 HOH A 15 604 604 HOH HOH . D 4 HOH A 16 700 700 HOH HOH . D 4 HOH A 17 701 701 HOH HOH . D 4 HOH A 18 703 703 HOH HOH . D 4 HOH A 19 704 704 HOH HOH . D 4 HOH A 20 705 705 HOH HOH . D 4 HOH A 21 706 706 HOH HOH . D 4 HOH A 22 707 707 HOH HOH . D 4 HOH A 23 708 708 HOH HOH . D 4 HOH A 24 709 709 HOH HOH . D 4 HOH A 25 711 711 HOH HOH . D 4 HOH A 26 712 712 HOH HOH . D 4 HOH A 27 713 713 HOH HOH . D 4 HOH A 28 714 714 HOH HOH . D 4 HOH A 29 715 715 HOH HOH . D 4 HOH A 30 716 716 HOH HOH . D 4 HOH A 31 717 717 HOH HOH . D 4 HOH A 32 718 718 HOH HOH . D 4 HOH A 33 719 719 HOH HOH . D 4 HOH A 34 720 720 HOH HOH . D 4 HOH A 35 721 721 HOH HOH . D 4 HOH A 36 722 722 HOH HOH . D 4 HOH A 37 723 723 HOH HOH . D 4 HOH A 38 725 725 HOH HOH . D 4 HOH A 39 726 726 HOH HOH . D 4 HOH A 40 734 734 HOH HOH . D 4 HOH A 41 736 736 HOH HOH . D 4 HOH A 42 737 737 HOH HOH . D 4 HOH A 43 746 746 HOH HOH . D 4 HOH A 44 755 755 HOH HOH . D 4 HOH A 45 757 757 HOH HOH . D 4 HOH A 46 759 759 HOH HOH . D 4 HOH A 47 760 760 HOH HOH . D 4 HOH A 48 761 761 HOH HOH . D 4 HOH A 49 764 764 HOH HOH . D 4 HOH A 50 766 766 HOH HOH . D 4 HOH A 51 769 769 HOH HOH . D 4 HOH A 52 770 770 HOH HOH . D 4 HOH A 53 772 772 HOH HOH . D 4 HOH A 54 773 773 HOH HOH . D 4 HOH A 55 774 774 HOH HOH . D 4 HOH A 56 776 776 HOH HOH . D 4 HOH A 57 777 777 HOH HOH . D 4 HOH A 58 778 778 HOH HOH . D 4 HOH A 59 779 779 HOH HOH . D 4 HOH A 60 780 780 HOH HOH . D 4 HOH A 61 782 782 HOH HOH . D 4 HOH A 62 783 783 HOH HOH . D 4 HOH A 63 784 784 HOH HOH . D 4 HOH A 64 785 785 HOH HOH . D 4 HOH A 65 786 786 HOH HOH . D 4 HOH A 66 788 788 HOH HOH . D 4 HOH A 67 790 790 HOH HOH . D 4 HOH A 68 792 792 HOH HOH . D 4 HOH A 69 793 793 HOH HOH . D 4 HOH A 70 901 901 HOH HOH . D 4 HOH A 71 902 902 HOH HOH . D 4 HOH A 72 903 903 HOH HOH . D 4 HOH A 73 906 906 HOH HOH . D 4 HOH A 74 907 907 HOH HOH . D 4 HOH A 75 908 908 HOH HOH . D 4 HOH A 76 910 910 HOH HOH . D 4 HOH A 77 911 911 HOH HOH . D 4 HOH A 78 913 913 HOH HOH . D 4 HOH A 79 916 916 HOH HOH . D 4 HOH A 80 917 917 HOH HOH . D 4 HOH A 81 918 918 HOH HOH . D 4 HOH A 82 919 919 HOH HOH . D 4 HOH A 83 1202 1202 HOH HOH . D 4 HOH A 84 1203 1203 HOH HOH . D 4 HOH A 85 1205 1205 HOH HOH . D 4 HOH A 86 1206 1206 HOH HOH . D 4 HOH A 87 1208 1208 HOH HOH . D 4 HOH A 88 1209 1209 HOH HOH . D 4 HOH A 89 1211 1211 HOH HOH . D 4 HOH A 90 1212 1212 HOH HOH . D 4 HOH A 91 1213 1213 HOH HOH . D 4 HOH A 92 1214 1214 HOH HOH . D 4 HOH A 93 1216 1216 HOH HOH . D 4 HOH A 94 1217 1217 HOH HOH . D 4 HOH A 95 1220 1220 HOH HOH . D 4 HOH A 96 1221 1221 HOH HOH . D 4 HOH A 97 1224 1224 HOH HOH . D 4 HOH A 98 1226 1226 HOH HOH . D 4 HOH A 99 1227 1227 HOH HOH . D 4 HOH A 100 1228 1228 HOH HOH . D 4 HOH A 101 1232 1232 HOH HOH . D 4 HOH A 102 1234 1234 HOH HOH . D 4 HOH A 103 1236 1236 HOH HOH . D 4 HOH A 104 1237 1237 HOH HOH . D 4 HOH A 105 1239 1239 HOH HOH . D 4 HOH A 106 1240 1240 HOH HOH . D 4 HOH A 107 1243 1243 HOH HOH . D 4 HOH A 108 1244 1244 HOH HOH . D 4 HOH A 109 1245 1245 HOH HOH . D 4 HOH A 110 1246 1246 HOH HOH . D 4 HOH A 111 1249 1249 HOH HOH . D 4 HOH A 112 1250 1250 HOH HOH . D 4 HOH A 113 1251 1251 HOH HOH . D 4 HOH A 114 1253 1253 HOH HOH . D 4 HOH A 115 1256 1256 HOH HOH . D 4 HOH A 116 1257 1257 HOH HOH . D 4 HOH A 117 1258 1258 HOH HOH . D 4 HOH A 118 1264 1264 HOH HOH . D 4 HOH A 119 1266 1266 HOH HOH . D 4 HOH A 120 1267 1267 HOH HOH . D 4 HOH A 121 1270 1270 HOH HOH . D 4 HOH A 122 1271 1271 HOH HOH . D 4 HOH A 123 1274 1274 HOH HOH . D 4 HOH A 124 1278 1278 HOH HOH . D 4 HOH A 125 1280 1280 HOH HOH . D 4 HOH A 126 1281 1281 HOH HOH . D 4 HOH A 127 1284 1284 HOH HOH . D 4 HOH A 128 1285 1285 HOH HOH . D 4 HOH A 129 1286 1286 HOH HOH . D 4 HOH A 130 1288 1288 HOH HOH . D 4 HOH A 131 1290 1290 HOH HOH . D 4 HOH A 132 1293 1293 HOH HOH . D 4 HOH A 133 1295 1295 HOH HOH . D 4 HOH A 134 1296 1296 HOH HOH . D 4 HOH A 135 1300 1300 HOH HOH . D 4 HOH A 136 1301 1301 HOH HOH . D 4 HOH A 137 1302 1302 HOH HOH . D 4 HOH A 138 1306 1306 HOH HOH . D 4 HOH A 139 1307 1307 HOH HOH . D 4 HOH A 140 1309 1309 HOH HOH . D 4 HOH A 141 1310 1310 HOH HOH . D 4 HOH A 142 1314 1314 HOH HOH . D 4 HOH A 143 1317 1317 HOH HOH . D 4 HOH A 144 1320 1320 HOH HOH . D 4 HOH A 145 1321 1321 HOH HOH . D 4 HOH A 146 1322 1322 HOH HOH . D 4 HOH A 147 1323 1323 HOH HOH . D 4 HOH A 148 1324 1324 HOH HOH . D 4 HOH A 149 1330 1330 HOH HOH . D 4 HOH A 150 1337 1337 HOH HOH . D 4 HOH A 151 1345 1345 HOH HOH . D 4 HOH A 152 1349 1349 HOH HOH . D 4 HOH A 153 1352 1352 HOH HOH . D 4 HOH A 154 1353 1353 HOH HOH . D 4 HOH A 155 1354 1354 HOH HOH . D 4 HOH A 156 1355 1355 HOH HOH . D 4 HOH A 157 1400 1400 HOH HOH . D 4 HOH A 158 1401 1401 HOH HOH . D 4 HOH A 159 1402 1402 HOH HOH . D 4 HOH A 160 1403 1403 HOH HOH . D 4 HOH A 161 1404 1404 HOH HOH . D 4 HOH A 162 1405 1405 HOH HOH . D 4 HOH A 163 1406 1406 HOH HOH . D 4 HOH A 164 1407 1407 HOH HOH . D 4 HOH A 165 1409 1409 HOH HOH . D 4 HOH A 166 1410 1410 HOH HOH . D 4 HOH A 167 1411 1411 HOH HOH . D 4 HOH A 168 1500 1500 HOH HOH . D 4 HOH A 169 1501 1501 HOH HOH . D 4 HOH A 170 1502 1502 HOH HOH . D 4 HOH A 171 1503 1503 HOH HOH . D 4 HOH A 172 1504 1504 HOH HOH . D 4 HOH A 173 1505 1505 HOH HOH . D 4 HOH A 174 1506 1506 HOH HOH . D 4 HOH A 175 1507 1507 HOH HOH . D 4 HOH A 176 1508 1508 HOH HOH . D 4 HOH A 177 1509 1509 HOH HOH . D 4 HOH A 178 1510 1510 HOH HOH . D 4 HOH A 179 1511 1511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IGN . . . C 3 43.44 22.982 50.915 1 27.89 ? C1 IGN 999 A 1 HETATM 2 O O2 IGN . . . C 3 44.539 23.454 51.163 1 26.4 ? O2 IGN 999 A 1 HETATM 3 N N3 IGN . . . C 3 43.275 21.688 50.511 1 27.41 ? N3 IGN 999 A 1 HETATM 4 C C4 IGN . . . C 3 44.44 20.841 50.364 1 26 ? C4 IGN 999 A 1 HETATM 5 C C5 IGN . . . C 3 44.249 19.546 51.181 1 26.47 ? C5 IGN 999 A 1 HETATM 6 C C6 IGN . . . C 3 45.605 19.061 51.72 1 26.45 ? C6 IGN 999 A 1 HETATM 7 N N7 IGN . . . C 3 45.415 17.981 52.672 1 27.58 ? N7 IGN 999 A 1 HETATM 8 C C8 IGN . . . C 3 45.871 18.063 53.889 1 26.59 ? C8 IGN 999 A 1 HETATM 9 N N9 IGN . . . C 3 46.322 19.18 54.413 1 25.84 ? N9 IGN 999 A 1 HETATM 10 N N10 IGN . . . C 3 45.899 16.986 54.613 1 27.21 ? N10 IGN 999 A 1 HETATM 11 N N11 IGN . . . C 3 42.487 24.914 52.077 1 29.89 ? N11 IGN 999 A 1 HETATM 12 C C12 IGN . . . C 3 42.222 23.878 51.05 1 28.64 ? C12 IGN 999 A 1 HETATM 13 C C13 IGN . . . C 3 42.017 24.503 49.671 1 29.74 ? C13 IGN 999 A 1 HETATM 14 C C14 IGN . . . C 3 40.831 25.508 49.685 1 30.17 ? C14 IGN 999 A 1 HETATM 15 C C15 IGN . . . C 3 41.182 26.625 50.708 1 31.26 ? C15 IGN 999 A 1 HETATM 16 C C16 IGN . . . C 3 41.445 26.016 52.112 1 31.43 ? C16 IGN 999 A 1 HETATM 17 O O31 IGN . . . C 3 43.075 23.183 53.49 1 26.08 ? O31 IGN 999 A 1 HETATM 18 C C32 IGN . . . C 3 42.675 24.361 53.324 1 30.11 ? C32 IGN 999 A 1 HETATM 19 C C33 IGN . . . C 3 42.387 25.193 54.534 1 31.35 ? C33 IGN 999 A 1 HETATM 20 C C34 IGN . . . C 3 41.253 24.491 55.375 1 32.2 ? C34 IGN 999 A 1 HETATM 21 C C51 IGN . . . C 3 39.048 24.518 56.538 1 34.79 ? C51 IGN 999 A 1 HETATM 22 C C52 IGN . . . C 3 40.112 25.425 55.838 1 33.23 ? C52 IGN 999 A 1 HETATM 23 C C53 IGN . . . C 3 39.476 26.239 54.662 1 35.41 ? C53 IGN 999 A 1 HETATM 24 C C54 IGN . . . C 3 38.108 26.859 55.043 1 35.31 ? C54 IGN 999 A 1 HETATM 25 C C55 IGN . . . C 3 37.167 25.763 55.509 1 35.29 ? C55 IGN 999 A 1 HETATM 26 C C56 IGN . . . C 3 37.715 25.228 56.822 1 34.23 ? C56 IGN 999 A 1 HETATM 27 N N21 IGN . . . C 3 43.521 25.3 55.418 1 28.94 ? N21 IGN 999 A 1 HETATM 28 C C22 IGN . . . C 3 44.847 24.903 54.938 1 28.43 ? C22 IGN 999 A 1 HETATM 29 C C23 IGN . . . C 3 45.734 24.721 56.122 1 29.99 ? C23 IGN 999 A 1 HETATM 30 O O24 IGN . . . C 3 45.239 24.727 57.286 1 33.17 ? O24 IGN 999 A 1 HETATM 31 O O25 IGN . . . C 3 47.046 24.58 55.949 1 27.39 ? O25 IGN 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #